data_G9S
#
_chem_comp.id G9S
_chem_comp.name "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexadecanethioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H53 N2 O8 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-05-16
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 596.757
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G9S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DFL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G9S C1 C1 C 0 1 N N N N N N -50.371 33.564 26.342 -1.819 1.799 -1.010 C1 G9S 1
G9S C2 C2 C 0 1 N N N N N N -50.866 36.031 26.195 -4.149 1.741 -0.300 C2 G9S 2
G9S C3 C3 C 0 1 N N N N N N -51.806 37.194 26.471 -5.216 1.401 0.708 C3 G9S 3
G9S C4 C4 C 0 1 N N N N N N -53.174 37.107 25.819 -6.585 1.809 0.158 C4 G9S 4
G9S C5 C5 C 0 1 N N N N N N -54.213 35.319 24.195 -8.915 1.750 0.868 C5 G9S 5
G9S C6 C6 C 0 1 N N N N N N -53.348 36.347 21.900 -10.094 -0.205 1.835 C6 G9S 6
G9S C7 C7 C 0 1 N N N N N N -53.874 37.279 20.835 -10.301 -0.706 0.404 C7 G9S 7
G9S C8 C8 C 0 1 N N N N N N -52.046 36.887 22.429 -11.280 -0.634 2.702 C8 G9S 8
G9S C10 C9 C 0 1 N N N N N N -50.279 31.127 28.853 2.220 1.255 -0.829 C10 G9S 9
G9S C11 C10 C 0 1 N N N N N N -50.722 30.396 30.089 3.583 1.387 -1.458 C11 G9S 10
G9S C12 C11 C 0 1 N N N N N N -49.615 29.713 30.858 4.641 0.830 -0.504 C12 G9S 11
G9S C13 C12 C 0 1 N N N N N N -48.208 29.972 30.349 6.025 0.964 -1.143 C13 G9S 12
G9S C14 C13 C 0 1 N N N N N N -47.442 28.751 29.821 7.083 0.407 -0.189 C14 G9S 13
G9S C15 C14 C 0 1 N N N N N N -46.421 28.119 30.754 8.467 0.541 -0.827 C15 G9S 14
G9S C16 C15 C 0 1 N N N N N N -45.092 28.817 30.923 9.525 -0.017 0.127 C16 G9S 15
G9S N2 N1 N 0 1 N N N N N N -51.243 34.683 26.593 -2.856 1.469 -0.030 N2 G9S 16
G9S C19 C16 C 0 1 N N N N N N -49.293 33.313 27.366 -0.450 1.391 -0.461 C19 G9S 17
G9S C20 C17 C 0 1 N N N N N N -53.133 35.006 21.267 -8.805 -0.801 2.403 C20 G9S 18
G9S C21 C18 C 0 1 N N N N N N -43.878 27.973 31.298 10.909 0.117 -0.512 C21 G9S 19
G9S C22 C19 C 0 1 N N N N N N -42.763 28.752 31.990 11.967 -0.440 0.443 C22 G9S 20
G9S C23 C20 C 0 1 N N N N N N -41.721 27.992 32.757 13.351 -0.306 -0.196 C23 G9S 21
G9S C24 C21 C 0 1 N N N N N N -40.293 28.170 32.285 14.409 -0.863 0.758 C24 G9S 22
G9S C25 C22 C 0 1 N N N N N N -39.144 27.637 33.132 15.793 -0.729 0.120 C25 G9S 23
G9S C26 C23 C 0 1 N N N N N N -37.759 28.258 32.926 16.851 -1.286 1.074 C26 G9S 24
G9S C27 C24 C 0 1 N N N N N N -37.403 29.460 33.781 18.235 -1.153 0.435 C27 G9S 25
G9S C28 C25 C 0 1 N N N N N N -35.966 29.887 33.749 19.293 -1.710 1.390 C28 G9S 26
G9S C29 C26 C 0 1 N N N N N N -35.195 29.832 35.030 20.677 -1.576 0.751 C29 G9S 27
G9S C30 C27 C 0 1 N N S N N N -54.442 36.273 23.014 -9.992 1.322 1.831 C30 G9S 28
G9S N3 N2 N 0 1 N N N N N N -53.635 35.737 25.481 -7.623 1.480 1.138 N3 G9S 29
