data_G5P # _chem_comp.id G5P _chem_comp.name ;P1-(5'-ADENOSYL)-P5-(5'-GUANOSYL) PENTAPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N10 O23 P5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-12-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 932.366 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2F3R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G5P PE PE P 0 1 N N R 14.202 -7.684 -1.223 -4.542 -0.290 -0.395 PE G5P 1 G5P O1E O1E O 0 1 N N N 13.869 -7.220 0.157 -5.056 1.049 -1.127 O1E G5P 2 G5P O2E O2E O 0 1 N N N 13.500 -7.101 -2.376 -3.843 -1.150 -1.376 O2E G5P 3 G5P PD PD P 0 1 N N S 17.210 -7.652 -0.942 -2.138 0.523 0.097 PD G5P 4 G5P O1D O1D O 0 1 N N N 17.620 -6.576 0.039 -1.374 -0.798 -0.418 O1D G5P 5 G5P O2D O2D O 0 1 N N N 16.954 -8.955 -0.203 -2.411 1.415 -1.052 O2D G5P 6 G5P O3D O3D O 0 1 N N N 15.766 -7.329 -1.552 -3.528 0.103 0.792 O3D G5P 7 G5P PG PG P 0 1 N N S 18.565 -7.425 -3.422 -0.127 2.132 0.325 PG G5P 8 G5P O1G O1G O 0 1 N N N 18.316 -8.523 -4.413 -0.800 3.490 -0.218 O1G G5P 9 G5P O2G O2G O 0 1 N N N 19.952 -6.895 -3.820 0.342 1.321 -0.820 O2G G5P 10 G5P O3G O3G O 0 1 N N N 18.400 -7.869 -2.002 -1.214 1.294 1.167 O3G G5P 11 G5P PB PB P 0 1 N N S 17.743 -4.854 -4.450 2.320 2.963 0.306 PB G5P 12 G5P O1B O1B O 0 1 N N N 18.383 -3.778 -3.627 2.086 4.493 -0.136 O1B G5P 13 G5P O2B O2B O 0 1 N N N 16.511 -4.399 -5.220 2.349 2.101 -0.897 O2B G5P 14 G5P O3B O3B O 0 1 N N N 17.565 -6.181 -3.724 1.122 2.494 1.274 O3B G5P 15 G5P O3A O3A O 0 1 N N N 18.865 -5.194 -5.637 3.722 2.838 1.088 O3A G5P 16 G5P PA PA P 0 1 N N S 19.483 -4.303 -6.790 4.884 2.928 -0.023 PA G5P 17 G5P O1A O1A O 0 1 N N N 18.865 -2.946 -6.831 5.131 4.469 -0.419 O1A G5P 18 G5P O2A O2A O 0 1 N N N 19.597 -5.069 -8.095 4.477 2.168 -1.226 O2A G5P 19 G5P "O5'" O5* O 0 1 N N N 20.996 -4.165 -6.282 6.244 2.303 0.572 "O5'" G5P 20 G5P "C5'" C5* C 0 1 N N N 21.214 -3.488 -5.079 7.198 2.302 -0.492 "C5'" G5P 21 G5P "C4'" C4* C 0 1 N N R 22.629 -3.640 -4.625 8.520 1.717 0.009 "C4'" G5P 22 G5P "O4'" O4* O 0 1 N N N 23.347 -2.558 -5.314 8.362 0.318 0.327 "O4'" G5P 23 G5P "C3'" C3* C 0 1 N N S 22.702 -3.392 -3.112 9.584 1.750 -1.111 "C3'" G5P 24 G5P "O3'" O3* O 0 1 N N N 23.863 -4.165 -2.614 10.440 2.883 -0.956 "O3'" G5P 25 G5P "C2'" C2* C 0 1 N N R 22.935 -1.915 -3.041 10.379 0.438 -0.913 "C2'" G5P 26 G5P "O2'" O2* O 0 1 N N N 23.454 -1.551 -1.813 11.751 0.721 -0.632 "O2'" G5P 27 G5P "C1'" C1* C 0 1 N N R 23.796 -1.651 -4.334 9.697 -0.232 0.301 "C1'" G5P 28 G5P N9 N9 N 0 1 Y N N 23.549 -0.197 -4.876 9.647 -1.685 0.121 