data_G7C # _chem_comp.id G7C _chem_comp.name "[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H47 N O24 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-27 _chem_comp.pdbx_modified_date 2022-08-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 783.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G7C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QXE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G7C C2 C1 C 0 1 N N R 6.136 -27.202 -63.132 -0.557 4.547 0.838 C2 G7C 1 G7C C4 C2 C 0 1 N N R 5.565 -25.152 -61.847 0.783 4.648 -1.265 C4 G7C 2 G7C C5 C3 C 0 1 N N R 4.246 -25.823 -61.479 0.484 3.159 -1.468 C5 G7C 3 G7C C6 C4 C 0 1 N N N 7.150 -28.307 -63.372 -1.748 5.142 1.593 C6 G7C 4 G7C C7 C5 C 0 1 N N R 2.099 -28.809 -62.289 -0.094 0.364 0.923 C7 G7C 5 G7C C8 C6 C 0 1 N N S 1.302 -28.638 -63.568 -1.336 -0.528 0.942 C8 G7C 6 G7C C9 C7 C 0 1 N N R 3.061 -30.031 -62.304 1.161 -0.508 1.003 C9 G7C 7 G7C C10 C8 C 0 1 N N N 3.067 -30.698 -60.951 2.404 0.371 0.847 C10 G7C 8 G7C C11 C9 C 0 1 N N N 0.493 -27.361 -63.693 -2.591 0.344 0.862 C11 G7C 9 G7C C12 C10 C 0 1 N N N -3.302 -26.446 -64.756 -7.672 -0.922 0.193 C12 G7C 10 G7C O14 O1 O 0 1 N N N -5.021 -25.228 -65.893 -8.283 -3.012 1.241 O14 G7C 11 G7C C15 C11 C 0 1 N N N 7.722 -32.269 -60.941 7.490 -0.879 0.189 C15 G7C 12 G7C C16 C12 C 0 1 N N S 8.344 -33.347 -61.793 8.191 -2.235 0.094 C16 G7C 13 G7C C17 C13 C 0 1 N N N 9.050 -32.769 -63.026 9.651 -2.027 -0.316 C17 G7C 14 G7C C20 C14 C 0 1 N N N -6.807 -27.326 -66.196 -10.514 -3.417 -0.533 C20 G7C 15 G7C O21 O2 O 0 1 N N N -1.959 -25.980 -61.179 -5.615 0.861 2.023 O21 G7C 16 G7C O22 O3 O 0 1 N N N -1.252 -25.052 -63.551 -5.329 1.034 -0.479 O22 G7C 17 G7C C1 C15 C 0 1 N N S 3.838 -26.940 -62.464 0.265 2.500 -0.103 C1 G7C 18 G7C O1 O4 O 0 1 N N N 4.927 -27.835 -62.649 -0.801 3.163 0.579 O1 G7C 19 G7C C3 C16 C 0 1 N N S 6.660 -26.166 -62.142 -0.372 5.288 -0.489 C3 G7C 20 G7C N1 N1 N 0 1 N N N 3.228 -24.803 -61.325 1.615 2.520 -2.144 N1 G7C 21 G7C O2 O5 O 0 1 N N N 5.923 -24.324 -60.753 0.916 5.286 -2.537 O2 G7C 22 G7C O3 O6 O 0 1 N N N 7.798 -25.500 -62.693 -0.070 6.661 -0.231 O3 G7C 23 G7C O4 O7 O 0 1 N N N 2.698 -27.527 -61.881 -0.070 1.123 -0.287 O4 G7C 24 G7C O5 O8 O 0 1 N N N 4.054 -31.762 -60.937 3.568 -0.456 0.785 O5 G7C 25 G7C O6 O9 O 0 1 N N N -0.545 -27.332 -62.657 -3.746 -0.491 0.761 O6 G7C 26 G7C P1 P1 P 0 1 N N N -1.676 -26.184 -62.647 -5.244 0.091 0.658 P1 G7C 27 G7C O7 O10 O 0 1 N N N -2.996 -26.779 -63.357 -6.277 -1.122 0.428 O7 G7C 28 G7C C13 C17 C 0 1 N N R -4.794 -26.283 -64.957 -8.359 -2.278 0.018 C13 G7C 29 G7C C14 C18 C 0 1 N N S -5.482 -27.557 -65.460 -9.826 -2.061 -0.357 C14 G7C 30 G7C P2 P2 P 0 1 N N N 5.357 -31.556 -60.016 5.056 0.135 0.622 P2 G7C 31 G7C