data_G6D # _chem_comp.id G6D _chem_comp.name alpha-D-quinovopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-D-quinovose; 6-deoxy-alpha-D-glucopyranose; D-quinovose; quinovose; 6-DEOXY-ALPHA-D-GLUCOSE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-04 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces GLW _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B2Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 G6D alpha-D-quinovose PDB ? 2 G6D 6-deoxy-alpha-D-glucopyranose PDB ? 3 G6D D-quinovose PDB ? 4 G6D quinovose PDB ? 5 G6D 6-DEOXY-ALPHA-D-GLUCOSE PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G6D C1 C1 C 0 1 N N S 24.522 3.027 45.032 -0.845 1.417 -0.243 C1 G6D 1 G6D O2 O2 O 0 1 N N N 23.895 3.507 42.722 -2.707 -0.123 -0.142 O2 G6D 2 G6D C2 C2 C 0 1 N N R 24.413 2.502 43.591 -1.345 0.004 -0.554 C2 G6D 3 G6D C3 C3 C 0 1 N N S 23.518 1.276 43.558 -0.484 -1.012 0.203 C3 G6D 4 G6D O3 O3 O 0 1 N N N 23.460 0.747 42.243 -0.896 -2.337 -0.138 O3 G6D 5 G6D C4 C4 C 0 1 N N S 24.093 0.235 44.500 0.984 -0.814 -0.189 C4 G6D 6 G6D O4 O4 O 0 1 N N N 23.244 -0.903 44.507 1.804 -1.708 0.567 O4 G6D 7 G6D C5 C5 C 0 1 N N R 24.183 0.829 45.903 1.393 0.631 0.109 C5 G6D 8 G6D O5 O5 O 0 1 N N N 25.015 1.999 45.872 0.534 1.524 -0.603 O5 G6D 9 G6D C6 C6 C 0 1 N N N 24.728 -0.184 46.913 2.840 0.853 -0.336 C6 G6D 10 G6D O1 O1 O 0 1 N Y N 23.285 3.525 45.467 -0.995 1.678 1.154 O1 G6D 11 G6D H1 H1 H 0 1 N N N 25.251 3.851 45.021 -1.427 2.142 -0.813 H1 G6D 12 G6D HO2 HO2 H 0 1 N Y N 23.836 3.163 41.839 -3.309 0.495 -0.579 HO2 G6D 13 G6D H2 HC2 H 0 1 N N N 25.419 2.207 43.257 -1.270 -0.181 -1.626 H2 G6D 14 G6D H3 HC3 H 0 1 N N N 22.512 1.557 43.904 -0.600 -0.860 1.276 H3 G6D 15 G6D HO3 HO3 H 0 1 N Y N 22.898 -0.019 42.234 -1.819 -2.530 0.076 HO3 G6D 16 G6D H4 HC4 H 0 1 N N N 25.103 -0.040 44.161 1.107 -1.018 -1.252 H4 G6D 17 G6D HO4 HO4 H 0 1 N Y N 23.598 -1.559 45.095 2.748 -1.637 0.369 HO4 G6D 18 G6D H5 HC5 H 0 1 N N N 23.169 1.113 46.219 1.308 0.820 1.179 H5 G6D 19 G6D H61 HC61 H 0 1 N N N 24.778 0.281 47.909 2.924 0.664 -1.406 H61 G6D 20 G6D H62 HC62 H 0 1 N N N 24.063 -1.059 46.950 3.131 1.881 -0.124 H62 G6D 21 G6D H63 HC63 H 0 1 N N N 25.735 -0.502 46.606 3.495 0.170 0.206 H63 G6D 22 G6D HO1 HO1 H 0 1 N Y N 23.368 3.845 46.358 -0.698 2.558 1.424 HO1 G6D 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G6D C1 C2 SING N N 1 G6D C1 O5 SING N N 2 G6D C1 O1 SING N N 3 G6D C1 H1 SING N N 4 G6D O2 C2 SING N N 5 G6D O2 HO2 SING N N 6 G6D C2 C3 SING N N 7 G6D C2 H2 SING N N 8 G6D C3 O3 SING N N 9 G6D C3 C4 SING N N 10 G6D C3 H3 SING N N 11 G6D O3 HO3 SING N N 12 G6D C4 O4 SING N N 13 G6D C4 C5 SING N N 14 G6D C4 H4 SING N N 15 G6D O4 HO4 SING N N 16 G6D C5 O5 SING N N 17 G6D C5 C6 SING N N 18 G6D C5 H5 SING N N 19 G6D C6 H61 SING N N 20 G6D C6 H62 SING N N 21 G6D C6 H63 SING N N 22 G6D O1 HO1 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G6D SMILES ACDLabs 12.01 "C1(C(O)C(O)C(O)C(O1)C)O" G6D InChI InChI 1.03 "InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5-,6+/m1/s1" G6D InChIKey InChI 1.03 SHZGCJCMOBCMKK-DVKNGEFBSA-N G6D SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O" G6D SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" G6D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O" G6D SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G6D "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-alpha-D-glucopyranose G6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S,5S,6R)-6-methyloxane-2,3,4,5-tetrol" G6D "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DQuipa G6D "COMMON NAME" GMML 1.0 a-D-quinovopyranose G6D "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-6-deoxy-Glcp G6D "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Qui # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support G6D "CARBOHYDRATE ISOMER" D PDB ? G6D "CARBOHYDRATE RING" pyranose PDB ? G6D "CARBOHYDRATE ANOMER" alpha PDB ? G6D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G6D "Create component" 1999-08-04 PDBJ G6D "Modify descriptor" 2011-06-04 RCSB G6D "Modify atom id" 2017-10-13 RCSB G6D "Other modification" 2019-08-12 RCSB G6D "Other modification" 2019-12-19 RCSB G6D "Other modification" 2020-07-03 RCSB G6D "Modify name" 2020-07-17 RCSB G6D "Modify synonyms" 2020-07-17 RCSB G6D "Modify atom id" 2020-07-17 RCSB G6D "Modify component atom id" 2020-07-17 RCSB ##