N9 G5P 29 G5P C8 C8 C 0 1 Y N N 22.357 0.266 -5.366 8.614 -2.397 -0.415 C8 G5P 30 G5P N7 N7 N 0 1 Y N N 22.471 1.555 -5.749 8.908 -3.664 -0.422 N7 G5P 31 G5P C5 C5 C 0 1 Y N N 23.791 1.900 -5.481 10.143 -3.841 0.107 C5 G5P 32 G5P C6 C6 C 0 1 Y N N 24.464 3.134 -5.687 10.960 -4.971 0.347 C6 G5P 33 G5P O6 O6 O 0 1 N N N 23.949 4.161 -6.161 10.577 -6.091 0.055 O6 G5P 34 G5P N1 N1 N 0 1 Y N N 25.823 3.105 -5.291 12.177 -4.777 0.901 N1 G5P 35 G5P C2 C2 C 0 1 Y N N 26.431 1.959 -4.750 12.592 -3.520 1.228 C2 G5P 36 G5P N2 N2 N 0 1 N N N 27.739 2.029 -4.402 13.831 -3.355 1.795 N2 G5P 37 G5P N3 N3 N 0 1 Y N N 25.770 0.785 -4.558 11.843 -2.463 1.010 N3 G5P 38 G5P C4 C4 C 0 1 Y N N 24.473 0.832 -4.944 10.629 -2.576 0.460 C4 G5P 39 G5P O5F AO5* O 0 1 N N N 14.294 -9.214 -1.334 -5.801 -1.086 0.215 O5F G5P 40 G5P C5F AC5* C 0 1 N N N 13.275 -10.158 -0.923 -6.600 -1.507 -0.892 C5F G5P 41 G5P C4F AC4* C 0 1 N N R 13.929 -11.447 -0.554 -7.820 -2.274 -0.378 C4F G5P 42 G5P O4F AO4* O 0 1 N N N 12.973 -12.492 -0.421 -8.686 -1.385 0.348 O4F G5P 43 G5P C1F AC1* C 0 1 N N R 13.366 -13.658 -1.192 -10.040 -1.825 0.107 C1F G5P 44 G5P C2F AC2* C 0 1 N N R 14.215 -13.091 -2.324 -10.034 -2.206 -1.396 C2F G5P 45 G5P O2F AO2* O 0 1 N N N 14.953 -14.187 -2.877 -11.056 -3.162 -1.683 O2F G5P 46 G5P C3F AC3* C 0 1 N N S 15.043 -11.993 -1.582 -8.626 -2.834 -1.566 C3F G5P 47 G5P O3F AO3* O 0 1 N N N 16.108 -12.519 -0.725 -8.703 -4.259 -1.500 O3F G5P 48 G5P N9A AN9 N 0 1 Y N N 12.216 -14.454 -1.725 -10.988 -0.738 0.363 N9A G5P 49 G5P C4A AC4 C 0 1 Y N N 11.863 -15.733 -1.269 -12.317 -0.878 0.674 C4A G5P 50 G5P N3A AN3 N 0 1 Y N N 12.505 -16.470 -0.261 -13.137 -1.909 0.850 N3A G5P 51 G5P C2A AC2 C 0 1 Y N N 11.941 -17.689 -0.033 -14.402 -1.716 1.159 C2A G5P 52 G5P N1A AN1 N 0 1 Y N N 10.848 -18.197 -0.701 -14.917 -0.510 1.314 N1A G5P 53 G5P C6A AC6 C 0 1 Y N N 10.223 -17.469 -1.693 -14.174 0.581 1.163 C6A G5P 54 G5P N6A AN6 N 0 1 N N N 9.184 -18.074 -2.260 -14.723 1.841 1.327 N6A G5P 55 G5P C5A AC5 C 0 1 Y N N 10.754 -16.139 -2.012 -12.817 0.426 0.833 C5A G5P 56 G5P N7A AN7 N 0 1 Y N N 10.422 -15.140 -2.909 -11.788 1.278 0.607 N7A G5P 57 G5P C8A AC8 C 0 1 Y N N 11.299 -14.169 -2.711 -10.714 0.596 0.331 C8A G5P 58 G5P H1E H1E H 0 1 N N N 13.798 -7.970 0.735 -5.504 1.580 -0.454 H1E G5P 59 G5P H1D H1D H 0 1 N N N 17.706 -6.954 0.906 -1.216 -1.350 0.360 H1D G5P 60 G5P H1G H1G H 0 1 N N N 18.263 -8.155 -5.287 -1.092 3.987 0.558 H1G G5P 61 G5P H1B H1B H 0 1 N N N 18.518 -4.094 -2.742 2.075 5.019 0.675 H1B G5P 62 G5P H1A H1A H 0 1 N N N 18.734 -2.630 -5.945 