data_G6N # _chem_comp.id G6N _chem_comp.name "[(2~{S},3~{S},4~{R})-4-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,3-bis(oxidanyl)-5-[oxidanyl-[(2~{R})-2-oxidanylpropoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H47 N O24 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-27 _chem_comp.pdbx_modified_date 2022-08-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 783.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G6N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G6N C2 C1 C 0 1 N N R 28.136 19.324 37.535 -0.992 -3.230 -1.510 C2 G6N 1 G6N C4 C2 C 0 1 N N R 29.821 17.939 38.765 -1.393 -1.208 -0.103 C4 G6N 2 G6N C5 C3 C 0 1 N N R 30.518 19.211 36.883 -3.100 -1.901 -1.638 C5 G6N 3 G6N C6 C4 C 0 1 N N N 31.763 19.878 36.329 -4.619 -1.977 -1.809 C6 G6N 4 G6N C7 C5 C 0 1 N N N 27.431 17.306 40.653 1.220 -2.385 1.305 C7 G6N 5 G6N C8 C6 C 0 1 N N N 28.212 18.077 41.664 2.705 -2.234 1.512 C8 G6N 6 G6N C9 C7 C 0 1 N N R 30.411 15.675 38.254 -0.783 1.019 -0.748 C9 G6N 7 G6N C10 C8 C 0 1 N N N 30.898 15.001 36.999 -2.023 1.712 -1.314 C10 G6N 8 G6N C11 C9 C 0 1 N N S 29.540 14.756 39.085 0.475 1.668 -1.329 C11 G6N 9 G6N C12 C10 C 0 1 N N N 32.233 14.085 34.085 -7.048 1.510 0.306 C12 G6N 10 G6N O14 O1 O 0 1 N N N 27.662 11.807 43.040 5.764 2.969 -0.934 O14 G6N 11 G6N C15 C11 C 0 1 N N S 30.401 13.687 39.761 1.715 0.975 -0.764 C15 G6N 12 G6N C16 C12 C 0 1 N N N 29.588 12.828 40.703 2.973 1.624 -1.345 C16 G6N 13 G6N C17 C13 C 0 1 N N N 30.946 13.523 44.123 8.076 1.023 -0.139 C17 G6N 14 G6N C18 C14 C 0 1 N N R 31.721 12.976 45.302 8.770 0.144 0.904 C18 G6N 15 G6N C19 C15 C 0 1 N N S 32.386 11.629 44.990 10.252 0.516 0.982 C19 G6N 16 G6N C20 C16 C 0 1 N N S 33.374 11.120 46.049 10.945 -0.363 2.024 C20 G6N 17 G6N O21 O2 O 0 1 N N N 33.479 10.181 48.268 13.049 -0.728 3.155 O21 G6N 18 G6N C1 C17 C 0 1 N N S 29.312 20.133 37.010 -2.504 -3.307 -1.742 C1 G6N 19 G6N C3 C18 C 0 1 N N R 28.490 18.689 38.879 -0.728 -2.586 -0.145 C3 G6N 20 G6N O1 O3 O 0 1 N N N 30.846 18.751 38.208 -2.792 -1.347 -0.357 O1 G6N 21 G6N O2 O4 O 0 1 N N N 29.634 16.845 37.924 -0.809 -0.366 -1.099 O2 G6N 22 G6N N1 N1 N 0 1 N N N 27.490 17.766 39.391 0.716 -2.439 0.056 N1 G6N 23 G6N O3 O5 O 0 1 N N N 26.992 20.158 37.634 -0.437 -4.547 -1.532 O3 G6N 24 G6N O4 O6 O 0 1 N N N 28.970 20.703 35.745 -2.761 -3.839 -3.043 O4 G6N 25 G6N O5 O7 O 0 1 N N N 32.029 21.115 36.977 -5.161 -0.655 -1.846 O5 G6N 26 G6N O6 O8 O 0 1 N N N 26.773 16.315 40.983 0.479 -2.457 2.262 O6 G6N 27 G6N O7 O9 O 0 1 N N N 31.941 15.842 36.455 -3.191 1.198 -0.671 O7 G6N 28 G6N P1 P1 P 0 1 N N N 33.393 15.198 36.199 -4.617 1.944 -0.716 P1 G6N 29 G6N O8 O10 O 0 1 N N N 33.051 13.922 35.282 -5.707 1.068 0.082 O8 G6N 30 G6N C13 C19 C 0 1 N N S 31.123 13.062 33.965 -7.774 0.501 1.199 C13 G6N 31 G6N C14 C20 C 0 1 N