data_G85
#
_chem_comp.id G85
_chem_comp.name "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H48 N4 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-07-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 652.778
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G85
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3ZVF
_chem_comp.pdbx_subcomponent_list "PHQ RZ4 PHE CEV"
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G85 C17 C17 C 0 1 N N N N N N -13.263 -10.967 -13.641 -4.910 -0.082 1.005 C1 PHQ 1
G85 O19 O19 O 0 1 N N N N N N -12.419 -10.903 -12.754 -4.863 -0.269 2.204 O1 PHQ 2
G85 O15 O15 O 0 1 N N N N N N -14.158 -12.136 -13.634 -6.087 0.188 0.410 O2 PHQ 3
G85 C13 C13 C 0 1 N N N N N N -13.654 -13.345 -12.987 -7.260 0.241 1.265 C2 PHQ 4
G85 C4 C4 C 0 1 Y N N N N N -13.991 -14.686 -13.661 -8.475 0.553 0.431 C3 PHQ 5
G85 C2 C2 C 0 1 Y N N N N N -15.281 -15.294 -13.505 -9.213 -0.474 -0.128 C4 PHQ 6
G85 C1 C1 C 0 1 Y N N N N N -15.638 -16.522 -14.103 -10.328 -0.187 -0.893 C5 PHQ 7
G85 C10 C10 C 0 1 Y N N N N N -14.665 -17.169 -14.884 -10.708 1.126 -1.096 C6 PHQ 8
G85 C8 C8 C 0 1 Y N N N N N -13.384 -16.588 -15.057 -9.973 2.153 -0.533 C7 PHQ 9
G85 C6 C6 C 0 1 Y N N N N N -13.024 -15.356 -14.451 -8.859 1.867 0.232 C8 PHQ 10
G85 C31 C31 C 0 1 N N N N N N -13.213 -7.517 -14.442 -1.378 0.126 0.085 C RZ4 11
G85 N21 N21 N 0 1 N N N N N N -13.334 -10.008 -14.565 -3.782 -0.146 0.269 N RZ4 12
G85 O35 O35 O 0 1 N N N N N N -14.322 -7.398 -14.945 -1.623 0.717 -0.945 O RZ4 13
G85 C12 C12 C 0 1 N N N N N N -9.538 -8.957 -18.034 -3.271 -4.602 0.440 C1 RZ4 14
G85 C45 C45 C 0 1 N N N N N N -8.896 -10.996 -16.666 -0.789 -4.317 0.490 C2 RZ4 15
G85 C43 C43 C 0 1 N N N N N N -11.108 -10.938 -17.827 -1.986 -4.461 -1.698 C3 RZ4 16
G85 C23 C23 C 0 1 N N S N N N -12.466 -8.820 -14.580 -2.501 -0.440 0.915 CA RZ4 17
G85 C25 C25 C 0 1 N N N N N N -11.792 -8.793 -15.941 -2.329 -1.955 1.041 CB RZ4 18
G85 C29 C29 C 0 1 N N N N N N -10.046 -10.082 -17.112 -2.074 -3.953 -0.258 CE RZ4 19
G85 O27 O27 O 0 1 N N N N N N -10.559 -9.528 -15.870 -2.237 -2.534 -0.262 OG RZ4 20
G85 N33 N33 N 0 1 N N N N N N -12.655 -6.527 -13.767 -0.100 -0.025 0.488 N PHE 21
G85 C37 C37 C 0 1 N N S N N N -13.374 -5.268 -13.622 0.992 0.525 -0.319 CA PHE 22
G85 C39 C39 C 0 1 N N N N N N -13.469 -4.518 -14.958 2.257 -0.248 -0.047 C PHE 23
G85 O47 O47 O 0 1 N N N N N N -12.449 -4.416 -15.636 2.246 -1.168 0.744 O PHE 24
G85 C41 C41 C 0 1 N N N N N N -12.595 -4.525 -12.514 1.205 1.996 0.045 CB PHE 25
