data_G7U
#
_chem_comp.id G7U
_chem_comp.name "N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-{2-[(2R)-2-hydroxy-4-oxododecanamido]ethyl}-beta-alaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H44 N3 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-04-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 553.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G7U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8SMS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G7U C2 C1 C 0 1 N N N N N N 11.289 15.805 21.598 -13.757 4.398 0.730 C2 G7U 1
G7U C3 C2 C 0 1 N N N N N N 11.300 16.726 20.394 -13.170 2.989 0.833 C3 G7U 2
G7U C4 C3 C 0 1 N N N N N N 12.628 17.423 20.149 -11.736 2.993 0.298 C4 G7U 3
G7U C1 C4 C 0 1 N N N N N N 10.035 14.974 21.722 -15.190 4.393 1.264 C1 G7U 4
G7U C10 C5 C 0 1 N N N N N N 14.388 17.198 13.712 -5.707 -1.468 -0.927 C10 G7U 5
G7U C11 C6 C 0 1 N N R N N N 14.444 16.395 12.408 -5.369 -2.946 -0.715 C11 G7U 6
G7U C12 C7 C 0 1 N N N N N N 14.608 17.340 11.208 -3.923 -3.185 -1.064 C12 G7U 7
G7U C13 C8 C 0 1 N N N N N N 13.716 18.319 9.203 -1.543 -2.842 -0.670 C13 G7U 8
G7U C14 C9 C 0 1 N N N N N N 14.367 17.735 7.975 -0.649 -2.079 0.309 C14 G7U 9
G7U C15 C10 C 0 1 N N N N N N 13.913 15.570 6.905 1.731 -1.735 0.702 C15 G7U 10
G7U C16 C11 C 0 1 N N N N N N 12.856 14.625 6.371 3.178 -1.975 0.354 C16 G7U 11
G7U C17 C12 C 0 1 N N N N N N 11.969 14.134 7.490 4.071 -1.212 1.333 C17 G7U 12
G7U C18 C13 C 0 1 N N N N N N 11.024 12.018 6.647 6.451 -0.868 1.726 C18 G7U 13
G7U C19 C14 C 0 1 N N R N N N 9.738 11.278 6.301 7.896 -1.196 1.449 C19 G7U 14
G7U C20 C15 C 0 1 N N N N N N 9.322 10.226 7.379 8.340 -0.496 0.163 C20 G7U 15
G7U C21 C16 C 0 1 N N N N N N 9.333 10.861 8.772 9.841 -0.711 -0.043 C21 G7U 16
G7U C22 C17 C 0 1 N N N N N N 10.291 9.038 7.373 7.573 -1.081 -1.026 C22 G7U 17
G7U C23 C18 C 0 1 N N N N N N 7.915 9.731 7.070 8.049 1.002 0.270 C23 G7U 18
G7U C5 C19 C 0 1 N N N N N N 12.654 18.274 18.885 -11.149 1.584 0.401 C5 G7U 19
G7U C6 C20 C 0 1 N N N N N N 12.079 17.614 17.638 -9.715 1.589 -0.133 C6 G7U 20
G7U C7 C21 C 0 1 N N N N N N 12.793 18.082 16.374 -9.128 0.180 -0.030 C7 G7U 21
G7U C8 C22 C 0 1 N N N N N N 12.221 17.527 15.084 -7.694 0.184 -0.565 C8 G7U 22
G7U C9 C23 C 0 1 N N N N N N 13.057 17.898 13.888 -7.116 -1.204 -0.463 C9 G7U 23
G7U N1 N1 N 0 1 N N N N N N 13.628 17.369 10.305 -2.949 -2.609 -0.332 N1 G7U 24
G7U N2 N2 N 0 1 N N N N N N 13.477 16.730 7.406 0.757 -2.312 -0.030 N2 G7U 25
G7U N3 N3 N 0 1 N N N N N N 10.876 13.287 7.026 5.477 -1.445 0.994 N3 G7U 26
G7U O1 O1 O 0 1 N N N N N N 12.679 18.751 13.103 -7.782 -2.103 -0.010 O1 G7U 27
G7U O1P O2 O 0 1 N N N N N N 7.418 9.050 3.321 8.970 3.970 -0.062 O1P G7U 28
G7U O2 O3 O 0 1 N N N N N N 13.301 15.559 12.319 -6.201 -3.749 -1.555 O2 G7U 29
G7U O3 O4 O 0 1 N N N N N N 15.622 18.027 11.112 -3.635 -3.897 -2.003 O3 G7U 30
G7U O4 O5 O 0 1 N N N N N N 15.123 15.279 6.894 1.443 -1.024 1.641 O4 G7U 31
G7U O5 O6 O 0 1 N N N N N N 12.110 11.441 6.584 6.165 -0.086 2.608 O5 G7U 32
G7U O6 O7 O 0 1 N N N N N N 8.686 12.216 6.157 8.704 -0.746 2.539 O6 G7U 33
G7U O7 O8 O 0 1 N N N N N N 7.957 9.181 5.728 8.464 1.655 -0.931 O7 G7U 34
G7U O2P O9 O 0 1 N N N N N N 6.906 11.199 4.510 6.745 3.625 -1.204 O2P G7U 35
G7U P1 P1 P 0 1 N N N N N N 6.892 9.674 4.608 8.307 3.240 -1.166 P1 G7U 36
G7U H1 H1 H 0 1 N N N N N N 12.149 15.124 21.521 -13.152 5.088 1.318 H1 G7U 37
G7U H2 H2 H 0 1 N N N N N N 11.388 16.420 22.505 -13.759 4.715 -0.313 H2 G7U 38
G7U H3 H3 H 0 1 N N N N N N 10.529 17.497 20.543 -13.167 2.671 1.875 H3 G7U 39
G7U H4 H4 H 0 1 N N N N N N 11.055 16.130 19.503 -13.774 2.299 0.244 H4 G7U 40
G7U H5 H5 H 0 1 N N N N N N 13.412 16.656 20.066 -11.738 3.311 -0.744 H5 G7U 41
G7U H6 H6 H 0 1 N N N N N N 12.842 18.074 21.010 -11.131 3.683 0.887 H6 G7U 42
G7U H7 H7 H 0 1 N N N N N N 10.104 14.336 22.615 -15.795 3.704 0.675 H7 G7U 43
G7U H8 H8 H 0 1 N N N N N N 9.163 15.638 21.812 -15.188 4.076 2.307 H8 G7U 44
G7U H9 H9 H 0 1 N N N N N N 9.924 14.342 20.828 -15.609 5.397 1.191 H9 G7U 45
G7U H10 H10 H 0 1 N N N N N N 14.544 16.513 14.558 -5.014 -0.852 -0.354 H10 G7U 46
G7U H11 H11 H 0 1 N N N N N N 15.188 17.953 13.699 -5.621 -1.224 -1.986 H11 G7U 47
G7U H12 H12 H 0 1 N N N N N N 15.343 15.762 12.451 -5.541 -3.212 0.328 H12 G7U 48
G7U H13 H13 H 0 1 N N N N N N 14.306 19.187 9.534 -1.351 -2.493 -1.685 H13 G7U 49
G7U H14 H14 H 0 1 N N N N N N 12.699 18.646 8.939 -1.325 -3.908 -0.605 H14 G7U 50
G7U H15 H15 H 0 1 N N N N N N 15.324 17.268 8.250 -0.867 -1.012 0.244 H15 G7U 51
G7U H16 H16 H 0 1 N N N N N N 14.546 18.531 7.237 -0.841 -2.427 1.324 H16 G7U 52
G7U H17 H17 H 0 1 N N N N N N 12.241 15.153 5.627 3.395 -3.041 0.419 H17 G7U 53
G7U H18 H18 H 0 1 N N N N N N 13.348 13.764 5.895 3.369 -1.626 -0.661 H18 G7U 54
G7U H19 H19 H 0 1 N N N N N N 12.584 13.556 8.196 3.854 -0.145 1.268 H19 G7U 55
G7U H20 H20 H 0 1 N N N N N N 11.541 15.006 8.005 3.879 -1.560 2.348 H20 G7U 56
G7U H21 H21 H 0 1 N N N N N N 9.892 10.744 5.352 8.009 -2.274 1.334 H21 G7U 57
G7U H22 H22 H 0 1 N N N N N N 9.039 10.110 9.520 10.060 -1.779 -0.026 H22 G7U 58
G7U H23 H23 H 0 1 N N N N N N 10.345 11.228 9.000 10.139 -0.294 -1.005 H23 G7U 59