5.394 4.927 0.391 H1A G5P 63 G5P "H5'1" 1H5* H 0 0 N N N 20.552 -3.916 -4.312 7.360 3.324 -0.835 "H5'1" G5P 64 G5P "H5'2" 2H5* H 0 0 N N N 21.000 -2.419 -5.227 6.822 1.697 -1.317 "H5'2" G5P 65 G5P "H4'" H4* H 0 1 N N N 23.040 -4.638 -4.838 8.871 2.268 0.882 "H4'" G5P 66 G5P H7 H7 H 0 1 N N N 21.824 -3.690 -2.520 9.106 1.764 -2.091 H7 G5P 67 G5P H9 H9 H 0 1 N N N 24.465 -4.331 -3.330 11.080 2.851 -1.679 H9 G5P 68 G5P H10 H10 H 0 1 N N N 22.045 -1.269 -3.065 10.294 -0.197 -1.795 H10 G5P 69 G5P H11 H11 H 0 1 N N N 24.398 -1.467 -1.880 12.102 1.191 -1.400 H11 G5P 70 G5P "H1'" H1* H 0 1 N N N 24.865 -1.770 -4.104 10.228 0.018 1.220 "H1'" G5P 71 G5P H8 H8 H 0 1 N N N 21.452 -0.319 -5.436 7.690 -1.972 -0.778 H8 G5P 72 G5P HN1 HN1 H 0 1 N N N 26.372 3.933 -5.401 12.755 -5.537 1.075 HN1 G5P 73 G5P HN21 1HN2 H 0 0 N N N 28.323 2.836 -4.496 14.142 -2.466 2.029 HN21 G5P 74 G5P HN22 2HN2 H 0 0 N N N 28.026 1.144 -4.036 14.394 -4.126 1.965 HN22 G5P 75 G5P H11X 1H1 H 0 0 N N N 12.567 -10.323 -1.748 -6.930 -0.634 -1.455 H11X G5P 76 G5P H12 2H1 H 0 1 N N N 12.729 -9.759 -0.055 -6.010 -2.156 -1.540 H12 G5P 77 G5P H1 H1 H 0 1 N N N 14.430 -11.197 0.393 -7.499 -3.090 0.270 H1 G5P 78 G5P H2 H2 H 0 1 N N N 13.905 -14.377 -0.557 -10.277 -2.693 0.722 H2 G5P 79 G5P "H2'" H2* H 0 1 N N N 13.707 -12.639 -3.189 -10.145 -1.320 -2.022 "H2'" G5P 80 G5P H3 H3 H 0 1 N N N 15.116 -14.026 -3.799 -10.999 -3.356 -2.629 H3 G5P 81 G5P "H3'" H3* H 0 1 N N N 15.515 -11.303 -2.297 -8.180 -2.521 -2.510 "H3'" G5P 82 G5P H4 H4 H 0 1 N N N 16.900 -12.633 -1.237 -9.267 -4.543 -2.232 H4 G5P 83 G5P H6 H6 H 0 1 N N N 12.386 -18.307 0.733 -15.042 -2.575 1.291 H6 G5P 84 G5P HN61 1HN6 H 0 0 N N N 8.613 -17.701 -2.992 -14.170 2.630 1.214 HN61 G5P 85 G5P HN62 2HN6 H 0 0 N N N 9.074 -18.968 -1.825 -15.661 1.935 1.555 HN62 G5P 86 G5P H5 H5 H 0 1 N N N 11.296 -13.244 -3.268 -9.748 1.025 0.110 H5 G5P 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G5P PE O1E SING N N 1 G5P PE O2E DOUB N N 2 G5P PE O3D SING N N 3 G5P PE O5F SING N N 4 G5P O1E H1E SING N N 5 G5P PD O1D SING N N 6 G5P PD O2D DOUB N N 7 G5P PD O3D SING N N 8 G5P PD O3G SING N N 9 G5P O1D H1D SING N N 10 G5P PG O1G SING N N 11 G5P PG O2G DOUB N N 12 G5P PG O3G SING N N 13 G5P PG O3B SING N N 14 G5P O1G H1G SING N N 15 G5P PB O1B SING N N 16 G5P PB O2B DOUB N N 17 G5P PB O3B SING N N 18 G5P PB O3A SING N N 19 G5P O1B H1B SING N N 20 G5P O3A PA SING N N 21 G5P PA O1A SING N N 22 G5P PA O2A DOUB N N 23 G5P PA "O5'" SING N N 24 G5P O1A H1A SING N N 25 G5P "O5'" "C5'" SING N N 26 G5P "C5'" "C4'" SING N N 