data_G8C # _chem_comp.id G8C _chem_comp.name "1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H42 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-05 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G8C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CNY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G8C P P1 P 0 1 N N N 17.681 30.283 5.110 0.569 2.973 -0.154 P G8C 1 G8C N N1 N 0 1 N N N 20.060 26.103 6.462 3.987 2.218 2.513 N G8C 2 G8C O11 O1 O 0 1 N N N 19.122 31.012 5.195 0.007 1.617 -0.816 O11 G8C 3 G8C O12 O2 O 0 1 N N N 16.910 30.442 6.427 1.459 3.769 -1.233 O12 G8C 4 G8C O13 O3 O 0 1 N N N 17.978 28.701 5.055 1.475 2.609 1.126 O13 G8C 5 G8C O14 O4 O 0 1 N N N 16.925 30.469 3.812 -0.567 3.822 0.271 O14 G8C 6 G8C C11 C1 C 0 1 N N N 19.052 28.258 5.874 2.033 3.599 1.992 C11 G8C 7 G8C C12 C2 C 0 1 N N N 19.086 26.753 5.635 2.834 2.914 3.101 C12 G8C 8 G8C C1 C3 C 0 1 N N N 19.769 31.502 4.030 -0.915 1.609 -1.908 C1 G8C 9 G8C C2 C4 C 0 1 N N R 19.863 33.013 3.998 -1.240 0.163 -2.290 C2 G8C 10 G8C C3 C5 C 0 1 N N N 18.590 33.749 3.598 0.058 -0.591 -2.582 C3 G8C 11 G8C O31 O5 O 0 1 N N N 18.824 35.161 3.424 0.950 -0.480 -1.441 O31 G8C 12 G8C O32 O6 O 0 1 N N N 18.947 35.003 1.160 2.429 -1.700 -2.540 O32 G8C 13 G8C C31 C6 C 0 1 N N N 18.876 35.775 2.101 2.141 -1.092 -1.536 C31 G8C 14 G8C C32 C7 C 0 1 N N N 18.877 37.299 1.888 3.118 -1.020 -0.391 C32 G8C 15 G8C C33 C8 C 0 1 N N N 18.967 37.735 0.414 4.387 -1.795 -0.755 C33 G8C 16 G8C O21 O7 O 0 1 N N N 20.239 33.445 5.284 -1.939 -0.481 -1.193 O21 G8C 17 G8C O22 O8 O 0 1 N N N 21.760 34.790 4.373 -3.848 0.198 -2.074 O22 G8C 18 G8C C21 C9 C 0 1 N N N 21.557 33.978 5.261 -3.278 -0.396 -1.190 C21 G8C 19 G8C C22 C10 C 0 1 N N N 22.596 33.541 6.271 -4.072 -1.041 -0.083 C22 G8C 20 G8C C23 C11 C 0 1 N N N 23.068 34.775 7.041 -5.564 -0.797 -0.315 C23 G8C 21 G8C C24 C12 C 0 1 N N N 24.418 35.278 6.526 -6.369 -1.452 0.809 C24 G8C 22 G8C C25 C13 C 0 1 N N N 24.508 36.800 6.433 -7.862 -1.208 0.576 C25 G8C 23 G8C C26 C14 C 0 1 N N N 25.897 37.288 6.831 -8.667 -1.863 1.700 C26 G8C 24 G8C C27 C15 C 0 1 N N N 26.042 38.801 6.678 -10.159 -1.618 1.467 C27 G8C 25 G8C H1 H1 H 0 1 N N N 20.052 25.120 6.277 4.532 1.757 3.226 H1 G8C 26 G8C H2 H2 H 0 1 N N N 20.967 26.473 6.262 3.691 1.563 1.805 H2 G8C 27 G8C H4 H4 H 0 1 N N N 16.002 30.649 6.240 2.223 3.271 -1.556 H4 G8C 28 G8C H5 H5 H 0 1 N N N 19.999 28.726 5.567 2.691 4.253 1.419 H5 G8C 29 G8C H6 H6 H 0 1 N N N 18.858 28.483 6.933 1.230 4.188 2.435 H6 G8C 30 G8C H7 H7 H 0 1 N N N 18.093 26.335 5.859 2.199 2.194 3.617 H7 G8C 31 G8C H8 H8 H 0 1 N N N 19.334 26.566 4.580 3.186 3.663 3.811 H8 G8C 32 G8C H9 H9 H 0 1 N N N 19.204 31.167 3.148 -1.831 2.122 -1.615 H9 G8C 33 G8C H10 H10 H 0 1 N N N 20.787 31.086 3.993 -0.470 2.119 -2.763 H10 G8C 34 G8C H11 H11 H 0 1 N N N 20.649 33.287 3.279 -1.872 0.156 -3.178 H11 G8C 35 G8C H12 H12 H 0 1 N N N 17.834 33.607 4.384 -0.166 -1.642 -2.767 H12 G8C 36 G8C H13 H13 H 0 1 N N N 18.218 33.330 2.651 0.539 -0.162 -3.461 H13 G8C 37 G8C H14 H14 H 0 1 N N N 19.739 37.721 2.425 3.372 0.021 -0.195 H14 G8C 38 G8C H15 H15 H 0 1 N N N 17.947 37.706 2.311 2.667 -1.459 0.499 H15 G8C 39 G8C H16 H16 H 0 1 N N N 18.369 38.605 0.106 4.133 -2.836 -0.951 H16 G8C 40 G8C H17 H17 H 0 1 N N N 19.970 37.802 -0.033 4.837 -1.356 -1.645 H17 G8C 41 G8C H19 H19 H 0 1 N N N 22.154 32.814 6.968 -3.876 -2.113 -0.073 H19 G8C 42 G8C H20 H20 H 0 1 N N N 23.448 33.079 5.751 -3.778 -0.609 0.874 H20 G8C 43 G8C H21 H21 H 0 1 N N N 22.322 35.575 6.926 -5.760 0.275 -0.325 H21 G8C 44 G8C H22 H22 H 0 1 N N N 23.166 34.516 8.105 -5.858 -1.229 -1.272 H22 G8C 45 G8C H23 H23 H 0 1 N N N 24.586 34.858 5.523 -6.174 -2.524 0.819 H23 G8C 46 G8C H24 H24 H 0 1 N N N 25.205 34.924 7.209 -6.076 -1.020 1.765 H24 G8C 47 G8C H25 H25 H 0 1 N N N 24.300 37.111 5.399 -8.057 -0.135 0.566 H25 G8C 48 G8C H26 H26 H 0 1 N N N 23.762 37.247 7.107 -8.156 -1.640 -0.381 H26 G8C 49 G8C H27 H27 H 0 1 N N N 26.080 37.019 7.882 -8.472 -2.935 1.710 H27 G8C 50 G8C H28 H28 H 0 1 N N N 26.643 36.794 6.191 -8.373 -1.431 2.657 H28 G8C 51 G8C H29 H29 H 0 1 N N N 25.873 39.517 7.496 -10.355 -0.546 1.457 H29 G8C 52 G8C H30 H30 H 0 1 N N N 26.637 39.281 5.887 -10.453 -2.050 0.510 H30 G8C 53 G8C C4 C16 C 0 1 N N N ? ? ? -10.965 -2.273 2.591 C4 G8C 54 G8C C5 C17 C 0 1 N N N ? ? ? 5.379 -1.722 0.407 C5 G8C 55 G8C C6 C18 C 0 1 N N N ? ? ? 6.648 -2.496 0.044 C6 G8C 56 G8C C7 C19 C 0 1 N N N ? ? ? 7.640 -2.424 1.206 C7 G8C 57 G8C C8 C20 C 0 1 N N N ? ? ? 8.909 -3.198 0.843 C8 G8C 58 G8C C9 C21 C 0 1 N N N ? ? ? 9.901 -3.125 2.005 C9 G8C 59 G8C H3 H3 H 0 1 N N N ? ? ? -12.028 -2.099 2.425 H3 G8C 60 G8C H18 H18 H 0 1 N N N ? ? ? -10.769 -3.346 2.601 H18 G8C 61 G8C H31 H31 H 0 1 N N N ? ? ? -10.671 -1.842 3.548 H31 G8C 62 G8C H32 H32 H 0 1 N N N ? ? ? 5.633 -0.680 0.604 H32 G8C 63 G8C H33 H33 H 0 1 N N N ? ? ? 4.928 -2.160 1.298 H33 G8C 64 G8C H34 H34 H 0 1 N N N ? ? ? 6.394 -3.538 -0.153 H34 G8C 65 G8C H35 H35 H 0 1 N N N ? ? ? 7.098 -2.058 -0.846 H35 G8C 66 G8C H36 H36 H 0 1 N N N ? ? ? 7.894 -1.382 1.403 H36 G8C 67 G8C H37 H37 H 0 1 N N N ? ? ? 7.189 -2.862 2.097 H37 G8C 68 G8C H38 H38 H 0 1 N N N ? ? ? 8.655 -4.240 0.646 H38 G8C 69 G8C H39 H39 H 0 1 N N N ? ? ? 9.359 -2.760 -0.048 H39 G8C 70 G8C H40 H40 H 0 1 N N N ? ? ? 10.805 -3.677 1.746 H40 G8C 71 G8C H41 H41 H 0 1 N N N ? ? ? 10.155 -2.084 2.201 H41 G8C 72 G8C H42 H42 H 0 1 N N N ? ? ? 9.450 -3.563 2.895 H42 G8C 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G8C C33 C32 SING N N 1 G8C O32 C31 DOUB N N 2 G8C C32 C31 SING N N 3 G8C C31 O31 SING N N 4 G8C O31 C3 SING N N 5 G8C C3 C2 SING N N 6 G8C O14 P DOUB N N 7 G8C C2 C1 SING N N 8 G8C C2 O21 SING N N 9 G8C C1 O11 SING N N 10 G8C O22 C21 DOUB N N 11 G8C O13 P SING N N 12 G8C O13 C11 SING N N 13 G8C P O11 SING N N 14 G8C P O12 SING N N 15 G8C C21 O21 SING N N 16 G8C C21 C22 SING N N 17 G8C C12 C11 SING N N 18 G8C C12 N SING N N 19 G8C C22 C23 SING N N 20 G8C C25 C24 SING N N 21 G8C C25 C26 SING N N 22 G8C C24 C23 SING N N 23 G8C C27 C26 SING N N 24 G8C N H1 SING N N 25 G8C N H2 SING N N 26 G8C O12 H4 SING N N 27 G8C C11 H5 SING N N 28 G8C C11 H6 SING N N 29 G8C C12 H7 SING N N 30 G8C C12 H8 SING N N 31 G8C C1 H9 SING N N 32 G8C C1 H10 SING N N 33 G8C C2 H11 SING N N 34 G8C C3 H12 SING N N 35 G8C C3 H13 SING N N 36 G8C C32 H14 SING N N 37 G8C C32 H15 SING N N 38 G8C C33 H16 SING N N 39 G8C C33 H17 SING N N 40 G8C C22 H19 SING N N 41 G8C C22 H20 SING N N 42 G8C C23 H21 SING N N 43 G8C C23 H22 SING N N 44 G8C C24 H23 SING N N 45 G8C C24 H24 SING N N 46 G8C C25 H25 SING N N 47 G8C C25 H26 SING N N 48 G8C C26 H27 SING N N 49 G8C C26 H28 SING N N 50 G8C C27 H29 SING N N 51 G8C C27 H30 SING N N 52 G8C C27 C4 SING N N 53 G8C C33 C5 SING N N 54 G8C C5 C6 SING N N 55 G8C C6 C7 SING N N 56 G8C C7 C8 SING N N 57 G8C C8 C9 SING N N 58 G8C C4 H3 SING N N 59 G8C C4 H18 SING N N 60 G8C C4 H31 SING N N 61 G8C C5 H32 SING N N 62 G8C C5 H33 SING N N 63 G8C C6 H34 SING N N 64 G8C C6 H35 SING N N 65 G8C C7 H36 SING N N 66 G8C C7 H37 SING N N 67 G8C C8 H38 SING N N 68 G8C C8 H39 SING N N 69 G8C C9 H40 SING N N 70 G8C C9 H41 SING N N 71 G8C C9 H42 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G8C InChI InChI 1.03 "InChI=1S/C21H42NO8P/c1-3-5-7-9-11-13-20(23)27-17-19(18-29-31(25,26)28-16-15-22)30-21(24)14-12-10-8-6-4-2/h19H,3-18,22H2,1-2H3,(H,25,26)/t19-/m1/s1" G8C InChIKey InChI 1.03 UNACBKDVIYEXSL-LJQANCHMSA-N G8C SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC" G8C SMILES CACTVS 3.385 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC" G8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=O)CCCCCCC" G8C SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCC" # _pdbx_chem_comp_identifier.comp_id G8C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-octanoyloxy-propyl] octanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G8C "Create component" 2020-08-05 PDBJ G8C "Initial release" 2021-03-24 RCSB ##