data_G5M # _chem_comp.id G5M _chem_comp.name "(2S)-2-{[2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N2 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-08 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DCK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G5M C7 C1 C 0 1 N N N 49.589 122.906 61.391 2.306 0.521 -0.747 C7 G5M 1 G5M C9 C2 C 0 1 N N S 54.290 121.855 62.034 -1.609 -1.971 0.107 C9 G5M 2 G5M C4 C3 C 0 1 N N S 51.311 118.682 60.200 -2.039 2.606 0.138 C4 G5M 3 G5M C6 C4 C 0 1 N N N 53.570 118.100 59.077 -4.200 1.792 -0.818 C6 G5M 4 G5M C1 C5 C 0 1 N N R 52.507 121.278 60.625 -0.860 0.132 -0.766 C1 G5M 5 G5M C3 C6 C 0 1 N N R 50.562 119.684 61.090 -0.666 2.171 0.660 C3 G5M 6 G5M C2 C7 C 0 1 N N R 50.994 121.092 60.666 0.030 1.325 -0.410 C2 G5M 7 G5M C5 C8 C 0 1 N N R 52.831 118.999 60.070 -2.850 1.363 -0.239 C5 G5M 8 G5M C10 C9 C 0 1 N N N 55.462 120.972 61.674 -2.986 -2.051 0.714 C10 G5M 9 G5M C11 C10 C 0 1 N N N 54.465 122.351 63.461 -0.723 -3.066 0.706 C11 G5M 10 G5M C12 C11 C 0 1 N N N 53.361 123.293 63.858 0.615 -3.064 0.013 C12 G5M 11 G5M C24 C12 C 0 1 N N N 49.516 123.517 63.838 4.466 1.212 0.255 C24 G5M 12 G5M C8 C13 C 0 1 N N R 49.381 124.001 62.418 3.625 0.023 -0.216 C8 G5M 13 G5M N2 N1 N 0 1 N N N 50.586 122.153 61.558 1.313 0.841 0.106 N2 G5M 14 G5M N25 N2 N 0 1 N N N 48.151 124.763 62.240 4.343 -0.693 -1.280 N25 G5M 15 G5M O1 O1 O 0 1 N N N 53.076 121.170 61.891 -1.039 -0.691 0.388 O1 G5M 16 G5M O13 O2 O 0 1 N N N 56.375 121.486 61.039 -3.376 -1.173 1.447 O13 G5M 17 G5M O14 O3 O 0 1 N N N 55.477 119.780 62.004 -3.780 -3.098 0.439 O14 G5M 18 G5M O15 O4 O 0 1 N N N 53.342 124.420 63.416 0.837 -2.269 -0.869 O15 G5M 19 G5M O16 O5 O 0 1 N N N 52.500 122.883 64.620 1.559 -3.946 0.375 O16 G5M 20 G5M O3 O6 O 0 1 N N N 49.173 119.497 60.948 0.124 3.326 0.948 O3 G5M 21 G5M O4 O7 O 0 1 N N N 51.082 117.340 60.601 -2.728 3.335 1.156 O4 G5M 22 G5M O5 O8 O 0 1 N N N 53.087 120.358 59.755 -2.132 0.606 -1.215 O5 G5M 23 G5M O6 O9 O 0 1 N N N 53.194 118.280 57.732 -5.002 0.635 -1.061 O6 G5M 24 G5M O7 O10 O 0 1 N N N 48.818 122.817 60.476 2.139 0.638 -1.943 O7 G5M 25 G5M S26 S1 S 0 1 N N N 48.085 122.720 64.567 6.054 0.613 0.895 S26 G5M 26 G5M H1 H1 H 0 1 N N N 54.302 122.729 61.366 -1.678 -2.109 -0.972 H1 G5M 27 G5M H2 H2 H 0 1 N N N 50.892 118.800 59.190 -1.911 3.239 -0.740 H2 G5M 28 G5M H3 H3 H 0 1 N N N 53.374 117.053 59.351 -4.709 2.444 -0.108 H3 G5M 29 G5M H4 H4 H 0 1 N N N 54.647 118.306 59.163 -4.041 2.327 -1.754 H4 G5M 30 G5M H5 H5 H 0 1 N N N 52.695 122.291 60.241 -0.389 -0.450 -1.558 H5 G5M 31 G5M H6 H6 H 0 1 N N N 50.866 119.522 62.135 -0.791 1.580 1.567 H6 G5M 32 G5M H7 H7 H 0 1 N N N 50.594 121.287 59.660 0.200 1.931 -1.300 H7 G5M 33 G5M H8 H8 H 0 1 N N N 53.270 118.796 61.058 -3.012 0.752 0.649 H8 G5M 34 G5M H9 H9 H 0 1 N N N 54.460 121.487 64.142 -0.581 -2.877 1.770 H9 G5M 35 G5M H10 H10 H 0 1 N N N 55.428 122.876 63.541 -1.202 -4.035 0.569 H10 G5M 36 G5M H11 H11 H 0 1 N N N 50.347 122.796 63.865 4.643 1.887 -0.582 H11 G5M 37 G5M H12 H12 H 0 1 N N N 49.765 124.387 64.463 3.934 1.743 1.044 H12 G5M 38 G5M H13 H13 