O8 O11 O 0 1 N N N 6.385 -32.674 -60.536 6.101 -1.078 0.458 O8 G7C 32 G7C O9 O12 O 0 1 N N N 6.890 -28.955 -64.615 -1.850 4.529 2.880 O9 G7C 33 G7C O10 O13 O 0 1 N N N 2.704 -31.088 -63.196 1.202 -1.169 2.270 O10 G7C 34 G7C O11 O14 O 0 1 N N N 0.391 -29.737 -63.512 -1.360 -1.287 2.152 O11 G7C 35 G7C O12 O15 O 0 1 N N N 9.249 -34.094 -60.972 8.142 -2.887 1.364 O12 G7C 36 G7C O17 O16 O 0 1 N N N -5.716 -28.407 -64.341 -9.902 -1.327 -1.581 O17 G7C 37 G7C O20 O17 O 0 1 N N N 4.949 -31.865 -58.602 5.437 0.998 1.927 O20 G7C 38 G7C O23 O18 O 0 1 N N N 5.979 -30.219 -60.330 5.114 1.002 -0.577 O23 G7C 39 G7C C22 C19 C 0 1 N N N 2.287 -24.857 -60.370 1.422 1.400 -2.868 C22 G7C 40 G7C C23 C20 C 0 1 N N N 1.085 -23.993 -60.605 2.586 0.742 -3.564 C23 G7C 41 G7C O24 O19 O 0 1 N N N 2.385 -25.599 -59.386 0.312 0.920 -2.959 O24 G7C 42 G7C H1 H1 H 0 1 N N N 5.932 -26.699 -64.089 0.345 4.650 1.441 H1 G7C 43 G7C H2 H2 H 0 1 N N N 5.405 -24.538 -62.746 1.709 4.760 -0.702 H2 G7C 44 G7C H3 H3 H 0 1 N N N 4.393 -26.303 -60.500 -0.414 3.047 -2.075 H3 G7C 45 G7C H4 H4 H 0 1 N N N 7.084 -29.044 -62.558 -1.602 6.216 1.712 H4 G7C 46 G7C H5 H5 H 0 1 N N N 8.161 -27.874 -63.393 -2.663 4.960 1.030 H5 G7C 47 G7C H6 H6 H 0 1 N N N 1.354 -29.048 -61.516 -0.120 1.042 1.777 H6 G7C 48 G7C H7 H7 H 0 1 N N N 1.974 -28.733 -64.434 -1.310 -1.206 0.088 H7 G7C 49 G7C H8 H8 H 0 1 N N N 4.076 -29.672 -62.531 1.139 -1.251 0.206 H8 G7C 50 G7C H9 H9 H 0 1 N N N 3.317 -29.956 -60.178 2.323 0.954 -0.070 H9 G7C 51 G7C H10 H10 H 0 1 N N N 2.072 -31.119 -60.746 2.482 1.045 1.701 H10 G7C 52 G7C H11 H11 H 0 1 N N N 1.158 -26.493 -63.570 -2.664 0.959 1.759 H11 G7C 53 G7C H12 H12 H 0 1 N N N 0.021 -27.323 -64.686 -2.531 0.988 -0.016 H12 G7C 54 G7C H13 H13 H 0 1 N N N -2.937 -27.254 -65.407 -8.112 -0.399 1.042 H13 G7C 55 G7C H14 H14 H 0 1 N N N -2.798 -25.505 -65.021 -7.806 -0.327 -0.710 H14 G7C 56 G7C H15 H15 H 0 1 N N N -4.597 -24.435 -65.586 -8.708 -2.572 1.991 H15 G7C 57 G7C H16 H16 H 0 1 N N N 8.342 -32.107 -60.047 7.936 -0.295 0.995 H16 G7C 58 G7C H17 H17 H 0 1 N N N 7.662 -31.335 -61.519 7.604 -0.343 -0.753 H17 G7C 59 G7C H18 H18 H 0 1 N N N 7.542 -34.012 -62.144 7.689 -2.852 -0.651 H18 G7C 60 G7C H19 H19 H 0 1 N N N 9.834 -32.112 -62.713 10.153 -1.410 0.429 H19 G7C 61 G7C H22 H22 H 0 1 N N N -6.641 -26.688 -67.039 -10.535 -3.940 0.423 H22 G7C 62 G7C H25 H25 H 0 1 N N N -1.827 -25.066 -60.955 -5.580 0.303 2.811 H25 G7C 63 G7C H26 H26 H 0 1 N N N 3.572 -26.472 -63.423 1.178 2.576 0.488 H26 G7C 64 G7C H27 H27 H 0 1 N N N 6.935 -26.676 -61.207 -1.288 5.219 -1.076 H27 G7C 65 G7C H28 H28 H 0 1 N N N 3.227 -24.027 -61.956 2.503 2.903 -2.071 H28 G7C 66 G7C H29 H29 H 0 1 N N N 5.227 -23.700 -60.587 1.106 6.232 -2.484 H29 G7C 67 G7C H30 H30 H 0 1 N N N 