N N 31.167 12.028 35.057 -9.167 1.034 1.541 C14 G6N 32 G6N O9 O11 O 0 1 N N N 28.515 14.112 38.329 0.501 3.053 -0.978 O9 G6N 33 G6N O10 O12 O 0 1 N N N 29.016 13.685 41.747 4.131 1.056 -0.730 O10 G6N 34 G6N P2 P2 P 0 1 N N N 28.534 13.030 43.133 5.631 1.505 -1.102 P2 G6N 35 G6N O11 O13 O 0 1 N N N 29.951 12.533 43.711 6.673 0.756 -0.129 O11 G6N 36 G6N O12 O14 O 0 1 N N N 27.994 14.191 43.924 5.946 1.110 -2.631 O12 G6N 37 G6N O13 O15 O 0 1 N N N 33.882 14.653 37.514 -5.084 2.115 -2.248 O13 G6N 38 G6N C21 C21 C 0 1 N N N 32.665 10.919 47.374 12.427 0.010 2.102 C21 G6N 39 G6N O15 O16 O 0 1 N N N 34.214 16.208 35.452 -4.497 3.277 -0.085 O15 G6N 40 G6N O16 O17 O 0 1 N N N 31.471 14.310 40.481 1.689 -0.410 -1.115 O16 G6N 41 G6N O17 O18 O 0 1 N N N 29.831 13.712 33.951 -7.896 -0.744 0.509 O17 G6N 42 G6N O18 O19 O 0 1 N N N 30.792 12.810 46.377 8.643 -1.230 0.529 O18 G6N 43 G6N O19 O20 O 0 1 N N N 34.503 11.979 46.261 10.818 -1.736 1.649 O19 G6N 44 G6N O20 O21 O 0 1 N N N 33.013 11.705 43.710 10.378 1.890 1.357 O20 G6N 45 G6N H1 H1 H 0 1 N N N 27.935 18.513 36.820 -0.531 -2.627 -2.293 H1 G6N 46 G6N H2 H2 H 0 1 N N N 30.116 17.602 39.770 -1.245 -0.763 0.881 H2 G6N 47 G6N H3 H3 H 0 1 N N N 30.251 18.358 36.241 -2.678 -1.268 -2.418 H3 G6N 48 G6N H4 H4 H 0 1 N N N 32.622 19.207 36.475 -4.854 -2.492 -2.740 H4 G6N 49 G6N H5 H5 H 0 1 N N N 31.620 20.062 35.254 -5.052 -2.523 -0.971 H5 G6N 50 G6N H6 H6 H 0 1 N N N 28.085 17.617 42.655 2.923 -2.209 2.579 H6 G6N 51 G6N H7 H7 H 0 1 N N N 29.277 18.067 41.390 3.223 -3.077 1.055 H7 G6N 52 G6N H8 H8 H 0 1 N N N 27.850 19.115 41.692 3.044 -1.306 1.050 H8 G6N 53 G6N H9 H9 H 0 1 N N N 31.283 15.970 38.856 -0.774 1.118 0.338 H9 G6N 54 G6N H10 H10 H 0 1 N N N 30.074 14.903 36.277 -1.953 2.785 -1.135 H10 G6N 55 G6N H11 H11 H 0 1 N N N 31.299 14.004 37.235 -2.087 1.526 -2.386 H11 G6N 56 G6N H12 H12 H 0 1 N N N 29.074 15.359 39.878 0.466 1.569 -2.415 H12 G6N 57 G6N H13 H13 H 0 1 N N N 32.885 13.996 33.204 -7.032 2.483 0.796 H13 G6N 58 G6N H14 H14 H 0 1 N N N 31.781 15.088 34.107 -7.568 1.590 -0.648 H14 G6N 59 G6N H15 H15 H 0 1 N N N 30.819 13.039 38.976 1.724 1.074 0.322 H15 G6N 60 G6N H16 H16 H 0 1 N N N 28.779 12.332 40.147 3.009 1.448 -2.420 H16 G6N 61 G6N H17 H17 H 0 1 N N N 30.236 12.067 41.163 2.949 2.697 -1.153 H17 G6N 62 G6N H18 H18 H 0 1 N N N 31.635 13.724 43.289 8.248 2.073 0.099 H18 G6N 63 G6N H19 H19 H 0 1 N N N 30.441 14.456 44.414 8.481 0.803 -1.127 H19 G6N 64 G6N H20 H20 H 0 1 N N N 32.501 13.698 45.584 8.304 0.299 1.877 H20 G6N 65 G6N H21 H21 H 0 1 N N N 31.578 10.885 44.929 10.717 0.361 0.008 H21 G6N 66 G6N H22 H22 H 0 1 N N N 33.738 10.137 45.714 10.480 -0.208 2.997 H22 G6N 67 G6N H23 H23 H 0 1 N N N 33.020 10.064 49.092 13.992 -0.542 3.262 H23 G6N 68 G6N H24 H24 H 0 1 N N N 29.547 20.928 37.732 -2.956 -3.951 -0.988 