G9S O2 O1 O 0 1 N N N N N N -49.799 36.229 25.624 -4.452 2.257 -1.355 O2 G9S 30
G9S O3 O2 O 0 1 N N N N N N -50.364 30.624 27.739 2.106 0.763 0.274 O3 G9S 31
G9S O4 O3 O 0 1 N N N N N N -54.541 34.143 24.069 -9.211 2.339 -0.150 O4 G9S 32
G9S O5 O4 O 0 1 N N N N N N -54.808 37.519 23.486 -11.243 1.883 1.427 O5 G9S 33
G9S O6 O5 O 0 1 N N N N N N -55.256 37.294 20.662 -10.397 -2.131 0.408 O6 G9S 34
G9S O8 O6 O 0 1 N N N N N N -57.320 37.976 19.375 -10.808 -4.549 -0.540 O8 G9S 35
G9S O9 O7 O 0 1 N N N N N N -55.783 36.245 18.403 -11.823 -2.516 -1.639 O9 G9S 36
G9S P1 P1 P 0 1 N N N N N N -55.887 37.505 19.238 -10.617 -2.999 -0.931 P1 G9S 37
G9S S1 S1 S 0 1 N N N N N N -49.881 32.851 28.989 0.832 1.799 -1.672 S1 G9S 38
G9S O1 O8 O 0 1 N Y N N N N -55.090 38.663 18.559 -9.333 -2.841 -1.889 O1 G9S 39
G9S H1 H1 H 0 1 N N N N N N -50.995 32.660 26.284 -2.012 1.262 -1.939 H1 G9S 40
G9S H2 H2 H 0 1 N N N N N N -49.879 33.733 25.373 -1.828 2.872 -1.202 H2 G9S 41
G9S H3 H3 H 0 1 N N N N N N -51.319 38.113 26.113 -5.207 0.329 0.900 H3 G9S 42
G9S H4 H4 H 0 1 N N N N N N -51.954 37.257 27.559 -5.023 1.939 1.636 H4 G9S 43
G9S H5 H5 H 0 1 N N N N N N -53.144 37.694 24.889 -6.594 2.882 -0.034 H5 G9S 44
G9S H6 H6 H 0 1 N N N N N N -53.907 37.551 26.509 -6.778 1.272 -0.770 H6 G9S 45
G9S H7 H7 H 0 1 N N N N N N -53.419 36.986 19.877 -11.219 -0.280 -0.001 H7 G9S 46
G9S H8 H8 H 0 1 N N N N N N -53.557 38.300 21.095 -9.456 -0.400 -0.213 H8 G9S 47
G9S H9 H9 H 0 1 N N N N N N -51.657 36.212 23.206 -12.208 -0.289 2.245 H9 G9S 48
G9S H10 H10 H 0 1 N N N N N N -51.318 36.958 21.607 -11.297 -1.721 2.782 H10 G9S 49
G9S H11 H11 H 0 1 N N N N N N -52.211 37.885 22.860 -11.181 -0.197 3.695 H11 G9S 50
G9S H12 H12 H 0 1 N N N N N N -51.206 31.121 30.759 3.607 0.828 -2.394 H12 G9S 51
G9S H13 H13 H 0 1 N N N N N N -51.452 29.630 29.789 3.791 2.438 -1.658 H13 G9S 52
G9S H14 H14 H 0 1 N N N N N N -49.666 30.056 31.902 4.617 1.389 0.431 H14 G9S 53
G9S H15 H15 H 0 1 N N N N N N -49.795 28.628 30.819 4.433 -0.221 -0.305 H15 G9S 54
G9S H16 H16 H 0 1 N N N N N N -47.625 30.401 31.177 6.049 0.405 -2.078 H16 G9S 55
G9S H17 H17 H 0 1 N N N N N N -48.277 30.704 29.531 6.233 2.015 -1.342 H17 G9S 56
G9S H18 H18 H 0 1 N N N N N N -48.183 27.978 29.568 7.059 0.965 0.747 H18 G9S 57
G9S H19 H19 H 0 1 N N N N N N -46.911 29.062 28.909 6.875 -0.645 0.011 H19 G9S 58
G9S H20 H20 H 0 1 N N N N N N -46.884 28.051 31.749 8.491 -0.018 -1.763 H20 G9S 59
G9S H21 H21 H 0 1 N N N N N N -46.214 27.107 30.376 8.675 1.592 -1.026 H21 G9S 60
G9S H22 H22 H 0 1 N N N N N N -44.861 29.315 29.970 9.501 0.542 1.063 H22 G9S 61
G9S H23 H23 H 0 1 N N N N N N -45.219 29.574 31.711 9.317 -1.068 0.326 H23 G9S 62
G9S H24 H24 H 0 1 N N N N N N -52.121 34.531 27.048 -2.614 1.056 0.813 H24 G9S 63