G85 C51 C51 C 0 1 Y N N N N N -13.155 -3.118 -12.401 -0.016 2.791 -0.341 CG PHE 26
G85 C53 C53 C 0 1 Y N N N N N -12.327 -1.989 -12.672 -1.048 2.956 0.564 CD1 PHE 27
G85 C55 C55 C 0 1 Y N N N N N -14.521 -2.894 -12.040 -0.101 3.360 -1.598 CD2 PHE 28
G85 C7 C7 C 0 1 Y N N N N N -12.851 -0.683 -12.574 -2.168 3.684 0.209 CE1 PHE 29
G85 C11 C11 C 0 1 Y N N N N N -15.064 -1.595 -11.966 -1.220 4.089 -1.952 CE2 PHE 30
G85 C9 C9 C 0 1 Y N N N N N -14.206 -0.508 -12.231 -2.255 4.249 -1.050 CZ PHE 31
G85 O86 O86 O 0 1 N N N N N N -11.410 -0.844 -16.557 7.039 3.610 0.770 O1 CEV 32
G85 C3 C3 C 0 1 N N N N N N -10.713 -0.514 -15.332 8.180 4.452 0.458 C3 CEV 33
G85 C5 C5 C 0 1 N N N N N N -10.329 0.956 -15.194 8.164 5.687 1.360 C5 CEV 34
G85 N49 N49 N 0 1 N N N N N N -14.654 -4.015 -15.404 3.398 0.082 -0.681 N49 CEV 35
G85 C57 C57 C 0 1 N N R N N N -14.762 -3.302 -16.692 4.652 -0.592 -0.334 C57 CEV 36
G85 C59 C59 C 0 1 N N N N N N -15.726 -4.054 -17.631 4.801 -1.858 -1.181 C59 CEV 37
G85 C61 C61 C 0 1 N N S N N N -15.297 -5.525 -17.820 6.040 -2.632 -0.727 C61 CEV 38
G85 C63 C63 C 0 1 N N N N N N -15.155 -1.842 -16.423 5.829 0.346 -0.606 C63 CEV 39
G85 C65 C65 C 0 1 N N N N N N -16.136 -6.367 -18.757 5.853 -3.152 0.682 C65 CEV 40
G85 O66 O66 O 0 1 N N N N N N -17.362 -6.304 -18.881 5.954 -2.483 1.688 O66 CEV 41
G85 N69 N69 N 0 1 N N N N N N -15.356 -7.145 -19.396 5.557 -4.463 0.655 N69 CEV 42
G85 C71 C71 C 0 1 N N N N N N -13.920 -6.880 -19.358 5.501 -4.969 -0.722 C71 CEV 43
G85 C73 C73 C 0 1 N N N N N N -13.881 -5.672 -18.416 6.224 -3.908 -1.581 C73 CEV 44
G85 C82 C82 C 0 1 N N N N N N -13.981 -1.041 -15.806 5.746 1.553 0.330 C82 CEV 45
G85 C84 C84 C 0 1 N N N N N N -12.877 -0.789 -16.829 6.906 2.477 0.062 C84 CEV 46
G85 O88 O88 O 0 1 N N N N N N -13.264 -0.563 -17.988 7.715 2.199 -0.791 O88 CEV 47
G85 H13 H13 H 0 1 N N N N N N -14.066 -13.373 -11.967 -7.126 1.018 2.018 H21 PHQ 48
G85 H13A H13A H 0 0 N N N N N N -12.558 -13.264 -12.938 -7.394 -0.722 1.757 H22 PHQ 49
G85 H2 H2 H 0 1 N N N N N N -16.017 -14.786 -12.899 -8.916 -1.500 0.031 H41 PHQ 50
G85 H1 H1 H 0 1 N N N N N N -16.621 -16.948 -13.966 -10.905 -0.989 -1.329 H51 PHQ 51
G85 H10 H10 H 0 1 N N N N N N -14.895 -18.114 -15.355 -11.579 1.350 -1.694 H61 PHQ 52
G85 H8 H8 H 0 1 N N N N N N -12.657 -17.100 -15.671 -10.270 3.180 -0.692 H71 PHQ 53
G85 H6 H6 H 0 1 N N N N N N -12.037 -14.939 -14.589 -8.285 2.669 0.672 H81 PHQ 54
