data_G6S # _chem_comp.id G6S _chem_comp.name 6-O-sulfo-beta-D-galactopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O9 S" _chem_comp.mon_nstd_parent_comp_id GAL _chem_comp.pdbx_synonyms "D-GALACTOSE-6-SULFATE; 6-O-sulfo-beta-D-galactose; 6-O-sulfo-D-galactose; 6-O-sulfo-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-01-25 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G6S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KES _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 G6S D-GALACTOSE-6-SULFATE PDB ? 2 G6S 6-O-sulfo-beta-D-galactose PDB ? 3 G6S 6-O-sulfo-D-galactose PDB ? 4 G6S 6-O-sulfo-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G6S C1 C1 C 0 1 N N R 1.195 0.434 2.038 -2.069 1.427 0.208 C1 G6S 1 G6S C2 C2 C 0 1 N N R 1.152 -0.273 3.386 -3.120 0.373 -0.149 C2 G6S 2 G6S C3 C3 C 0 1 N N S 1.658 0.647 4.487 -2.782 -0.937 0.569 C3 G6S 3 G6S C4 C4 C 0 1 N N R 3.032 1.196 4.125 -1.367 -1.372 0.175 C4 G6S 4 G6S C5 C5 C 0 1 N N R 2.999 1.820 2.734 -0.383 -0.251 0.520 C5 G6S 5 G6S C6 C6 C 0 1 N N N 4.363 2.283 2.268 1.024 -0.653 0.075 C6 G6S 6 G6S O1 O1 O 0 1 N Y N 0.850 -0.481 1.052 -2.345 2.636 -0.502 O1 G6S 7 G6S O2 O2 O 0 1 N N N -0.181 -0.694 3.653 -4.410 0.826 0.266 O2 G6S 8 G6S O4 O4 O 0 1 N N N 4.004 0.149 4.131 -1.321 -1.634 -1.229 O4 G6S 9 G6S O5 O5 O 0 1 N N N 2.532 0.862 1.772 -0.772 0.947 -0.156 O5 G6S 10 G6S O6 O6 O 0 1 N N N 4.305 2.887 0.977 1.960 0.340 0.499 O6 G6S 11 G6S S S S 0 1 N N N 5.696 3.414 0.386 3.400 0.041 0.108 S G6S 12 G6S O7 O7 O 0 1 N N N 6.623 2.305 0.270 4.205 1.007 0.772 O7 G6S 13 G6S O8 O8 O 0 1 N N N 6.251 4.416 1.275 3.577 -1.360 0.268 O8 G6S 14 G6S O9 O9 O 0 1 N N N 5.476 3.998 -0.923 3.531 0.324 -1.381 O9 G6S 15 G6S O3 O3 O 0 1 N N N 1.737 -0.075 5.717 -3.717 -1.948 0.184 O3 G6S 16 G6S H1 H1 H 0 1 N N N 0.508 1.293 2.049 -2.097 1.620 1.280 H1 G6S 17 G6S H2 H2 H 0 1 N N N 1.809 -1.155 3.356 -3.120 0.209 -1.227 H2 G6S 18 G6S H3 H3 H 0 1 N N N 0.958 1.488 4.599 -2.831 -0.786 1.647 H3 G6S 19 G6S H4 H4 H 0 1 N N N 3.303 1.957 4.871 -1.097 -2.274 0.724 H4 G6S 20 G6S H5 H5 H 0 1 N N N 2.327 2.687 2.808 -0.389 -0.079 1.596 H5 G6S 21 G6S H61 H6 H 0 1 N N N 4.749 3.022 2.986 1.286 -1.612 0.521 H61 G6S 22 G6S H62 H6A H 0 1 N N N 5.034 1.412 2.220 1.052 -0.737 -1.012 H62 G6S 23 G6S HO2 HO2 H 0 1 N Y N -0.212 -1.136 4.494 -4.687 1.656 -0.146 HO2 G6S 24 G6S HO4 HO4 H 0 1 N Y N 4.855 0.505 3.904 -1.924 -2.332 -1.519 HO4 G6S 25 G6S HO3 HO3 H 0 1 N Y N 2.053 0.501 6.403 -4.636 -1.735 0.397 HO3 G6S 26 G6S HO1 HO1 H 0 1 N Y N 0.872 -0.056 0.203 -1.717 3.349 -0.324 HO1 G6S 27 G6S HO9 HO9 H 0 1 N N N 5.987 3.527 -1.570 4.416 0.165 -1.736 HO9 G6S 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G6S C1 C2 SING N N 1 G6S C1 O1 SING N N 2 G6S C1 O5 SING N N 3 G6S C2 C3 SING N N 4 G6S C2 O2 SING N N 5 G6S C3 C4 SING N N 6 G6S C3 O3 SING N N 7 G6S C4 C5 SING N N 8 G6S C4 O4 SING N N 9 G6S C5 C6 SING N N 10 G6S C5 O5 SING N N 11 G6S C6 O6 SING N N 12 G6S O6 S SING N N 13 G6S S O7 DOUB N N 