G9S H25 H25 H 0 1 N N N N N N -48.651 32.502 26.993 -0.257 1.929 0.468 H25 G9S 64
G9S H26 H26 H 0 1 N N N N N N -48.699 34.233 27.468 -0.441 0.319 -0.269 H26 G9S 65
G9S H27 H27 H 0 1 N N N N N N -52.749 34.302 22.020 -8.920 -1.880 2.511 H27 G9S 66
G9S H28 H28 H 0 1 N N N N N N -54.087 34.632 20.869 -7.978 -0.590 1.726 H28 G9S 67
G9S H29 H29 H 0 1 N N N N N N -52.405 35.100 20.448 -8.599 -0.359 3.378 H29 G9S 68
G9S H30 H30 H 0 1 N N N N N N -44.211 27.172 31.975 10.933 -0.441 -1.447 H30 G9S 69
G9S H31 H31 H 0 1 N N N N N N -43.469 27.529 30.378 11.117 1.169 -0.711 H31 G9S 70
G9S H32 H32 H 0 1 N N N N N N -42.238 29.326 31.212 11.943 0.119 1.378 H32 G9S 71
G9S H33 H33 H 0 1 N N N N N N -43.243 29.446 32.696 11.759 -1.491 0.642 H33 G9S 72
G9S H34 H34 H 0 1 N N N N N N -41.772 28.316 33.807 13.375 -0.865 -1.132 H34 G9S 73
G9S H35 H35 H 0 1 N N N N N N -40.219 27.680 31.303 14.385 -0.304 1.694 H35 G9S 74
G9S H36 H36 H 0 1 N N N N N N -39.417 27.786 34.187 15.817 -1.288 -0.816 H36 G9S 75
G9S H37 H37 H 0 1 N N N N N N -39.055 26.560 32.925 16.001 0.322 -0.080 H37 G9S 76
G9S H38 H38 H 0 1 N N N N N N -37.012 27.476 33.128 16.827 -0.728 2.010 H38 G9S 77
G9S H39 H39 H 0 1 N N N N N N -38.014 30.309 33.440 18.259 -1.711 -0.500 H39 G9S 78
G9S H40 H40 H 0 1 N N N N N N -35.447 29.241 33.026 19.269 -1.151 2.325 H40 G9S 79
G9S H41 H41 H 0 1 N N N N N N -35.941 30.928 33.395 19.086 -2.761 1.589 H41 G9S 80
G9S H42 H42 H 0 1 N N N N N N -34.164 30.172 34.853 20.885 -0.525 0.552 H42 G9S 81
G9S H43 H43 H 0 1 N N N N N N -35.674 30.485 35.774 21.431 -1.973 1.431 H43 G9S 82
G9S H44 H44 H 0 1 N N N N N N -35.181 28.798 35.405 20.701 -2.135 -0.185 H44 G9S 83
G9S H45 H45 H 0 1 N N N N N N -55.326 35.868 22.499 -9.743 1.672 2.833 H45 G9S 84
G9S H46 H46 H 0 1 N N N N N N -53.545 35.037 26.190 -7.380 1.066 1.981 H46 G9S 85
G9S H47 H47 H 0 1 N N N N N N -55.472 37.421 24.158 -11.527 1.613 0.543 H47 G9S 86
G9S H48 H48 H 0 1 N Y N N N N -57.895 37.384 18.904 -10.946 -5.132 -1.299 H48 G9S 87
G9S H49 H49 H 0 1 N N N N N N -54.696 38.348 17.754 -8.505 -3.139 -1.489 H49 G9S 88
G9S H50 H50 H 0 1 N N N N N N -41.967 26.922 32.691 13.559 0.745 -0.395 H50 G9S 89
G9S H51 H51 H 0 1 N N N N N N -40.128 29.251 32.169 14.201 -1.914 0.957 H51 G9S 90
G9S H52 H52 H 0 1 N N N N N N -37.689 28.569 31.873 16.643 -2.338 1.273 H52 G9S 91
G9S H53 H53 H 0 1 N N N N N N -37.659 29.219 34.823 18.443 -0.101 0.236 H53 G9S 92
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G9S O9 P1 DOUB N N 1
G9S P1 O8 SING N N 2
G9S P1 O6 SING N N 3
G9S O6 C7 SING N N 4
G9S C7 C6 SING N N 5
G9S C20 C6 SING N N 6
G9S C6 C8 SING N N 7
G9S C6 C30 SING N N 8
G9S C30 O5 SING N N 9
G9S C30 C5 SING N N 10
G9S O4 C5 DOUB N N 11
G9S C5 N3 SING N N 12
G9S N3 C4 SING N N 13
G9S O2 C2 DOUB N N 14
G9S C4 C3 SING N N 15
G9S C2 C3 SING N N 16
G9S C2 N2 SING N N 17
