data_G8X # _chem_comp.id G8X _chem_comp.name "(2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O3" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-06 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G8X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CNQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G8X O2 O2 O 0 1 N N N N N N 0.660 12.797 62.539 -0.146 1.819 -0.410 O2 G8X 1 G8X OXT O O 0 1 N N N Y N Y -2.226 10.995 63.710 -2.394 0.204 0.609 O1 G8X 2 G8X N N N 0 1 N N N Y Y N -0.942 13.108 65.012 0.879 -1.400 0.085 N G8X 3 G8X CB CB C 0 1 N N R N N N -0.222 13.859 62.884 0.687 0.999 0.412 C3 G8X 4 G8X CG CG C 0 1 N N N N N N 0.420 14.768 63.915 2.001 0.657 -0.329 C4 G8X 5 G8X CD CD C 0 1 N N N N N N -0.066 14.268 65.270 2.247 -0.821 0.066 C5 G8X 6 G8X CA CA C 0 1 N N S Y N N -1.372 13.196 63.602 0.009 -0.359 0.674 C2 G8X 7 G8X C C C 0 1 N N N Y N Y -1.612 11.836 63.020 -1.347 -0.391 0.016 C1 G8X 8 G8X O O1 O 0 1 N N N Y N Y -1.256 11.617 61.838 -1.490 -0.951 -1.045 OXT G8X 9 G8X H1 H1 H 0 1 N N N N N N 0.160 12.072 62.183 0.230 2.688 -0.608 H1 G8X 10 G8X HXT HXT H 0 1 N N N Y N Y -2.364 10.206 63.200 -3.244 0.157 0.148 H2 G8X 11 G8X H H H 0 1 N N N Y Y N -1.738 13.138 65.616 0.852 -2.246 0.633 H3 G8X 12 G8X HB2 HB2 H 0 1 N N N N N N -0.568 14.428 62.009 0.902 1.502 1.354 H5 G8X 13 G8X HG2 HG2 H 0 1 N N N N N N 1.516 14.703 63.853 1.872 0.752 -1.407 H6 G8X 14 G8X HG3 HG3 H 0 1 N N N N N N 0.105 15.810 63.756 2.816 1.291 0.021 H7 G8X 15 G8X HD2 HD2 H 0 1 N N N N N N 0.790 13.964 65.890 2.705 -0.884 1.053 H8 G8X 16 G8X HD3 HD3 H 0 1 N N N N N N -0.629 15.060 65.785 2.866 -1.320 -0.679 H9 G8X 17 G8X HA HA H 0 1 N N N Y N N -2.278 13.813 63.513 -0.092 -0.522 1.747 H10 G8X 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G8X O C DOUB N N 1 G8X O2 CB SING N N 2 G8X CB CA SING N N 3 G8X CB CG SING N N 4 G8X C CA SING N N 5 G8X C OXT SING N N 6 G8X CA N SING N N 7 G8X CG CD SING N N 8 G8X N CD SING N N 9 G8X O2 H1 SING N N 10 G8X OXT HXT SING N N 11 G8X N H SING N N 12 G8X CB HB2 SING N N 13 G8X CG HG2 SING N N 14 G8X CG HG3 SING N N 15 G8X CD HD2 SING N N 16 G8X CD HD3 SING N N 17 G8X CA HA SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G8X InChI InChI 1.03 "InChI=1S/C5H9NO3/c7-3-1-2-6-4(3)5(8)9/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1" G8X InChIKey InChI 1.03 BJBUEDPLEOHJGE-DMTCNVIQSA-N G8X SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CCN[C@@H]1C(O)=O" G8X SMILES CACTVS 3.385 "O[CH]1CCN[CH]1C(O)=O" G8X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CN[C@@H]([C@@H]1O)C(=O)O" G8X SMILES "OpenEye OEToolkits" 2.0.7 "C1CNC(C1O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id G8X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G8X "Create component" 2020-08-06 PDBJ G8X "Initial release" 2021-06-16 RCSB G8X "Modify backbone" 2023-11-03 PDBE #