14 G6S S O8 DOUB N N 15 G6S S O9 SING N N 16 G6S C1 H1 SING N N 17 G6S C2 H2 SING N N 18 G6S C3 H3 SING N N 19 G6S C4 H4 SING N N 20 G6S C5 H5 SING N N 21 G6S C6 H61 SING N N 22 G6S C6 H62 SING N N 23 G6S O2 HO2 SING N N 24 G6S O4 HO4 SING N N 25 G6S O3 HO3 SING N N 26 G6S O1 HO1 SING N N 27 G6S O9 HO9 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G6S SMILES ACDLabs 12.01 "O=S(=O)(O)OCC1OC(O)C(O)C(O)C1O" G6S SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1O[C@H](CO[S](O)(=O)=O)[C@H](O)[C@H](O)[C@H]1O" G6S SMILES CACTVS 3.370 "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O" G6S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)OS(=O)(=O)O" G6S SMILES "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(C(O1)O)O)O)O)OS(=O)(=O)O" G6S InChI InChI 1.03 "InChI=1S/C6H12O9S/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H,11,12,13)/t2-,3+,4+,5-,6-/m1/s1" G6S InChIKey InChI 1.03 OKUVUONOJCDUJY-FPRJBGLDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G6S "SYSTEMATIC NAME" ACDLabs 12.01 6-O-sulfo-beta-D-galactopyranose G6S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4S,5R,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methyl hydrogen sulfate" G6S "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalp[6S]b G6S "COMMON NAME" GMML 1.0 6-sulfo-b-D-galactopyranose G6S "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Galp6SO3 # _pdbx_chem_comp_related.comp_id G6S _pdbx_chem_comp_related.related_comp_id GAL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 G6S C1 GAL C1 "Carbohydrate core" 2 G6S C2 GAL C2 "Carbohydrate core" 3 G6S C3 GAL C3 "Carbohydrate core" 4 G6S C4 GAL C4 "Carbohydrate core" 5 G6S C5 GAL C5 "Carbohydrate core" 6 G6S C6 GAL C6 "Carbohydrate core" 7 G6S O1 GAL O1 "Carbohydrate core" 8 G6S O2 GAL O2 "Carbohydrate core" 9 G6S O3 GAL O3 "Carbohydrate core" 10 G6S O4 GAL O4 "Carbohydrate core" 11 G6S O5 GAL O5 "Carbohydrate core" 12 G6S O6 GAL O6 "Carbohydrate core" 13 G6S H1 GAL H1 "Carbohydrate core" 14 G6S H2 GAL H2 "Carbohydrate core" 15 G6S H3 GAL H3 "Carbohydrate core" 16 G6S H4 GAL H4 "Carbohydrate core" 17 G6S H5 GAL H5 "Carbohydrate core" 18 G6S H61 GAL H61 "Carbohydrate core" 19 G6S H62 GAL H62 "Carbohydrate core" 20 G6S HO1 GAL HO1 "Carbohydrate core" 21 G6S HO2 GAL HO2 "Carbohydrate core" 22 G6S HO3 GAL HO3 "Carbohydrate core" 23 G6S HO4 GAL HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support G6S "CARBOHYDRATE ISOMER" D PDB ? G6S "CARBOHYDRATE RING" pyranose PDB ? G6S "CARBOHYDRATE ANOMER" beta PDB ? G6S "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G6S "Create component" 2001-01-25 RCSB G6S "Modify descriptor" 2011-06-04 RCSB G6S "Other modification" 2020-07-03 RCSB G6S "Modify parent residue" 2020-07-17 RCSB G6S "Modify name" 2020-07-17 RCSB G6S "Modify synonyms" 2020-07-17 RCSB G6S "Modify linking type" 2020-07-17 RCSB G6S "Modify atom id" 2020-07-17 RCSB G6S "Modify component atom id" 2020-07-17 RCSB G6S "Modify leaving atom flag" 2020-07-17 RCSB ##