G7U H24 H24 H 0 1 N N N N N N 8.624 11.701 8.797 10.392 -0.214 0.756 H24 G7U 60
G7U H25 H25 H 0 1 N N N N N N 9.983 8.309 8.137 6.515 -0.836 -0.931 H25 G7U 61
G7U H26 H26 H 0 1 N N N N N N 10.278 8.559 6.383 7.962 -0.658 -1.952 H26 G7U 62
G7U H27 H27 H 0 1 N N N N N N 11.308 9.393 7.595 7.696 -2.164 -1.040 H27 G7U 63
G7U H28 H28 H 0 1 N N N N N N 7.200 10.566 7.116 6.980 1.155 0.417 H28 G7U 64
G7U H29 H29 H 0 1 N N N N N N 7.619 8.954 7.790 8.595 1.418 1.117 H29 G7U 65
G7U H30 H30 H 0 1 N N N N N N 13.701 18.539 18.676 -11.147 1.267 1.444 H30 G7U 66
G7U H31 H31 H 0 1 N N N N N N 12.076 19.189 19.081 -11.754 0.895 -0.187 H31 G7U 67
G7U H32 H32 H 0 1 N N N N N N 11.012 17.868 17.560 -9.717 1.906 -1.176 H32 G7U 68
G7U H33 H33 H 0 1 N N N N N N 12.191 16.523 17.728 -9.110 2.279 0.455 H33 G7U 69
G7U H34 H34 H 0 1 N N N N N N 13.847 17.775 16.442 -9.126 -0.138 1.013 H34 G7U 70
G7U H35 H35 H 0 1 N N N N N N 12.732 19.180 16.332 -9.733 -0.510 -0.619 H35 G7U 71
G7U H36 H36 H 0 1 N N N N N N 11.206 17.927 14.945 -7.696 0.502 -1.607 H36 G7U 72
G7U H37 H37 H 0 1 N N N N N N 12.176 16.430 15.159 -7.089 0.874 0.024 H37 G7U 73
G7U H38 H38 H 0 1 N N N N N N 12.846 16.750 10.382 -3.179 -2.040 0.419 H38 G7U 74
G7U H39 H39 H 0 1 N N N N N N 12.495 16.917 7.390 0.987 -2.881 -0.781 H39 G7U 75
G7U H40 H40 H 0 1 N N N N N N 9.959 13.683 6.990 5.707 -2.014 0.243 H40 G7U 76
G7U H42 H42 H 0 1 N N N N N N 13.256 15.001 13.087 -6.101 -3.566 -2.499 H42 G7U 77
G7U H43 H43 H 0 1 N N N N N N 7.881 11.759 5.941 8.653 0.206 2.700 H43 G7U 78
G7U H44 H44 H 0 1 N N N N N N 7.242 11.459 3.660 6.247 3.183 -1.905 H44 G7U 79
G7U O3P O3P O 0 1 N Y N N N N 5.389 9.360 4.882 8.994 3.645 -2.566 O3P G7U 80
G7U H41 H41 H 0 1 N N N N N N 5.045 8.818 4.181 8.937 4.588 -2.773 H41 G7U 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G7U O1P P1 DOUB N N 1
G7U O2P P1 SING N N 2
G7U P1 O7 SING N N 3
G7U O7 C23 SING N N 4
G7U O6 C19 SING N N 5
G7U C19 C18 SING N N 6
G7U C19 C20 SING N N 7
G7U C16 C15 SING N N 8
G7U C16 C17 SING N N 9
G7U O5 C18 DOUB N N 10
G7U C18 N3 SING N N 11
G7U O4 C15 DOUB N N 12
G7U C15 N2 SING N N 13
G7U N3 C17 SING N N 14
G7U C23 C20 SING N N 15
G7U C22 C20 SING N N 16
G7U C20 C21 SING N N 17
G7U N2 C14 SING N N 18
G7U C14 C13 SING N N 19
G7U C13 N1 SING N N 20
G7U N1 C12 SING N N 21
G7U O3 C12 DOUB N N 22
G7U C12 C11 SING N N 23
G7U O2 C11 SING N N 24
G7U C11 C10 SING N N 25
G7U O1 C9 DOUB N N 26
G7U C10 C9 SING N N 27
G7U C9 C8 SING N N 28
G7U C8 C7 SING N N 29
G7U C7 C6 SING N N 30
G7U C6 C5 SING N N 31
G7U C5 C4 SING N N 32
G7U C4 C3 SING N N 33
G7U C3 C2 SING N N 34
G7U C2 C1 SING N N 35