27 G5P "C5'" "H5'1" SING N N 28 G5P "C5'" "H5'2" SING N N 29 G5P "C4'" "O4'" SING N N 30 G5P "C4'" "C3'" SING N N 31 G5P "C4'" "H4'" SING N N 32 G5P "O4'" "C1'" SING N N 33 G5P "C3'" "O3'" SING N N 34 G5P "C3'" "C2'" SING N N 35 G5P "C3'" H7 SING N N 36 G5P "O3'" H9 SING N N 37 G5P "C2'" "O2'" SING N N 38 G5P "C2'" "C1'" SING N N 39 G5P "C2'" H10 SING N N 40 G5P "O2'" H11 SING N N 41 G5P "C1'" N9 SING N N 42 G5P "C1'" "H1'" SING N N 43 G5P N9 C8 SING Y N 44 G5P N9 C4 SING Y N 45 G5P C8 N7 DOUB Y N 46 G5P C8 H8 SING N N 47 G5P N7 C5 SING Y N 48 G5P C5 C6 SING Y N 49 G5P C5 C4 DOUB Y N 50 G5P C6 O6 DOUB N N 51 G5P C6 N1 SING Y N 52 G5P N1 C2 SING Y N 53 G5P N1 HN1 SING N N 54 G5P C2 N2 SING N N 55 G5P C2 N3 DOUB Y N 56 G5P N2 HN21 SING N N 57 G5P N2 HN22 SING N N 58 G5P N3 C4 SING Y N 59 G5P O5F C5F SING N N 60 G5P C5F C4F SING N N 61 G5P C5F H11X SING N N 62 G5P C5F H12 SING N N 63 G5P C4F O4F SING N N 64 G5P C4F C3F SING N N 65 G5P C4F H1 SING N N 66 G5P O4F C1F SING N N 67 G5P C1F C2F SING N N 68 G5P C1F N9A SING N N 69 G5P C1F H2 SING N N 70 G5P C2F O2F SING N N 71 G5P C2F C3F SING N N 72 G5P C2F "H2'" SING N N 73 G5P O2F H3 SING N N 74 G5P C3F O3F SING N N 75 G5P C3F "H3'" SING N N 76 G5P O3F H4 SING N N 77 G5P N9A C4A SING Y N 78 G5P N9A C8A SING Y N 79 G5P C4A N3A SING Y N 80 G5P C4A C5A DOUB Y N 81 G5P N3A C2A DOUB Y N 82 G5P C2A N1A SING Y N 83 G5P C2A H6 SING N N 84 G5P N1A C6A DOUB Y N 85 G5P C6A N6A SING N N 86 G5P C6A C5A SING Y N 87 G5P N6A HN61 SING N N 88 G5P N6A HN62 SING N N 89 G5P C5A N7A SING Y N 90 G5P N7A C8A DOUB Y N 91 G5P C8A H5 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G5P SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P@@](O)(=O)O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" G5P SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" G5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" G5P SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" G5P InChI InChI 1.03 ;InChI=1S/C20H29N10O23P5/c21-14-8-15(24-3-23-14)29(4-25-8)18-12(33)10(31)6(48-18)1-46-54(36,37)50-56(40,41)52-58(44,45)53-57(42,43)51-55(38,39)47-2-7-11(32)13(34)19(49-7)30-5-26-9-16(30)27-20(22)28-17(9)35/h3-7,10-13,18-19,31-34H,1-2H2,(H,36,37)(H,38,39)(H,40,41)(H,42,43)(H,44,45)(H2,21,23,24)(H3,22,27,28,35)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1 ; G5P InChIKey InChI 1.03 CNMILLPGDWDFCZ-INFSMZHSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;[[[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G5P "Create component" 2005-12-15 RCSB G5P "Modify descriptor" 2011-06-04 RCSB #