H24 G6N 69 G6N H25 H25 H 0 1 N N N 28.626 19.501 39.608 -1.144 -3.216 0.641 H25 G6N 70 G6N H26 H26 H 0 1 N N N 26.789 17.447 38.753 1.309 -2.382 -0.710 H26 G6N 71 G6N H27 H27 H 0 1 N N N 26.258 19.652 37.962 -0.568 -5.014 -2.368 H27 G6N 72 G6N H28 H28 H 0 1 N N N 28.217 21.273 35.847 -3.701 -3.912 -3.259 H28 G6N 73 G6N H29 H29 H 0 1 N N N 32.813 21.505 36.607 -6.126 -0.627 -1.888 H29 G6N 74 G6N H30 H30 H 0 1 N N N 31.258 12.539 33.007 -7.206 0.354 2.117 H30 G6N 75 G6N H31 H31 H 0 1 N N N 32.152 11.539 35.060 -9.735 1.181 0.623 H31 G6N 76 G6N H34 H34 H 0 1 N N N 28.004 13.551 38.901 0.510 3.217 -0.025 H34 G6N 77 G6N H35 H35 H 0 1 N N N 27.136 13.970 44.267 5.878 0.163 -2.815 H35 G6N 78 G6N H36 H36 H 0 1 N N N 34.719 15.047 37.729 -5.212 1.279 -2.716 H36 G6N 79 G6N H37 H37 H 0 1 N N N 32.440 11.901 47.816 12.911 -0.228 1.155 H37 G6N 80 G6N H38 H38 H 0 1 N N N 31.727 10.371 47.203 12.523 1.077 2.301 H38 G6N 81 G6N H39 H39 H 0 1 N N N 32.003 13.643 40.899 1.680 -0.574 -2.068 H39 G6N 82 G6N H40 H40 H 0 1 N N N 29.147 13.057 33.875 -8.392 -0.688 -0.319 H40 G6N 83 G6N H41 H41 H 0 1 N N N 31.245 12.466 47.138 9.036 -1.441 -0.329 H41 G6N 84 G6N H42 H42 H 0 1 N N N 35.068 11.602 46.926 11.211 -1.947 0.791 H42 G6N 85 G6N H43 H43 H 0 1 N N N 33.427 10.874 43.510 9.985 2.101 2.215 H43 G6N 86 G6N C23 C23 C 0 1 N N N ? ? ? -9.893 0.026 2.434 C23 G6N 87 G6N C24 C24 C 0 1 N N N ? ? ? -11.286 0.558 2.776 C24 G6N 88 G6N O22 O22 O 0 1 N N N ? ? ? -9.044 2.279 2.231 O22 G6N 89 G6N O23 O23 O 0 1 N N N ? ? ? -10.015 -1.220 1.744 O23 G6N 90 G6N O24 O24 O 0 1 N N N ? ? ? -11.920 -0.326 3.703 O24 G6N 91 G6N H32 H32 H 0 1 N N N ? ? ? -9.325 -0.122 3.352 H32 G6N 92 G6N H33 H33 H 0 1 N N N ? ? ? -11.197 1.548 3.222 H33 G6N 93 G6N H44 H44 H 0 1 N N N ? ? ? -11.884 0.622 1.867 H44 G6N 94 G6N H45 H45 H 0 1 N N N ? ? ? -8.549 2.223 3.059 H45 G6N 95 G6N H46 H46 H 0 1 N N N ? ? ? -10.511 -1.164 0.916 H46 G6N 96 G6N H47 H47 H 0 1 N N N ? ? ? -12.809 -0.051 3.965 H47 G6N 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G6N O17 C13 SING N N 1 G6N C13 C12 SING N N 2 G6N C13 C14 SING N N 3 G6N C12 O8 SING N N 4 G6N O8 P1 SING N N 5 G6N O15 P1 DOUB N N 6 G6N O4 C1 SING N N 7 G6N P1 O7 SING N N 8 G6N P1 O13 SING N N 9 G6N C6 C5 SING N N 10 G6N C6 O5 SING N N 11 G6N O7 C10 SING N N 12 G6N C5 C1 SING N N 13 G6N C5 O1 SING N N 14 G6N C10 C9 SING N N 15 G6N C1 C2 SING N N 16 G6N C2 O3 SING N N 17 G6N C2 C3 SING N N 18 G6N O2 C9 SING N N 19 G6N O2 C4 SING N N 20 G6N O1 C4 SING N N 21 G6N C9 C11 SING N N 22 G6N O9 C11 SING N N 23 G6N C4 C3 SING N N 24 G6N C3 N1 SING N N 25 G6N C11 C15 SING N N 26 G6N N1 C7 SING N N 27 G6N C15 O16 SING N N 28 G6N C15 C16 SING N N 29 G6N C7 O6 DOUB N N 30 G6N C7 C8 SING N N 31 G6N C16 O10 SING N N 32 G6N O10 P2 SING N N 33 G6N O14 P2 DOUB N N 34 G6N P2 O11 SING N N 