data_G7M # _chem_comp.id G7M _chem_comp.name "N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H17 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.255 _chem_comp.one_letter_code G _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C0A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G7M OP3 O3P O 0 1 N Y N N N N 58.840 15.529 32.630 5.504 -1.821 -1.519 OP3 G7M 1 G7M P P P 0 1 N N N N N N 58.605 14.167 31.972 5.136 -0.897 -0.253 P G7M 2 G7M OP1 O1P O 0 1 N N N N N N 59.761 13.278 32.240 4.940 -1.750 0.941 OP1 G7M 3 G7M OP2 O2P O 0 1 N N N N N N 57.252 13.620 32.219 6.336 0.141 0.021 OP2 G7M 4 G7M "O5'" "O5'" O 0 1 N N N N N N 58.749 14.495 30.412 3.781 -0.083 -0.558 "O5'" G7M 5 G7M "C5'" "C5'" C 0 1 N N N N N N 57.875 15.487 29.832 3.135 0.746 0.410 "C5'" G7M 6 G7M "C4'" "C4'" C 0 1 N N R N N N 58.051 15.472 28.316 1.881 1.368 -0.206 "C4'" G7M 7 G7M "O4'" "O4'" O 0 1 N N N N N N 59.467 15.655 28.040 0.913 0.342 -0.484 "O4'" G7M 8 G7M "C3'" "C3'" C 0 1 N N S N N N 57.684 14.171 27.626 1.236 2.347 0.795 "C3'" G7M 9 G7M "O3'" "O3'" O 0 1 N N N N N N 56.290 14.094 27.356 1.188 3.665 0.244 "O3'" G7M 10 G7M "C2'" "C2'" C 0 1 N N R N N N 58.566 14.207 26.388 -0.195 1.792 1.000 "C2'" G7M 11 G7M "O2'" "O2'" O 0 1 N N N N N N 57.948 14.924 25.335 -1.151 2.853 1.044 "O2'" G7M 12 G7M "C1'" "C1'" C 0 1 N N R N N N 59.849 14.853 26.927 -0.391 0.923 -0.269 "C1'" G7M 13 G7M N9 N9 N 0 1 Y N N N N N 60.883 13.915 27.418 -1.389 -0.122 -0.028 N9 G7M 14 G7M C8 C8 C 0 1 Y N N N N N 60.882 13.144 28.565 -1.143 -1.381 0.438 C8 G7M 15 G7M N7 N7 N 1 1 Y N N N N N 61.966 12.425 28.723 -2.259 -2.043 0.531 N7 G7M 16 G7M CN7 CN7 C 0 1 N N N N N N 62.360 11.623 29.906 -2.387 -3.427 0.995 CN7 G7M 17 G7M C5 C5 C 0 1 Y N N N N N 62.734 12.737 27.608 -3.284 -1.252 0.132 C5 G7M 18 G7M C6 C6 C 0 1 N N N N N N 64.023 12.271 27.229 -4.683 -1.432 0.025 C6 G7M 19 G7M O6 O6 O 0 1 N N N N N N 64.764 11.483 27.814 -5.202 -2.492 0.329 O6 G7M 20 G7M N1 N1 N 0 1 N N N N N N 64.426 12.838 26.014 -5.431 -0.399 -0.423 N1 G7M 21 G7M C2 C2 C 0 1 N N N N N N 63.676 13.737 25.267 -4.840 0.783 -0.761 C2 G7M 22 G7M N2 N2 N 0 1 N N N N N N 64.247 14.147 24.139 -5.624 1.814 -1.212 N2 G7M 23 G7M N3 N3 N 0 1 N N N N N N 62.485 14.171 25.621 -3.542 0.962 -0.665 N3 G7M 24 G7M C4 C4 C 0 1 Y N N N N N 62.081 13.635 26.801 -2.739 -0.013 -0.225 C4 G7M 25 G7M HOP3 HOP3 H 0 0 N N N N N N 59.679 15.525 33.076 6.312 -2.341 -1.405 HOP3 G7M 26 G7M HOP2 HOP2 H 0 0 N N N N N N 57.324 12.726 32.532 6.520 0.734 -0.721 HOP2 G7M 27 G7M "H5'" "H5'" H 0 1 N N N N N N 56.830 15.253 30.085 2.856 0.144 1.275 "H5'" G7M 28 G7M "H5''" "H5''" H 0 0 N N N N N N 58.133 16.482 30.224 3.817 1.537 0.724 "H5''" G7M 29 G7M "H4'" "H4'" H 0 1 N N N N N N 57.469 16.295 27.876 2.140 1.892 -1.125 "H4'" G7M 30 G7M "H3'" "H3'" H 0 1 N N N N N N 57.996 13.329 28.262 1.786 2.347 1.736 "H3'" G7M 31 G7M "HO3'" H3T H 0 0 N Y N N N N 56.095 13.270 26.925 0.791 4.322 0.832 "HO3'" G7M 32 G7M "H2'" "H2'" H 0 1 N N N N N N 58.790 13.176 26.075 -0.250 1.183 1.902 "H2'" G7M 