data_GAF
# 
_chem_comp.id                                    GAF 
_chem_comp.name                                  2-deoxy-2-fluoro-alpha-D-galactopyranose 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H11 F O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-DEOXY-2-FLUORO-GALACTOSE; 2-deoxy-2-fluoro-alpha-D-galactose; 2-deoxy-2-fluoro-D-galactose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-02-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        182.147 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GAF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 GAF 2-DEOXY-2-FLUORO-GALACTOSE         PDB ? 
2 GAF 2-deoxy-2-fluoro-alpha-D-galactose PDB ? 
3 GAF 2-deoxy-2-fluoro-D-galactose       PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GAF C1  C1   C 0 1 N N S N N N 119.774 38.094 65.006 1.414  -0.495 -0.365 C1  GAF 1  
GAF C2  C2   C 0 1 N N R N N N 118.893 37.421 63.941 0.373  -0.501 -1.487 C2  GAF 2  
GAF F2  F2   F 0 1 N N N N N N 118.442 36.172 64.360 1.004  -0.255 -2.712 F2  GAF 3  
GAF C3  C3   C 0 1 N N S N N N 119.712 37.262 62.681 -0.664 0.592  -1.213 C3  GAF 4  
GAF O3  O3   O 0 1 N N N N N N 118.875 36.675 61.705 -1.721 0.502  -2.170 O3  GAF 5  
GAF C4  C4   C 0 1 N N R N N N 120.258 38.615 62.202 -1.225 0.390  0.198  C4  GAF 6  
GAF O4  O4   O 0 1 N N N N N N 119.131 39.413 61.888 -1.966 -0.830 0.248  O4  GAF 7  
GAF C5  C5   C 0 1 N N R N N N 121.085 39.248 63.341 -0.064 0.331  1.193  C5  GAF 8  
GAF O5  O5   O 0 1 N N N N N N 120.272 39.336 64.523 0.780  -0.774 0.881  O5  GAF 9  
GAF C6  C6   C 0 1 N N N N N N 121.643 40.654 63.045 -0.616 0.166  2.610  C6  GAF 10 
GAF O6  O6   O 0 1 N N N N N N 120.636 41.605 63.365 0.466  0.113  3.540  O6  GAF 11 
GAF O1  O1   O 0 1 N Y N N N N 120.891 37.228 65.258 2.037  0.789  -0.305 O1  GAF 12 
GAF H1  H1C1 H 0 1 N N N N N N 119.237 38.210 65.976 2.168  -1.255 -0.566 H1  GAF 13 
GAF H2  H2   H 0 1 N N N N N N 118.015 38.074 63.727 -0.120 -1.472 -1.521 H2  GAF 14 
GAF H3  H3   H 0 1 N N N N N N 120.567 36.577 62.887 -0.190 1.571  -1.283 H3  GAF 15 
GAF HO3 HA   H 0 1 N Y N N N N 119.390 36.575 60.913 -1.319 0.621  -3.042 HO3 GAF 16 
GAF H4  H4   H 0 1 N N N N N N 120.894 38.474 61.297 -1.880 1.224  0.453  H4  GAF 17 
GAF HO4 HB   H 0 1 N Y N N N N 119.469 40.250 61.592 -2.681 -0.749 -0.396 HO4 GAF 18 
GAF H5  H5   H 0 1 N N N N N N 121.945 38.573 63.561 0.510  1.255  1.134  H5  GAF 19 
GAF H61 H6C1 H 0 1 N N N N N N 122.017 40.758 62.000 -1.192 -0.757 2.670  H61 GAF 20 
GAF H62 H6C2 H 0 1 N N N N N N 122.606 40.854 63.569 -1.261 1.011  2.850  H62 GAF 21 
GAF HO6 H6   H 0 1 N N N N N N 120.980 42.472 63.183 0.076  0.009  4.419  HO6 GAF 22 
GAF HO1 H1   H 0 1 N Y N N N N 121.435 37.643 65.916 2.688  0.750  0.409  HO1 GAF 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GAF C1 C2  SING N N 1  
GAF C1 O5  SING N N 2  
GAF C1 O1  SING N N 3  
GAF C1 H1  SING N N 4  
GAF C2 F2  SING N N 5  
GAF C2 C3  SING N N 6  
GAF C2 H2  SING N N 7  
GAF C3 O3  SING N N 8  
GAF C3 C4  SING N N 9  
GAF C3 H3  SING N N 10 
GAF O3 HO3 SING N N 11 
GAF C4 O4  SING N N 12 
GAF C4 C5  SING N N 13 
GAF C4 H4  SING N N 14 
GAF O4 HO4 SING N N 15 
GAF C5 O5  SING N N 16 
GAF C5 C6  SING N N 17 
GAF C5 H5  SING N N 18 
GAF C6 O6  SING N N 19 
GAF C6 H61 SING N N 20 
GAF C6 H62 SING N N 21 
GAF O6 HO6 SING N N 22 
GAF O1 HO1 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GAF SMILES           ACDLabs              10.04 "FC1C(O)C(O)C(OC1O)CO"                                                                 
GAF SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H](O)[C@H](F)[C@@H](O)[C@H]1O"                                            
GAF SMILES           CACTVS               3.341 "OC[CH]1O[CH](O)[CH](F)[CH](O)[CH]1O"                                                  
GAF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)F)O)O)O"                                      
GAF SMILES           "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)F)O)O)O"                                                             
GAF InChI            InChI                1.03  "InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4+,5-,6+/m1/s1" 
GAF InChIKey         InChI                1.03  ZCXUVYAZINUVJD-DVKNGEFBSA-N                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GAF "SYSTEMATIC NAME"           ACDLabs              10.04 2-deoxy-2-fluoro-alpha-D-galactopyranose                       
GAF "SYSTEMATIC NAME"           "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R,6R)-3-fluoro-6-(hydroxymethyl)oxane-2,4,5-triol" 
GAF "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE             1.0   a-D-Galp2fluoro                                                
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
GAF "CARBOHYDRATE ISOMER"                 D        PDB ? 
GAF "CARBOHYDRATE RING"                   pyranose PDB ? 
GAF "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
GAF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GAF "Create component"         2004-02-11 EBI  
GAF "Modify descriptor"        2011-06-04 RCSB 
GAF "Other modification"       2020-07-03 RCSB 
GAF "Modify name"              2020-07-17 RCSB 
GAF "Modify synonyms"          2020-07-17 RCSB 
GAF "Modify internal type"     2020-07-17 RCSB 
GAF "Modify linking type"      2020-07-17 RCSB 
GAF "Modify atom id"           2020-07-17 RCSB 
GAF "Modify component atom id" 2020-07-17 RCSB 
GAF "Modify leaving atom flag" 2020-07-17 RCSB 
GAF "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GAF 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#