G9S C1 N2 SING N N 18
G9S C1 C19 SING N N 19
G9S C19 S1 SING N N 20
G9S O3 C10 DOUB N N 21
G9S C10 S1 SING N N 22
G9S C10 C11 SING N N 23
G9S C14 C13 SING N N 24
G9S C14 C15 SING N N 25
G9S C11 C12 SING N N 26
G9S C13 C12 SING N N 27
G9S C15 C16 SING N N 28
G9S C16 C21 SING N N 29
G9S C21 C22 SING N N 30
G9S C22 C23 SING N N 31
G9S C24 C23 SING N N 32
G9S C24 C25 SING N N 33
G9S C26 C25 SING N N 34
G9S C26 C27 SING N N 35
G9S C28 C27 SING N N 36
G9S C28 C29 SING N N 37
G9S P1 O1 SING N N 38
G9S C1 H1 SING N N 39
G9S C1 H2 SING N N 40
G9S C3 H3 SING N N 41
G9S C3 H4 SING N N 42
G9S C4 H5 SING N N 43
G9S C4 H6 SING N N 44
G9S C7 H7 SING N N 45
G9S C7 H8 SING N N 46
G9S C8 H9 SING N N 47
G9S C8 H10 SING N N 48
G9S C8 H11 SING N N 49
G9S C11 H12 SING N N 50
G9S C11 H13 SING N N 51
G9S C12 H14 SING N N 52
G9S C12 H15 SING N N 53
G9S C13 H16 SING N N 54
G9S C13 H17 SING N N 55
G9S C14 H18 SING N N 56
G9S C14 H19 SING N N 57
G9S C15 H20 SING N N 58
G9S C15 H21 SING N N 59
G9S C16 H22 SING N N 60
G9S C16 H23 SING N N 61
G9S N2 H24 SING N N 62
G9S C19 H25 SING N N 63
G9S C19 H26 SING N N 64
G9S C20 H27 SING N N 65
G9S C20 H28 SING N N 66
G9S C20 H29 SING N N 67
G9S C21 H30 SING N N 68
G9S C21 H31 SING N N 69
G9S C22 H32 SING N N 70
G9S C22 H33 SING N N 71
G9S C23 H34 SING N N 72
G9S C24 H35 SING N N 73
G9S C25 H36 SING N N 74
G9S C25 H37 SING N N 75
G9S C26 H38 SING N N 76
G9S C27 H39 SING N N 77
G9S C28 H40 SING N N 78
G9S C28 H41 SING N N 79
G9S C29 H42 SING N N 80
G9S C29 H43 SING N N 81
G9S C29 H44 SING N N 82
G9S C30 H45 SING N N 83
G9S N3 H46 SING N N 84
G9S O5 H47 SING N N 85
G9S O8 H48 SING N N 86
G9S O1 H49 SING N N 87
G9S C23 H50 SING N N 88
G9S C24 H51 SING N N 89
G9S C26 H52 SING N N 90
G9S C27 H53 SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G9S SMILES ACDLabs 12.01 "C(NC(CCNC(C(C(C)(COP(O)(=O)O)C)O)=O)=O)CSC(CCCCCCCCCCCCCCC)=O"
G9S InChI InChI 1.03 "InChI=1S/C27H53N2O8PS/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-24(31)39-21-20-28-23(30)18-19-29-26(33)25(32)27(2,3)22-37-38(34,35)36/h25,32H,4-22H2,1-3H3,(H,28,30)(H,29,33)(H2,34,35,36)/t25-/m1/s1"
G9S InChIKey InChI 1.03 JSWBEHRITPIXLC-RUZDIDTESA-N
G9S SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O"
G9S SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
G9S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O"
G9S SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G9S "SYSTEMATIC NAME" ACDLabs 12.01 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexadecanethioate"
G9S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] hexadecanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G9S "Create component" 2018-05-16 RCSB
G9S "Initial release" 2019-04-03 RCSB
G9S "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id G9S
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#