35 G6N P2 O12 SING N N 36 G6N O20 C19 SING N N 37 G6N O11 C17 SING N N 38 G6N C17 C18 SING N N 39 G6N C19 C18 SING N N 40 G6N C19 C20 SING N N 41 G6N C18 O18 SING N N 42 G6N C20 O19 SING N N 43 G6N C20 C21 SING N N 44 G6N C21 O21 SING N N 45 G6N C2 H1 SING N N 46 G6N C4 H2 SING N N 47 G6N C5 H3 SING N N 48 G6N C6 H4 SING N N 49 G6N C6 H5 SING N N 50 G6N C8 H6 SING N N 51 G6N C8 H7 SING N N 52 G6N C8 H8 SING N N 53 G6N C9 H9 SING N N 54 G6N C10 H10 SING N N 55 G6N C10 H11 SING N N 56 G6N C11 H12 SING N N 57 G6N C12 H13 SING N N 58 G6N C12 H14 SING N N 59 G6N C15 H15 SING N N 60 G6N C16 H16 SING N N 61 G6N C16 H17 SING N N 62 G6N C17 H18 SING N N 63 G6N C17 H19 SING N N 64 G6N C18 H20 SING N N 65 G6N C19 H21 SING N N 66 G6N C20 H22 SING N N 67 G6N O21 H23 SING N N 68 G6N C1 H24 SING N N 69 G6N C3 H25 SING N N 70 G6N N1 H26 SING N N 71 G6N O3 H27 SING N N 72 G6N O4 H28 SING N N 73 G6N O5 H29 SING N N 74 G6N C13 H30 SING N N 75 G6N C14 H31 SING N N 76 G6N O9 H34 SING N N 77 G6N O12 H35 SING N N 78 G6N O13 H36 SING N N 79 G6N C21 H37 SING N N 80 G6N C21 H38 SING N N 81 G6N O16 H39 SING N N 82 G6N O17 H40 SING N N 83 G6N O18 H41 SING N N 84 G6N O19 H42 SING N N 85 G6N O20 H43 SING N N 86 G6N C14 C23 SING N N 87 G6N C24 C23 SING N N 88 G6N O22 C14 SING N N 89 G6N O23 C23 SING N N 90 G6N O24 C24 SING N N 91 G6N C23 H32 SING N N 92 G6N C24 H33 SING N N 93 G6N C24 H44 SING N N 94 G6N O22 H45 SING N N 95 G6N O23 H46 SING N N 96 G6N O24 H47 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G6N InChI InChI 1.06 "InChI=1S/C23H47NO24P2/c1-9(28)24-17-22(38)21(37)15(4-27)47-23(17)48-16(8-46-50(41,42)44-6-13(32)19(35)11(30)3-26)20(36)14(33)7-45-49(39,40)43-5-12(31)18(34)10(29)2-25/h10-23,25-27,29-38H,2-8H2,1H3,(H,24,28)(H,39,40)(H,41,42)/t10-,11?,12+,13-,14-,15+,16+,17+,18-,19?,20-,21+,22+,23+/m0/s1" G6N InChIKey InChI 1.06 CTFVIOIQZHDZBZ-PFSLZBRHSA-N G6N SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H](CO[P](O)(=O)OC[C@H](O)C(O)C(O)CO)[C@@H](O)[C@@H](O)CO[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CO" G6N SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CO[P](O)(=O)OC[CH](O)C(O)C(O)CO)[CH](O)[CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CO" G6N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[C@H](COP(=O)(O)OC[C@@H]([C@H]([C@H](CO)O)O)O)[C@H]([C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)O)CO)O)O" G6N SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OC(COP(=O)(O)OCC(C(C(CO)O)O)O)C(C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id G6N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)-5-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{S},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G6N "Create component" 2022-01-27 PDBE G6N "Modify descriptor" 2022-08-22 RCSB G6N "Initial release" 2022-08-31 RCSB #