G85 HN21 HN21 H 0 0 N N N N N N -14.017 -10.102 -15.290 -3.819 0.004 -0.689 HN RZ4 55
G85 H12 H12 H 0 1 N N N N N N -9.154 -9.393 -18.968 -3.146 -5.685 0.444 H1 RZ4 56
G85 H12A H12A H 0 0 N N N N N N -10.365 -8.270 -18.264 -3.333 -4.240 1.467 H1A RZ4 57
G85 H12B H12B H 0 0 N N N N N N -8.732 -8.405 -17.529 -4.186 -4.343 -0.092 H1B RZ4 58
G85 H45 H45 H 0 1 N N N N N N -9.289 -11.787 -16.011 -0.665 -5.400 0.493 H2 RZ4 59
G85 H45A H45A H 0 0 N N N N N N -8.426 -11.452 -17.550 0.064 -3.855 -0.007 H2A RZ4 60
G85 H45B H45B H 0 0 N N N N N N -8.148 -10.404 -16.118 -0.851 -3.955 1.516 H2B RZ4 61
G85 H43 H43 H 0 1 N N N N N N -11.455 -11.733 -17.151 -2.901 -4.202 -2.231 H3 RZ4 62
G85 H43A H43A H 0 0 N N N N N N -11.959 -10.303 -18.113 -1.134 -3.999 -2.195 H3A RZ4 63
G85 H43B H43B H 0 0 N N N N N N -10.668 -11.390 -18.728 -1.862 -5.544 -1.695 H3B RZ4 64
G85 H23 H23 H 0 1 N N N N N N -11.703 -8.896 -13.792 -2.482 0.011 1.908 HA RZ4 65
G85 H25 H25 H 0 1 N N N N N N -12.453 -9.255 -16.689 -1.419 -2.172 1.601 HB RZ4 66
G85 H25A H25A H 0 0 N N N N N N -11.584 -7.752 -16.228 -3.188 -2.376 1.565 HBA RZ4 67
G85 HN33 HN33 H 0 0 N N N N N N -11.749 -6.641 -13.360 0.096 -0.498 1.312 H PHE 68
G85 H37 H37 H 0 1 N N N N N N -14.393 -5.465 -13.258 0.738 0.446 -1.376 HA PHE 69
G85 H41 H41 H 0 1 N N N N N N -12.717 -5.052 -11.556 1.371 2.083 1.119 HB2 PHE 70
G85 H41A H41A H 0 0 N N N N N N -11.527 -4.481 -12.775 2.073 2.380 -0.489 HB3 PHE 71
G85 H53 H53 H 0 1 N N N N N N -11.295 -2.134 -12.953 -0.980 2.515 1.547 HD1 PHE 72
G85 H55 H55 H 0 1 N N N N N N -15.152 -3.742 -11.818 0.708 3.234 -2.303 HD2 PHE 73
G85 H7 H7 H 0 1 N N N N N N -12.220 0.174 -12.760 -2.977 3.809 0.914 HE1 PHE 74
G85 H11 H11 H 0 1 N N N N N N -16.103 -1.438 -11.715 -1.286 4.534 -2.934 HE2 PHE 75
G85 H9 H9 H 0 1 N N N N N N -14.602 0.495 -12.169 -3.130 4.818 -1.327 HZ PHE 76
G85 H3 H3 H 0 1 N N N N N N -9.792 -1.114 -15.289 9.101 3.893 0.623 H3 CEV 77
G85 H3A H3A H 0 1 N N N N N N -11.363 -0.779 -14.485 8.127 4.764 -0.585 H3A CEV 78
G85 H5 H5 H 0 1 N N N N N N -9.807 1.111 -14.238 7.244 6.247 1.195 H5 CEV 79
G85 H5A H5A H 0 1 N N N N N N -9.666 1.241 -16.024 8.217 5.376 2.404 H5A CEV 80
G85 H5B H5B H 0 1 N N N N N N -11.237 1.576 -15.220 9.021 6.319 1.126 H5B CEV 81
G85 HN49 HN49 H 0 0 N N N N N N -15.474 -4.132 -14.843 3.391 0.767 -1.368 HN49 CEV 82
G85 H57 H57 H 0 1 N N N N N N -13.771 -3.297 -17.169 4.638 -0.862 0.722 H57 CEV 83
G85 H59 H59 H 0 1 N N N N N N -16.738 -4.029 -17.200 3.917 -2.483 -1.059 H59 CEV 84
G85 H59A H59A H 0 0 N N N N N N -15.733 -3.555 -18.611 4.909 -1.582 -2.230 H59A CEV 85
G85 H61 H61 H 0 1 N N N N N N -15.298 -6.006 -16.831 6.926 -2.000 -0.785 H61 CEV 86
G85 H63 H63 H 0 1 N N N N N N -15.449 -1.371 -17.372 6.765 -0.185 -0.433 H63 CEV 87
G85 H63A H63A H 0 0 N N N N N N -16.005 -1.824 -15.726 5.791 0.686 -1.641 H63A CEV 88
G85 HN69 HN69 H 0 0 N N N N N N -15.719 -7.921 -19.913 5.401 -5.005 1.444 HN69 CEV 89
G85 H71 H71 H 0 1 N N N N N N -13.361 -7.733 -18.947 6.016 -5.927 -0.793 H71 CEV 90
G85 H71A H71A H 0 0 N N N N N N -13.527 -6.630 -20.355 4.465 -5.072 -1.044 H71A CEV 91
G85 H73 H73 H 0 1 N N N N N N -13.609 -4.764 -18.975 5.744 -3.799 -2.553 H73 CEV 92
G85 H73A H73A H 0 0 N N N N N N -13.148 -5.841 -17.613 7.280 -4.152 -1.694 H73A CEV 93
G85 H82 H82 H 0 1 N N N N N N -14.360 -0.074 -15.443 4.810 2.084 0.156 H82 CEV 94
G85 H82A H82A H 0 0 N N N N N N -13.564 -1.611 -14.963 5.784 1.213 1.365 H82A CEV 95
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G85 C1 C2 DOUB Y N 1
G85 C1 C10 SING Y N 2
G85 C2 C4 SING Y N 3
G85 C3 C5 SING N N 4
G85 C3 O86 SING N N 5
G85 C4 C6 DOUB Y N 6
G85 C4 C13 SING N N 7
G85 C6 C8 SING Y N 8
G85 C7 C9 DOUB Y N 9
G85 C7 C53 SING Y N 10
G85 C8 C10 DOUB Y N 11
G85 C9 C11 SING Y N 12
G85 C11 C55 DOUB Y N 13
G85 C12 C29 SING N N 14
G85 C13 O15 SING N N 15
G85 O15 C17 SING N N 16
G85 C17 O19 DOUB N N 17
G85 C17 N21 SING N N 18
G85 N21 C23 SING N N 19
G85 C23 C25 SING N N 20
G85 C23 C31 SING N N 21
G85 C25 O27 SING N N 22
G85 O27 C29 SING N N 23
G85 C29 C43 SING N N 24
G85 C29 C45 SING N N 25
G85 C31 N33 SING N N 26
G85 C31 O35 DOUB N N 27
G85 N33 C37 SING N N 28
G85 C37 C39 SING N N 29
G85 C37 C41 SING N N 30
G85 C39 O47 DOUB N N 31
G85 C39 N49 SING N N 32
G85 C41 C51 SING N N 33
G85 N49 C57 SING N N 34
G85 C51 C53 DOUB Y N 35
G85 C51 C55 SING Y N 36
G85 C57 C59 SING N N 37
G85 C57 C63 SING N N 38
G85 C59 C61 SING N N 39
G85 C61 C65 SING N N 40
G85 C61 C73 SING N N 41
G85 C63 C82 SING N N 42
G85 C65 O66 DOUB N N 43
G85 C65 N69 SING N N 44
G85 N69 C71 SING N N 45
G85 C71 C73 SING N N 46
G85 C82 C84 SING N N 47
G85 C84 O86 SING N N 48
G85 C84 O88 DOUB N N 49
G85 C1 H1 SING N N 50
G85 C2 H2 SING N N 51
G85 C3 H3 SING N N 52
G85 C3 H3A SING N N 53
G85 C5 H5 SING N N 54
G85 C5 H5A SING N N 55
G85 C5 H5B SING N N 56
G85 C6 H6 SING N N 57
G85 C7 H7 SING N N 58
G85 C8 H8 SING N N 59
G85 C9 H9 SING N N 60
G85 C10 H10 SING N N 61
G85 C11 H11 SING N N 62
G85 C12 H12 SING N N 63
G85 C12 H12A SING N N 64
G85 C12 H12B SING N N 65
G85 C13 H13 SING N N 66
G85 C13 H13A SING N N 67
G85 N21 HN21 SING N N 68
G85 C23 H23 SING N N 69
G85 C25 H25 SING N N 70
G85 C25 H25A SING N N 71
G85 N33 HN33 SING N N 72
G85 C37 H37 SING N N 73
G85 C41 H41 SING N N 74
G85 C41 H41A SING N N 75
G85 C43 H43 SING N N 76
G85 C43 H43A SING N N 77
G85 C43 H43B SING N N 78
G85 C45 H45 SING N N 79
G85 C45 H45A SING N N 80
G85 C45 H45B SING N N 81
G85 N49 HN49 SING N N 82
G85 C53 H53 SING N N 83
G85 C55 H55 SING N N 84
G85 C57 H57 SING N N 85
G85 C59 H59 SING N N 86
G85 C59 H59A SING N N 87
G85 C61 H61 SING N N 88
G85 C63 H63 SING N N 89
G85 C63 H63A SING N N 90
G85 N69 HN69 SING N N 91
G85 C71 H71 SING N N 92
G85 C71 H71A SING N N 93
G85 C73 H73 SING N N 94
G85 C73 H73A SING N N 95
G85 C82 H82 SING N N 96
G85 C82 H82A SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G85 InChI InChI 1.03 "InChI=1S/C35H48N4O8/c1-5-45-30(40)17-16-27(21-26-18-19-36-31(26)41)37-32(42)28(20-24-12-8-6-9-13-24)38-33(43)29(23-47-35(2,3)4)39-34(44)46-22-25-14-10-7-11-15-25/h6-15,26-29H,5,16-23H2,1-4H3,(H,36,41)(H,37,42)(H,38,43)(H,39,44)/t26-,27+,28-,29-/m0/s1"
G85 InChIKey InChI 1.03 JRBUWNJDFCUWEM-CRNKYVSFSA-N
G85 SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)NC(C(=O)NC(C(=O)NC(CC2C(=O)NCC2)CCC(=O)OCC)Cc3ccccc3)COC(C)(C)C"
G85 SMILES_CANONICAL CACTVS 3.370 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](COC(C)(C)C)NC(=O)OCc3ccccc3"
G85 SMILES CACTVS 3.370 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](COC(C)(C)C)NC(=O)OCc3ccccc3"
G85 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](COC(C)(C)C)NC(=O)OCc3ccccc3"
G85 SMILES "OpenEye OEToolkits" 1.7.6 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(COC(C)(C)C)NC(=O)OCc3ccccc3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G85 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-[(1R)-4-ethoxy-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}butyl]-L-phenylalaninamide"
G85 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "ethyl (4R)-4-[[(2S)-2-[[(2S)-3-[(2-methylpropan-2-yl)oxy]-2-(phenylmethoxycarbonylamino)propanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G85 "Create component" 2011-07-25 EBI
G85 "Modify subcomponent list" 2011-07-25 EBI
G85 "Modify linking type" 2012-04-04 EBI
G85 "Modify subcomponent list" 2012-04-05 RCSB
G85 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id G85
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C63
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#