H 0 1 N N N 50.207 124.711 62.265 3.448 -0.652 0.621 H13 G5M 39 G5M H14 H14 H 0 1 N N N 51.141 122.302 62.376 1.448 0.752 1.063 H14 G5M 40 G5M H15 H15 H 0 1 N N N 48.086 125.462 62.952 4.518 -0.088 -2.068 H15 G5M 41 G5M H16 H16 H 0 1 N N N 48.158 125.202 61.341 5.201 -1.092 -0.931 H16 G5M 42 G5M H18 H18 H 0 1 N N N 56.277 119.374 61.691 -4.655 -3.106 0.851 H18 G5M 43 G5M H19 H19 H 0 1 N N N 51.866 123.571 64.781 2.402 -3.907 -0.098 H19 G5M 44 G5M H20 H20 H 0 1 N N N 48.711 120.118 61.499 -0.262 3.911 1.615 H20 G5M 45 G5M H21 H21 H 0 1 N N N 50.147 117.185 60.669 -3.606 3.642 0.894 H21 G5M 46 G5M H22 H22 H 0 1 N N N 53.694 117.690 57.181 -5.874 0.831 -1.430 H22 G5M 47 G5M H23 H23 H 0 1 N N N 48.515 122.430 65.759 6.677 1.745 1.266 H23 G5M 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G5M O6 C6 SING N N 1 G5M C6 C5 SING N N 2 G5M O5 C5 SING N N 3 G5M O5 C1 SING N N 4 G5M C5 C4 SING N N 5 G5M C4 O4 SING N N 6 G5M C4 C3 SING N N 7 G5M O7 C7 DOUB N N 8 G5M C1 C2 SING N N 9 G5M C1 O1 SING N N 10 G5M C2 C3 SING N N 11 G5M C2 N2 SING N N 12 G5M O3 C3 SING N N 13 G5M O13 C10 DOUB N N 14 G5M C7 N2 SING N N 15 G5M C7 C8 SING N N 16 G5M C10 O14 SING N N 17 G5M C10 C9 SING N N 18 G5M O1 C9 SING N N 19 G5M C9 C11 SING N N 20 G5M N25 C8 SING N N 21 G5M C8 C24 SING N N 22 G5M O15 C12 DOUB N N 23 G5M C11 C12 SING N N 24 G5M C24 S26 SING N N 25 G5M C12 O16 SING N N 26 G5M C9 H1 SING N N 27 G5M C4 H2 SING N N 28 G5M C6 H3 SING N N 29 G5M C6 H4 SING N N 30 G5M C1 H5 SING N N 31 G5M C3 H6 SING N N 32 G5M C2 H7 SING N N 33 G5M C5 H8 SING N N 34 G5M C11 H9 SING N N 35 G5M C11 H10 SING N N 36 G5M C24 H11 SING N N 37 G5M C24 H12 SING N N 38 G5M C8 H13 SING N N 39 G5M N2 H14 SING N N 40 G5M N25 H15 SING N N 41 G5M N25 H16 SING N N 42 G5M O14 H18 SING N N 43 G5M O16 H19 SING N N 44 G5M O3 H20 SING N N 45 G5M O4 H21 SING N N 46 G5M O6 H22 SING N N 47 G5M S26 H23 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G5M SMILES ACDLabs 12.01 "C(NC1C(OC(CC(O)=O)C(O)=O)OC(C(O)C1O)CO)(C(CS)N)=O" G5M InChI InChI 1.03 "InChI=1S/C13H22N2O10S/c14-4(3-26)11(21)15-8-10(20)9(19)6(2-16)25-13(8)24-5(12(22)23)1-7(17)18/h4-6,8-10,13,16,19-20,26H,1-3,14H2,(H,15,21)(H,17,18)(H,22,23)/t4-,5-,6+,8+,9+,10+,13-/m0/s1" G5M InChIKey InChI 1.03 UHNHELGKNQMNGF-AOQKXWSCSA-N G5M SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H](CC(O)=O)C(O)=O" G5M SMILES CACTVS 3.385 "N[CH](CS)C(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CC(O)=O)C(O)=O" G5M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H](CC(=O)O)C(=O)O)NC(=O)[C@H](CS)N)O)O)O" G5M SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(C(O1)OC(CC(=O)O)C(=O)O)NC(=O)C(CS)N)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G5M "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{[2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid" G5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-[[(2~{R})-2-azanyl-3-sulfanyl-propanoyl]amino]-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxybutanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G5M "Create component" 2018-05-08 RCSB G5M "Initial release" 2022-04-13 RCSB ##