8.120 -24.856 -62.073 -0.758 7.128 0.263 H30 G7C 68 G7C H31 H31 H 0 1 N N N -5.243 -26.014 -63.990 -7.861 -2.838 -0.774 H31 G7C 69 G7C H32 H32 H 0 1 N N N -4.794 -28.058 -66.157 -10.325 -1.501 0.434 H32 G7C 70 G7C H33 H33 H 0 1 N N N 7.530 -29.643 -64.754 -2.585 4.859 3.415 H33 G7C 71 G7C H34 H34 H 0 1 N N N 3.347 -31.785 -63.135 1.223 -0.568 3.027 H34 G7C 72 G7C H35 H35 H 0 1 N N N 0.878 -30.549 -63.433 -1.385 -0.747 2.954 H35 G7C 73 G7C H36 H36 H 0 1 N N N 8.783 -34.438 -60.219 8.571 -2.394 2.077 H36 G7C 74 G7C H37 H37 H 0 1 N N N -4.899 -28.555 -63.879 -9.478 -1.767 -2.331 H37 G7C 75 G7C H38 H38 H 0 1 N N N 5.150 -31.123 -58.044 5.419 0.493 2.751 H38 G7C 76 G7C H39 H39 H 0 1 N N N 0.362 -24.140 -59.789 3.335 0.453 -2.826 H39 G7C 77 G7C H40 H40 H 0 1 N N N 1.393 -22.937 -60.637 2.238 -0.144 -4.095 H40 G7C 78 G7C H41 H41 H 0 1 N N N 0.618 -24.267 -61.562 3.027 1.442 -4.274 H41 G7C 79 G7C C18 C21 C 0 1 N N N ? ? ? -11.945 -3.203 -1.028 C18 G7C 80 G7C C21 C22 C 0 1 N N N ? ? ? 10.352 -3.384 -0.412 C21 G7C 81 G7C C25 C25 C 0 1 N N N ? ? ? 11.811 -3.176 -0.822 C25 G7C 82 G7C O13 O20 O 0 1 N N N ? ? ? -9.791 -4.197 -1.487 O13 G7C 83 G7C O16 O21 O 0 1 N N N ? ? ? -12.624 -4.459 -1.081 O16 G7C 84 G7C O19 O22 O 0 1 N N N ? ? ? 9.700 -1.375 -1.587 O19 G7C 85 G7C O26 O26 O 0 1 N N N ? ? ? 10.302 -4.036 0.859 O26 G7C 86 G7C O29 O29 O 0 1 N N N ? ? ? 12.435 -4.445 -1.024 O29 G7C 87 G7C H20 H20 H 0 1 N N N ? ? ? -12.470 -2.534 -0.345 H20 G7C 88 G7C H21 H21 H 0 1 N N N ? ? ? -11.923 -2.760 -2.024 H21 G7C 89 G7C H23 H23 H 0 1 N N N ? ? ? 9.849 -4.001 -1.156 H23 G7C 90 G7C H24 H24 H 0 1 N N N ? ? ? 11.850 -2.600 -1.747 H24 G7C 91 G7C H42 H42 H 0 1 N N N ? ? ? 12.336 -2.634 -0.035 H42 G7C 92 G7C H43 H43 H 0 1 N N N ? ? ? -9.732 -3.792 -2.363 H43 G7C 93 G7C H44 H44 H 0 1 N N N ? ? ? -13.539 -4.399 -1.388 H44 G7C 94 G7C H45 H45 H 0 1 N N N ? ? ? 9.271 -1.868 -2.299 H45 G7C 95 G7C H46 H46 H 0 1 N N N ? ? ? 10.731 -3.542 1.571 H46 G7C 96 G7C H47 H47 H 0 1 N N N ? ? ? 13.364 -4.390 -1.286 H47 G7C 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G7C C20 C14 SING N N 1 G7C O14 C13 SING N N 2 G7C C14 C13 SING N N 3 G7C C14 O17 SING N N 4 G7C C13 C12 SING N N 5 G7C C12 O7 SING N N 6 G7C O9 C6 SING N N 7 G7C C11 C8 SING N N 8 G7C C11 O6 SING N N 9 G7C C8 O11 SING N N 10 G7C C8 C7 SING N N 11 G7C O22 P1 DOUB N N 12 G7C C6 C2 SING N N 13 G7C O7 P1 SING N N 14 G7C O10 C9 SING N N 15 G7C C2 O1 SING N N 16 G7C C2 C3 SING N N 17 G7C C17 C16 SING N N 18 G7C O3 C3 SING N N 19 G7C O6 P1 SING N N 20 G7C O1 C1 SING N N 21 G7C P1 O21 SING N N 22 G7C C1 O4 SING N N 23 G7C C1 C5 SING N N 24 G7C C9 C7 SING N N 25 G7C C9 C10 SING N N 26 G7C C7 O4 SING N N 27 G7C C3 C4 SING N N 28 G7C C4 C5 SING N N 29 G7C C4 O2 SING N N 30 G7C C16 O12 