33 G7M "HO2'" "HO2'" H 0 0 N N N N N N 58.520 14.930 24.577 -1.014 3.476 1.771 "HO2'" G7M 34 G7M "H1'" "H1'" H 0 1 N N N N N N 60.280 15.486 26.137 -0.680 1.543 -1.117 "H1'" G7M 35 G7M H8 H8 H 0 1 N N N N N N 60.062 13.135 29.268 -0.167 -1.770 0.691 H8 G7M 36 G7M HN71 HN71 H 0 0 N N N N N N 63.329 11.139 29.715 -2.536 -3.435 2.075 HN71 G7M 37 G7M HN72 HN72 H 0 0 N N N N N N 62.445 12.281 30.783 -3.241 -3.896 0.507 HN72 G7M 38 G7M HN73 HN73 H 0 0 N N N N N N 61.598 10.853 30.097 -1.480 -3.978 0.749 HN73 G7M 39 G7M H1 H1 H 0 1 N N N N N N 65.322 12.576 25.657 -6.392 -0.498 -0.506 H1 G7M 40 G7M H21 H21 H 0 1 N N N N N N 63.771 14.795 23.545 -6.584 1.697 -1.288 H21 G7M 41 G7M H22 H22 H 0 1 N N N N N N 65.153 13.807 23.885 -5.219 2.661 -1.456 H22 G7M 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G7M OP3 P SING N N 1 G7M OP3 HOP3 SING N N 2 G7M P OP1 DOUB N N 3 G7M P OP2 SING N N 4 G7M P "O5'" SING N N 5 G7M OP2 HOP2 SING N N 6 G7M "O5'" "C5'" SING N N 7 G7M "C5'" "C4'" SING N N 8 G7M "C5'" "H5'" SING N N 9 G7M "C5'" "H5''" SING N N 10 G7M "C4'" "O4'" SING N N 11 G7M "C4'" "C3'" SING N N 12 G7M "C4'" "H4'" SING N N 13 G7M "O4'" "C1'" SING N N 14 G7M "C3'" "O3'" SING N N 15 G7M "C3'" "C2'" SING N N 16 G7M "C3'" "H3'" SING N N 17 G7M "O3'" "HO3'" SING N N 18 G7M "C2'" "O2'" SING N N 19 G7M "C2'" "C1'" SING N N 20 G7M "C2'" "H2'" SING N N 21 G7M "O2'" "HO2'" SING N N 22 G7M "C1'" N9 SING N N 23 G7M "C1'" "H1'" SING N N 24 G7M N9 C8 SING Y N 25 G7M N9 C4 SING Y N 26 G7M C8 N7 DOUB Y N 27 G7M C8 H8 SING N N 28 G7M N7 CN7 SING N N 29 G7M N7 C5 SING Y N 30 G7M CN7 HN71 SING N N 31 G7M CN7 HN72 SING N N 32 G7M CN7 HN73 SING N N 33 G7M C5 C6 SING N N 34 G7M C5 C4 DOUB Y N 35 G7M C6 O6 DOUB N N 36 G7M C6 N1 SING N N 37 G7M N1 C2 SING N N 38 G7M N1 H1 SING N N 39 G7M C2 N2 SING N N 40 G7M C2 N3 DOUB N N 41 G7M N2 H21 SING N N 42 G7M N2 H22 SING N N 43 G7M N3 C4 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G7M SMILES ACDLabs 12.01 "O=P(O)(O)OCC1OC(n2c[n+](C)c3c2N=C(N)NC3=O)C(O)C1O" G7M InChI InChI 1.06 "InChI=1S/C11H16N5O8P/c1-15-3-16(8-5(15)9(19)14-11(12)13-8)10-7(18)6(17)4(24-10)2-23-25(20,21)22/h3-4,6-7,10,17-18H,2H2,1H3,(H4-,12,13,14,19,20,21,22)/p+1/t4-,6-,7-,10-/m1/s1" G7M InChIKey InChI 1.06 AOKQNZVJJXPUQA-KQYNXXCUSA-O G7M SMILES_CANONICAL CACTVS 3.385 "C[n+]1cn([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3N=C(N)NC(=O)c13" G7M SMILES CACTVS 3.385 "C[n+]1cn([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3N=C(N)NC(=O)c13" G7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" G7M SMILES "OpenEye OEToolkits" 2.0.7 "C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G7M "SYSTEMATIC NAME" ACDLabs 12.01 ;7-methylguanosine 5'-(dihydrogen phosphate) ; G7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G7M "Create component" 1999-07-08 RCSB G7M "Modify descriptor" 2011-06-04 RCSB G7M "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id G7M _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NH1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #