data_G8G # _chem_comp.id G8G _chem_comp.name "(3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl](formyl)amino}-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-14 _chem_comp.pdbx_modified_date 2018-09-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.322 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G8G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DEL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G8G S01 S1 S 0 1 N N N 246.761 238.049 45.136 -1.465 2.524 -1.558 S01 G8G 1 G8G C02 C1 C 0 1 N N N 247.590 237.088 43.879 -1.050 0.989 -0.799 C02 G8G 2 G8G C03 C2 C 0 1 N N N 249.039 237.587 43.759 0.231 0.287 -1.170 C03 G8G 3 G8G C04 C3 C 0 1 N N N 249.248 238.990 44.274 1.368 0.798 -0.284 C04 G8G 4 G8G O05 O1 O 0 1 N N N 250.456 239.518 43.703 2.583 0.132 -0.637 O05 G8G 5 G8G P06 P1 P 0 1 N N N 250.914 241.018 44.107 3.987 0.425 0.094 P06 G8G 6 G8G O07 O2 O 0 1 N N N 250.523 241.330 45.610 5.104 -0.591 -0.464 O07 G8G 7 G8G P08 P2 P 0 1 N N N 251.295 240.999 46.942 6.527 -1.104 0.090 P08 G8G 8 G8G O09 O3 O 0 1 N N N 252.702 240.507 46.670 6.403 -1.446 1.525 O09 G8G 9 G8G O10 O4 O 0 1 N N N 250.527 239.961 47.727 6.985 -2.408 -0.735 O10 G8G 10 G8G O11 O5 O 0 1 N N N 251.368 242.337 47.774 7.624 0.060 -0.092 O11 G8G 11 G8G O12 O6 O 0 1 N N N 250.173 241.983 43.236 3.833 0.235 1.554 O12 G8G 12 G8G O13 O7 O 0 1 N N N 252.357 241.159 43.879 4.442 1.940 -0.205 O13 G8G 13 G8G C14 C4 C 0 1 N N N 247.020 236.067 43.126 -1.864 0.452 0.100 C14 G8G 14 G8G C15 C5 C 0 1 N N N 247.809 235.271 42.045 -1.463 -0.808 0.822 C15 G8G 15 G8G N16 N1 N 0 1 N N N 245.667 235.573 43.218 -3.097 1.055 0.376 N16 G8G 16 G8G C17 C6 C 0 1 N N N 244.890 235.612 44.501 -3.321 1.607 1.585 C17 G8G 17 G8G O18 O8 O 0 1 N N N 244.044 236.497 44.709 -2.425 1.665 2.401 O18 G8G 18 G8G C19 C7 C 0 1 N N N 245.018 234.958 42.085 -4.144 1.087 -0.648 C19 G8G 19 G8G C20 C8 C 0 1 Y N N 244.559 235.914 40.970 -5.052 -0.104 -0.476 C20 G8G 20 G8G C21 C9 C 0 1 Y N N 243.761 237.101 41.200 -6.110 -0.071 0.435 C21 G8G 21 G8G N22 N2 N 0 1 N N N 243.343 237.510 42.538 -6.346 1.061 1.199 N22 G8G 22 G8G N23 N3 N 0 1 Y N N 243.399 237.869 40.127 -6.888 -1.142 0.557 N23 G8G 23 G8G C24 C10 C 0 1 Y N N 243.759 237.527 38.907 -6.666 -2.220 -0.168 C24 G8G 24 G8G C25 C11 C 0 1 N N N 243.341 238.389 37.735 -7.570 -3.414 -0.001 C25 G8G 25 G8G N26 N4 N 0 1 Y N N 244.490 236.431 38.650 -5.677 -2.282 -1.036 N26 G8G 26 G8G C27 C12 C 0 1 Y N N 244.904 235.605 39.651 -4.862 -1.252 -1.218 C27 G8G 27 G8G H1 H1 H 0 1 N N N 247.705 238.852 45.529 -2.654 2.823 -1.006 H1 G8G 28 G8G H2 H2 H 0 1 N N N 249.688 236.908 44.332 0.112 -0.787 -1.025 H2 G8G 29 G8G H3 H3 H 0 1 N N N 249.327 237.561 42.698 0.465 0.488 -2.215 H3 G8G 30 G8G H4 H4 H 0 1 N N N 249.334 238.972 45.370 1.488 1.872 -0.430 H4 G8G 31 G8G H5 H5 H 0 1 N N N 248.395 239.621 43.984 1.134 0.597 0.761 H5 G8G 32 G8G H6 H6 H 0 1 N N N 251.085 239.210 47.890 7.836 -2.772 -0.454 H6 G8G 33 G8G H7 H7 H 0 1 N N N 252.277 242.561 47.935 7.758 0.335 -1.009 H7 G8G 34 G8G H8 H8 H 0 1 N N N 252.511 241.833 43.227 4.563 2.136 -1.144 H8 G8G 35 G8G H9 H9 H 0 1 N N N 248.838 235.656 41.984 -1.734 -1.675 0.220 H9 G8G 36 G8G H10 H10 H 0 1 N N N 247.832 234.206 42.318 -0.386 -0.804 0.989 H10 G8G 37 G8G H11 H11 H 0 1 N N N 247.315 235.389 41.069 -1.979 -0.857 1.781 H11 G8G 38 G8G H12 H12 H 0 1 N N N 245.069 234.859 45.255 -4.298 1.998 1.828 H12 G8G 39 G8G H13 H13 H 0 1 N N N 244.131 234.422 42.455 -4.724 2.004 -0.547 H13 G8G 40 G8G H14 H14 H 0 1 N N N 245.723 234.239 41.643 -3.686 1.054 -1.637 H14 G8G 41 G8G H15 H15 H 0 1 N N N 242.812 238.355 42.478 -5.846 1.875 1.028 H15 G8G 42 G8G H16 H16 H 0 1 N N N 242.780 236.791 42.945 -7.010 1.039 1.906 H16 G8G 43 G8G H17 H17 H 0 1 N N N 243.727 237.952 36.802 -8.408 -3.335 -0.694 H17 G8G 44 G8G H18 H18 H 0 1 N N N 242.243 238.439 37.690 -7.010 -4.325 -0.210 H18 G8G 45 G8G H19 H19 H 0 1 N N N 243.749 239.403 37.862 -7.946 -3.444 1.022 H19 G8G 46 G8G H20 H20 H 0 1 N N N 245.490 234.725 39.429 -4.054 -1.314 -1.933 H20 G8G 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G8G C25 C24 SING N N 1 G8G N26 C24 DOUB Y N 2 G8G N26 C27 SING Y N 3 G8G C24 N23 SING Y N 4 G8G C27 C20 DOUB Y N 5 G8G N23 C21 DOUB Y N 6 G8G C20 C21 SING Y N 7 G8G C20 C19 SING N N 8 G8G C21 N22 SING N N 9 G8G C15 C14 SING N N 10 G8G C19 N16 SING N N 11 G8G C14 N16 SING N N 12 G8G C14 C02 DOUB N Z 13 G8G N16 C17 SING N N 14 G8G O12 P06 DOUB N N 15 G8G O05 P06 SING N N 16 G8G O05 C04 SING N N 17 G8G C03 C02 SING N N 18 G8G C03 C04 SING N N 19 G8G O13 P06 SING N N 20 G8G C02 S01 SING N N 21 G8G P06 O07 SING N N 22 G8G C17 O18 DOUB N N 23 G8G O07 P08 SING N N 24 G8G O09 P08 DOUB N N 25 G8G P08 O10 SING N N 26 G8G P08 O11 SING N N 27 G8G S01 H1 SING N N 28 G8G C03 H2 SING N N 29 G8G C03 H3 SING N N 30 G8G C04 H4 SING N N 31 G8G C04 H5 SING N N 32 G8G O10 H6 SING N N 33 G8G O11 H7 SING N N 34 G8G O13 H8 SING N N 35 G8G C15 H9 SING N N 36 G8G C15 H10 SING N N 37 G8G C15 H11 SING N N 38 G8G C17 H12 SING N N 39 G8G C19 H13 SING N N 40 G8G C19 H14 SING N N 41 G8G N22 H15 SING N N 42 G8G N22 H16 SING N N 43 G8G C25 H17 SING N N 44 G8G C25 H18 SING N N 45 G8G C25 H19 SING N N 46 G8G C27 H20 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G8G SMILES ACDLabs 12.01 "S/C(CCOP(OP(O)(O)=O)(=O)O)=C(\N(C=O)Cc1c(N)nc(C)nc1)C" G8G InChI InChI 1.03 "InChI=1S/C12H20N4O8P2S/c1-8(11(27)3-4-23-26(21,22)24-25(18,19)20)16(7-17)6-10-5-14-9(2)15-12(10)13/h5,7,27H,3-4,6H2,1-2H3,(H,21,22)(H2,13,14,15)(H2,18,19,20)/b11-8-" G8G InChIKey InChI 1.03 ODQNREFTECDKDB-FLIBITNWSA-N G8G SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CN(C=O)C(/C)=C(\S)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1" G8G SMILES CACTVS 3.385 "Cc1ncc(CN(C=O)C(C)=C(S)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1" G8G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN(C=O)/C(=C(/CCOP(=O)(O)OP(=O)(O)O)\S)/C" G8G SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN(C=O)C(=C(CCOP(=O)(O)OP(=O)(O)O)S)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G8G "SYSTEMATIC NAME" ACDLabs 12.01 "(3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl](formyl)amino}-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate" G8G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(~{Z})-4-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl-methanoyl-amino]-3-sulfanyl-pent-3-enyl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G8G "Create component" 2018-05-14 RCSB G8G "Initial release" 2018-09-26 RCSB #