SING N N 31 G7C C16 C15 SING N N 32 G7C C5 N1 SING N N 33 G7C N1 C22 SING N N 34 G7C C10 O5 SING N N 35 G7C C15 O8 SING N N 36 G7C O5 P2 SING N N 37 G7C C23 C22 SING N N 38 G7C O8 P2 SING N N 39 G7C C22 O24 DOUB N N 40 G7C O23 P2 DOUB N N 41 G7C P2 O20 SING N N 42 G7C C2 H1 SING N N 43 G7C C4 H2 SING N N 44 G7C C5 H3 SING N N 45 G7C C6 H4 SING N N 46 G7C C6 H5 SING N N 47 G7C C7 H6 SING N N 48 G7C C8 H7 SING N N 49 G7C C9 H8 SING N N 50 G7C C10 H9 SING N N 51 G7C C10 H10 SING N N 52 G7C C11 H11 SING N N 53 G7C C11 H12 SING N N 54 G7C C12 H13 SING N N 55 G7C C12 H14 SING N N 56 G7C O14 H15 SING N N 57 G7C C15 H16 SING N N 58 G7C C15 H17 SING N N 59 G7C C16 H18 SING N N 60 G7C C17 H19 SING N N 61 G7C C20 H22 SING N N 62 G7C O21 H25 SING N N 63 G7C C1 H26 SING N N 64 G7C C3 H27 SING N N 65 G7C N1 H28 SING N N 66 G7C O2 H29 SING N N 67 G7C O3 H30 SING N N 68 G7C C13 H31 SING N N 69 G7C C14 H32 SING N N 70 G7C O9 H33 SING N N 71 G7C O10 H34 SING N N 72 G7C O11 H35 SING N N 73 G7C O12 H36 SING N N 74 G7C O17 H37 SING N N 75 G7C O20 H38 SING N N 76 G7C C23 H39 SING N N 77 G7C C23 H40 SING N N 78 G7C C23 H41 SING N N 79 G7C C18 C20 SING N N 80 G7C C21 C17 SING N N 81 G7C C25 C21 SING N N 82 G7C O13 C20 SING N N 83 G7C O16 C18 SING N N 84 G7C O19 C17 SING N N 85 G7C O26 C21 SING N N 86 G7C C25 O29 SING N N 87 G7C C18 H20 SING N N 88 G7C C18 H21 SING N N 89 G7C C21 H23 SING N N 90 G7C C25 H24 SING N N 91 G7C C25 H42 SING N N 92 G7C O13 H43 SING N N 93 G7C O16 H44 SING N N 94 G7C O19 H45 SING N N 95 G7C O26 H46 SING N N 96 G7C O29 H47 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G7C InChI InChI 1.06 "InChI=1S/C23H47NO24P2/c1-9(28)24-17-21(38)20(37)16(4-27)47-23(17)48-22(14(33)7-45-49(39,40)43-5-12(31)18(35)10(29)2-25)15(34)8-46-50(41,42)44-6-13(32)19(36)11(30)3-26/h10-23,25-27,29-38H,2-8H2,1H3,(H,24,28)(H,39,40)(H,41,42)/t10?,11?,12-,13+,14+,15-,16-,17-,18+,19?,20-,21-,22+,23+/m1/s1" G7C InChIKey InChI 1.06 UQOCSXCRLULBKU-APIFBWIWSA-N G7C SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@@H]([C@@H](O)CO[P](O)(=O)OC[C@@H](O)[C@@H](O)C(O)CO)[C@H](O)CO[P](O)(=O)OC[C@H](O)C(O)C(O)CO" G7C SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]([CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)C(O)CO)[CH](O)CO[P](O)(=O)OC[CH](O)C(O)C(O)CO" G7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC([C@@H](COP(=O)(O)OC[C@@H]([C@H]([C@H](CO)O)O)O)O)[C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)CO)O)O" G7C SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OC(C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id G7C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G7C "Create component" 2022-01-27 PDBE G7C "Modify descriptor" 2022-08-22 RCSB G7C "Initial release" 2022-08-31 RCSB #