data_G5J # _chem_comp.id G5J _chem_comp.name "5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-07 _chem_comp.pdbx_modified_date 2018-12-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G5J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DCC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G5J C2 C1 C 0 1 N N N 21.184 67.240 22.489 -6.981 -1.890 -1.105 C2 G5J 1 G5J N2 N1 N 0 1 N N N 21.538 67.176 21.098 -7.828 -1.849 -2.180 N2 G5J 2 G5J C4 C2 C 0 1 Y N N 21.793 66.991 24.717 -5.071 -1.025 0.001 C4 G5J 3 G5J C5 C3 C 0 1 Y N N 20.536 67.374 25.130 -5.264 -1.950 1.020 C5 G5J 4 G5J C6 C4 C 0 1 N N N 19.584 67.700 24.106 -6.399 -2.871 0.912 C6 G5J 5 G5J O6 O1 O 0 1 N N N 18.310 68.078 24.443 -6.612 -3.703 1.781 O6 G5J 6 G5J "O2'" O2 O 0 1 N N N 25.949 66.621 24.837 -5.039 2.495 -0.996 "O2'" G5J 7 G5J "O3'" O3 O 0 1 N N N 26.344 68.673 26.552 -3.114 4.160 -1.073 "O3'" G5J 8 G5J "O4'" O4 O 0 1 N N N 24.243 65.898 27.199 -1.982 0.949 -0.097 "O4'" G5J 9 G5J "O5'" O5 O 0 1 N N N 23.842 67.889 29.047 0.735 1.994 -0.190 "O5'" G5J 10 G5J "C1'" C5 C 0 1 N N R 23.885 66.307 25.873 -3.378 0.792 -0.433 "C1'" G5J 11 G5J "C2'" C6 C 0 1 N N R 24.729 67.266 25.437 -4.031 2.138 -0.048 "C2'" G5J 12 G5J "C3'" C7 C 0 1 N N S 25.184 68.024 26.702 -2.862 3.148 -0.095 "C3'" G5J 13 G5J C3G C8 C 0 1 N N N 20.570 63.604 34.668 7.007 -4.041 -1.776 C3G G5J 14 G5J "C4'" C9 C 0 1 N N R 25.327 66.753 27.645 -1.642 2.293 -0.503 "C4'" G5J 15 G5J "C5'" C10 C 0 1 N N N 25.040 67.129 29.111 -0.388 2.770 0.232 "C5'" G5J 16 G5J C8 C11 C 0 1 Y N N 21.724 66.941 26.914 -3.513 -0.785 1.533 C8 G5J 17 G5J N1 N2 N 0 1 N N N 19.955 67.614 22.839 -7.199 -2.781 -0.162 N1 G5J 18 G5J N3 N3 N 0 1 N N N 22.103 66.928 23.407 -5.945 -1.012 -1.055 N3 G5J 19 G5J N7 N4 N 0 1 Y N N 20.526 67.322 26.494 -4.281 -1.758 1.931 N7 G5J 20 G5J N9 N5 N 0 1 Y N N 22.502 66.733 25.847 -3.968 -0.303 0.341 N9 G5J 21 G5J O1A O6 O 0 1 N N N 24.375 69.381 31.098 2.749 3.680 -0.064 O1A G5J 22 G5J O1B O7 O 0 1 N N N 20.375 67.324 31.979 5.789 1.576 -0.133 O1B G5J 23 G5J O1G O8 O 0 1 N N N 23.309 64.238 33.950 7.212 -1.626 0.197 O1G G5J 24 G5J O2A O9 O 0 1 N N N 22.079 69.536 30.056 2.205 2.135 1.857 O2A G5J 25 G5J O2B O10 O 0 1 N N N 21.204 66.198 29.964 4.637 0.266 1.692 O2B G5J 26 G5J O2G O11 O 0 1 N N N 22.789 66.640 34.149 5.254 -3.089 0.828 O2G G5J 27 G5J O3A O12 O 0 1 N N N 22.886 67.452 31.443 3.206 1.095 -0.214 O3A G5J 28 G5J O3B O13 O 0 1 N N N 21.910 65.257 32.137 4.920 -0.871 -0.544 O3B G5J 29 G5J O3G O14 O 0 1 N N N 20.863 64.965 34.500 6.107 -2.937 -1.655 O3G G5J 30 G5J PA P1 P 0 1 N N N 23.283 68.663 30.424 2.224 2.224 0.380 PA G5J 31 G5J PB P2 P 0 1 N N N 21.529 66.577 31.332 4.638 0.511 0.232 PB G5J 32 G5J PG P3 P 0 1 N N N 22.251 65.293 33.745 5.902 -2.120 -0.283 PG G5J 33 G5J H1 H1 H 0 1 N N N 20.863 67.412 20.399 -8.571 -2.470 -2.236 H1 G5J 34 G5J H2 H2 H 0 1 N N N 22.459 66.896 20.829 -7.684 -1.199 -2.886 H2 G5J 35 G5J H3 H3 H 0 1 N N N 26.545 67.294 24.529 -5.482 3.332 -0.803 H3 G5J 36 G5J H4 H4 H 0 1 N N N 26.566 69.116 27.362 -3.905 4.688 -0.898 H4 G5J 37 G5J H5 H5 H 0 1 N N N 23.974 65.429 25.216 -3.493 0.606 -1.501 H5 G5J 38 G5J H6 H6 H 0 1 N N N 24.265 67.962 24.723 -4.452 2.085 0.955 H6 G5J 39 G5J H7 H7 H 0 1 N N N 24.370 68.665 27.071 -2.706 3.597 0.886 H7 G5J 40 G5J H8 H8 H 0 1 N N N 19.608 63.497 35.191 8.020 -3.710 -1.549 H8 G5J 41 G5J H9 H9 H 0 1 N N N 20.508 63.118 33.683 6.715 -4.826 -1.078 H9 G5J 42 G5J H10 H10 H 0 1 N N N 21.364 63.129 35.262 6.971 -4.428 -2.795 H10 G5J 43 G5J H11 H11 H 0 1 N N N 26.317 66.288 27.531 -1.491 2.337 -1.581 H11 G5J 44 G5J H12 H12 H 0 1 N N N 24.898 66.227 29.724 -0.529 2.650 1.306 H12 G5J 45 G5J H13 H13 H 0 1 N N N 25.862 67.730 29.528 -0.211 3.821 0.004 H13 G5J 46 G5J H14 H14 H 0 1 N N N 22.022 66.819 27.945 -2.648 -0.416 2.064 H14 G5J 47 G5J H15 H15 H 0 1 N N N 23.020 66.648 23.122 -5.823 -0.371 -1.773 H15 G5J 48 G5J H16 H16 H 0 1 N N N 24.141 70.297 31.194 2.787 3.810 -1.021 H16 G5J 49 G5J H17 H17 H 0 1 N N N 19.659 67.399 31.359 5.847 1.785 -1.075 H17 G5J 50 G5J H18 H18 H 0 1 N N N 23.685 66.546 34.450 4.392 -3.451 0.580 H18 G5J 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G5J N2 C2 SING N N 1 G5J C2 N1 DOUB N N 2 G5J C2 N3 SING N N 3 G5J N1 C6 SING N N 4 G5J N3 C4 SING N N 5 G5J C6 O6 DOUB N N 6 G5J C6 C5 SING N N 7 G5J C4 C5 DOUB Y N 8 G5J C4 N9 SING Y N 9 G5J "O2'" "C2'" SING N N 10 G5J C5 N7 SING Y N 11 G5J "C2'" "C1'" SING N N 12 G5J "C2'" "C3'" SING N N 13 G5J N9 "C1'" SING N N 14 G5J N9 C8 SING Y N 15 G5J "C1'" "O4'" SING N N 16 G5J N7 C8 DOUB Y N 17 G5J "O3'" "C3'" SING N N 18 G5J "C3'" "C4'" SING N N 19 G5J "O4'" "C4'" SING N N 20 G5J "C4'" "C5'" SING N N 21 G5J "O5'" "C5'" SING N N 22 G5J "O5'" PA SING N N 23 G5J O2B PB DOUB N N 24 G5J O2A PA DOUB N N 25 G5J PA O1A SING N N 26 G5J PA O3A SING N N 27 G5J PB O3A SING N N 28 G5J PB O1B SING N N 29 G5J PB O3B SING N N 30 G5J O3B PG SING N N 31 G5J PG O1G DOUB N N 32 G5J PG O2G SING N N 33 G5J PG O3G SING N N 34 G5J O3G C3G SING N N 35 G5J N2 H1 SING N N 36 G5J N2 H2 SING N N 37 G5J "O2'" H3 SING N N 38 G5J "O3'" H4 SING N N 39 G5J "C1'" H5 SING N N 40 G5J "C2'" H6 SING N N 41 G5J "C3'" H7 SING N N 42 G5J C3G H8 SING N N 43 G5J C3G H9 SING N N 44 G5J C3G H10 SING N N 45 G5J "C4'" H11 SING N N 46 G5J "C5'" H12 SING N N 47 G5J "C5'" H13 SING N N 48 G5J C8 H14 SING N N 49 G5J N3 H15 SING N N 50 G5J O1A H16 SING N N 51 G5J O1B H17 SING N N 52 G5J O2G H18 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G5J SMILES ACDLabs 12.01 "C3(=NC(c2c(n(C1OC(C(O)C1O)COP(O)(=O)OP(O)(=O)OP(=O)(O)OC)cn2)N3)=O)N" G5J InChI InChI 1.03 "InChI=1S/C11H18N5O14P3/c1-26-31(20,21)29-33(24,25)30-32(22,23)27-2-4-6(17)7(18)10(28-4)16-3-13-5-8(16)14-11(12)15-9(5)19/h3-4,6-7,10,17-18H,2H2,1H3,(H,20,21)(H,22,23)(H,24,25)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1" G5J InChIKey InChI 1.03 DJZJYVFASQUZKQ-KQYNXXCUSA-N G5J SMILES_CANONICAL CACTVS 3.385 "CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3C(=O)N=C(N)Nc23" G5J SMILES CACTVS 3.385 "CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3C(=O)N=C(N)Nc23" G5J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2NC(=NC3=O)N)O)O" G5J SMILES "OpenEye OEToolkits" 2.0.6 "COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2NC(=NC3=O)N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G5J "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine" G5J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [methoxy(oxidanyl)phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G5J "Create component" 2018-05-07 RCSB G5J "Initial release" 2018-12-19 RCSB #