data_G5Q # _chem_comp.id G5Q _chem_comp.name "5'-O-(N-(L-aspartyl)-sulfamoyl)N3-methyluridine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N4 O11 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-29 _chem_comp.pdbx_modified_date 2019-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G5Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G5Q N N1 N 0 1 N N N -18.616 -6.798 -14.578 2.745 2.508 0.624 N G5Q 1 G5Q CA C1 C 0 1 N N S -17.889 -5.545 -14.862 3.374 1.398 -0.105 CA G5Q 2 G5Q C C2 C 0 1 N N N -18.620 -4.533 -13.974 2.982 0.091 0.535 C G5Q 3 G5Q O O1 O 0 1 N N N -19.683 -4.745 -13.396 2.572 0.073 1.676 O G5Q 4 G5Q CG C3 C 0 1 N N N -17.004 -5.682 -17.261 5.296 2.799 -0.805 CG G5Q 5 G5Q CD C4 C 0 1 N N N -17.978 -5.013 -16.296 4.895 1.554 -0.058 CD G5Q 6 G5Q OD1 O2 O 0 1 N N N -15.814 -5.801 -16.904 6.591 3.140 -0.896 OD1 G5Q 7 G5Q OD2 O3 O 0 1 N N N -17.465 -6.077 -18.363 4.451 3.492 -1.323 OD2 G5Q 8 G5Q "C1'" C5 C 0 1 N N R -22.619 1.008 -13.932 -2.800 -0.917 0.060 "C1'" G5Q 9 G5Q C2 C6 C 0 1 N N N -24.244 1.593 -12.223 -4.115 1.044 0.637 C2 G5Q 10 G5Q "C2'" C7 C 0 1 N N R -21.498 2.012 -14.247 -2.874 -1.537 -1.359 "C2'" G5Q 11 G5Q "C3'" C8 C 0 1 N N S -20.299 1.102 -14.537 -2.004 -2.807 -1.204 "C3'" G5Q 12 G5Q C3U C9 C 0 1 N N N -25.828 2.329 -10.518 -5.536 2.905 1.300 C3U G5Q 13 G5Q C4 C10 C 0 1 N N N -23.805 1.105 -9.840 -3.542 3.197 -0.067 C4 G5Q 14 G5Q "C4'" C11 C 0 1 N N R -20.968 -0.141 -15.097 -1.124 -2.515 0.027 "C4'" G5Q 15 G5Q C5 C12 C 0 1 N N N -22.570 0.506 -10.246 -2.413 2.665 -0.735 C5 G5Q 16 G5Q "C5'" C13 C 0 1 N N N -20.147 -1.401 -15.018 0.354 -2.592 -0.359 "C5'" G5Q 17 G5Q C6 C14 C 0 1 N N N -22.222 0.473 -11.542 -2.186 1.335 -0.686 C6 G5Q 18 G5Q N1 N2 N 0 1 N N N -23.032 1.003 -12.516 -3.046 0.526 0.006 N1 G5Q 19 G5Q N3 N3 N 0 1 N N N -24.585 1.637 -10.874 -4.365 2.366 0.604 N3 G5Q 20 G5Q N3S N4 N 0 1 N N N -18.014 -3.253 -13.828 3.088 -1.058 -0.161 N3S G5Q 21 G5Q O1S O4 O 0 1 N N N -17.811 -0.866 -13.345 2.848 -3.498 -0.446 O1S G5Q 22 G5Q O2 O5 O 0 1 N N N -24.991 2.037 -13.077 -4.870 0.307 1.242 O2 G5Q 23 G5Q "O2'" O6 O 0 1 N N N -21.893 2.743 -15.400 -4.220 -1.878 -1.698 "O2'" G5Q 24 G5Q O2S O7 O 0 1 N N N -18.866 -2.343 -11.662 3.292 -2.525 1.813 O2S G5Q 25 G5Q "O3'" O8 O 0 1 N N N -19.424 1.656 -15.511 -2.827 -3.952 -0.973 "O3'" G5Q 26 G5Q O4 O9 O 0 1 N N N -24.211 1.163 -8.683 -3.766 4.393 -0.097 O4 G5Q 27 G5Q "O4'" O10 O 0 1 N N N -22.149 -0.283 -14.285 -1.445 -1.187 0.479 "O4'" G5Q 28 G5Q "O5'" O11 O 0 1 N N N -20.041 -1.739 -13.611 1.161 -2.434 0.810 "O5'" G5Q 29 G5Q S S1 S 0 1 N N N -18.590 -2.007 -13.013 2.658 -2.495 0.542 S G5Q 30 G5Q H1 H1 H 0 1 N N N -18.488 -7.048 -13.618 1.740 2.463 0.553 H1 G5Q 31 G5Q H2 H2 H 0 1 N N N -19.590 -6.667 -14.761 3.039 2.519 1.589 H2 G5Q 32 G5Q H4 H4 H 0 1 N N N -16.836 -5.625 -14.554 3.039 1.409 -1.143 H4 G5Q 33 G5Q H5 H5 H 0 1 N N N -17.764 -3.934 -16.280 5.220 1.632 0.979 H5 G5Q 34 G5Q H6 H6 H 0 1 N N N -19.001 -5.179 -16.665 5.364 0.685 -0.521 H6 G5Q 35 G5Q H7 H7 H 0 1 N N N -15.319 -6.233 -17.590 6.799 3.947 -1.386 H7 G5Q 36 G5Q H8 H8 H 0 1 N N N -23.489 1.265 -14.553 -3.513 -1.402 0.727 H8 G5Q 37 G5Q H9 H9 H 0 1 N N N -21.299 2.661 -13.381 -2.447 -0.862 -2.101 H9 G5Q 38 G5Q H10 H10 H 0 1 N N N -19.770 0.863 -13.602 -1.384 -2.956 -2.088 H10 G5Q 39 G5Q H11 H11 H 0 1 N N N -25.972 2.287 -9.428 -5.262 3.167 2.323 H11 G5Q 40 G5Q H12 H12 H 0 1 N N N -25.768 3.379 -10.840 -5.890 3.795 0.780 H12 G5Q 41 G5Q H13 H13 H 0 1 N N N -26.676 1.840 -11.019 -6.326 2.155 1.316 H13 G5Q 42 G5Q H14 H14 H 0 1 N N N -21.249 0.043 -16.145 -1.339 -3.236 0.816 H14 G5Q 43 G5Q H15 H15 H 0 1 N N N -21.913 0.077 -9.504 -1.741 3.315 -1.278 H15 G5Q 44 G5Q H16 H16 H 0 1 N N N -20.645 -2.214 -15.567 0.561 -3.560 -0.815 H16 G5Q 45 G5Q H17 H17 H 0 1 N N N -19.147 -1.230 -15.444 0.586 -1.798 -1.069 H17 G5Q 46 G5Q H18 H18 H 0 1 N N N -21.284 0.019 -11.825 -1.330 0.911 -1.190 H18 G5Q 47 G5Q H19 H19 H 0 1 N N N -17.134 -3.120 -14.284 3.415 -1.044 -1.074 H19 G5Q 48 G5Q H20 H20 H 0 1 N N N -22.636 3.295 -15.186 -4.317 -2.269 -2.577 H20 G5Q 49 G5Q H21 H21 H 0 1 N N N -19.007 2.433 -15.158 -3.441 -4.147 -1.694 H21 G5Q 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G5Q OD2 CG DOUB N N 1 G5Q CG OD1 SING N N 2 G5Q CG CD SING N N 3 G5Q CD CA SING N N 4 G5Q "O3'" "C3'" SING N N 5 G5Q "O2'" "C2'" SING N N 6 G5Q "C4'" "C5'" SING N N 7 G5Q "C4'" "C3'" SING N N 8 G5Q "C4'" "O4'" SING N N 9 G5Q "C5'" "O5'" SING N N 10 G5Q CA N SING N N 11 G5Q CA C SING N N 12 G5Q "C3'" "C2'" SING N N 13 G5Q "O4'" "C1'" SING N N 14 G5Q "C2'" "C1'" SING N N 15 G5Q C N3S SING N N 16 G5Q C O DOUB N N 17 G5Q "C1'" N1 SING N N 18 G5Q N3S S SING N N 19 G5Q "O5'" S SING N N 20 G5Q O1S S DOUB N N 21 G5Q O2 C2 DOUB N N 22 G5Q S O2S DOUB N N 23 G5Q N1 C2 SING N N 24 G5Q N1 C6 SING N N 25 G5Q C2 N3 SING N N 26 G5Q C6 C5 DOUB N N 27 G5Q N3 C3U SING N N 28 G5Q N3 C4 SING N N 29 G5Q C5 C4 SING N N 30 G5Q C4 O4 DOUB N N 31 G5Q N H1 SING N N 32 G5Q N H2 SING N N 33 G5Q CA H4 SING N N 34 G5Q CD H5 SING N N 35 G5Q CD H6 SING N N 36 G5Q OD1 H7 SING N N 37 G5Q "C1'" H8 SING N N 38 G5Q "C2'" H9 SING N N 39 G5Q "C3'" H10 SING N N 40 G5Q C3U H11 SING N N 41 G5Q C3U H12 SING N N 42 G5Q C3U H13 SING N N 43 G5Q "C4'" H14 SING N N 44 G5Q C5 H15 SING N N 45 G5Q "C5'" H16 SING N N 46 G5Q "C5'" H17 SING N N 47 G5Q C6 H18 SING N N 48 G5Q N3S H19 SING N N 49 G5Q "O2'" H20 SING N N 50 G5Q "O3'" H21 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G5Q InChI InChI 1.03 "InChI=1S/C14H20N4O11S/c1-17-8(19)2-3-18(14(17)25)13-11(23)10(22)7(29-13)5-28-30(26,27)16-12(24)6(15)4-9(20)21/h2-3,6-7,10-11,13,22-23H,4-5,15H2,1H3,(H,16,24)(H,20,21)/t6-,7+,10+,11+,13+/m0/s1" G5Q InChIKey InChI 1.03 ICPNIEAOMPRPLI-MQZAXFGZSA-N G5Q SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)C=CN([C@@H]2O[C@H](CO[S](=O)(=O)NC(=O)[C@@H](N)CC(O)=O)[C@@H](O)[C@H]2O)C1=O" G5Q SMILES CACTVS 3.385 "CN1C(=O)C=CN([CH]2O[CH](CO[S](=O)(=O)NC(=O)[CH](N)CC(O)=O)[CH](O)[CH]2O)C1=O" G5Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1C(=O)C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)NC(=O)[C@H](CC(=O)O)N)O)O" G5Q SMILES "OpenEye OEToolkits" 2.0.6 "CN1C(=O)C=CN(C1=O)C2C(C(C(O2)COS(=O)(=O)NC(=O)C(CC(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id G5Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G5Q "Create component" 2018-08-29 EBI G5Q "Initial release" 2019-12-18 RCSB ##