G7U C2 H1 SING N N 36
G7U C2 H2 SING N N 37
G7U C3 H3 SING N N 38
G7U C3 H4 SING N N 39
G7U C4 H5 SING N N 40
G7U C4 H6 SING N N 41
G7U C1 H7 SING N N 42
G7U C1 H8 SING N N 43
G7U C1 H9 SING N N 44
G7U C10 H10 SING N N 45
G7U C10 H11 SING N N 46
G7U C11 H12 SING N N 47
G7U C13 H13 SING N N 48
G7U C13 H14 SING N N 49
G7U C14 H15 SING N N 50
G7U C14 H16 SING N N 51
G7U C16 H17 SING N N 52
G7U C16 H18 SING N N 53
G7U C17 H19 SING N N 54
G7U C17 H20 SING N N 55
G7U C19 H21 SING N N 56
G7U C21 H22 SING N N 57
G7U C21 H23 SING N N 58
G7U C21 H24 SING N N 59
G7U C22 H25 SING N N 60
G7U C22 H26 SING N N 61
G7U C22 H27 SING N N 62
G7U C23 H28 SING N N 63
G7U C23 H29 SING N N 64
G7U C5 H30 SING N N 65
G7U C5 H31 SING N N 66
G7U C6 H32 SING N N 67
G7U C6 H33 SING N N 68
G7U C7 H34 SING N N 69
G7U C7 H35 SING N N 70
G7U C8 H36 SING N N 71
G7U C8 H37 SING N N 72
G7U N1 H38 SING N N 73
G7U N2 H39 SING N N 74
G7U N3 H40 SING N N 75
G7U O2 H42 SING N N 76
G7U O6 H43 SING N N 77
G7U O2P H44 SING N N 78
G7U P1 O3P SING N N 79
G7U O3P H41 SING N N 80
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G7U SMILES ACDLabs 12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCNC(=O)C(O)CC(=O)CCCCCCCC"
G7U InChI InChI 1.06 "InChI=1S/C23H44N3O10P/c1-4-5-6-7-8-9-10-17(27)15-18(28)21(31)26-14-13-24-19(29)11-12-25-22(32)20(30)23(2,3)16-36-37(33,34)35/h18,20,28,30H,4-16H2,1-3H3,(H,24,29)(H,25,32)(H,26,31)(H2,33,34,35)/t18-,20+/m1/s1"
G7U InChIKey InChI 1.06 BTRNTPSBBUMIHA-QUCCMNQESA-N
G7U SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCC(=O)C[C@@H](O)C(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"
G7U SMILES CACTVS 3.385 "CCCCCCCCC(=O)C[CH](O)C(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
G7U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC(=O)C[C@H](C(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)O"
G7U SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC(=O)CC(C(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G7U "SYSTEMATIC NAME" ACDLabs 12.01 "N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-{2-[(2R)-2-hydroxy-4-oxododecanamido]ethyl}-beta-alaninamide"
G7U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-[[(2~{R})-2-oxidanyl-4-oxidanylidene-dodecanoyl]amino]ethylamino]propyl]amino]butyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G7U "Create component" 2023-04-27 RCSB
G7U "Initial release" 2023-09-27 RCSB
G7U "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 G7U CYS None Crosslinker "Amino-acid side chain" "Any position" C10 SG ? ?
2 G7U SER None Crosslinker "Amino-acid side chain" "Any position" P1 OG ? ?
#