data_GAF # _chem_comp.id GAF _chem_comp.name 2-deoxy-2-fluoro-alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H11 F O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-DEOXY-2-FLUORO-GALACTOSE; 2-deoxy-2-fluoro-alpha-D-galactose; 2-deoxy-2-fluoro-D-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-02-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 182.147 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GAF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GAF 2-DEOXY-2-FLUORO-GALACTOSE PDB ? 2 GAF 2-deoxy-2-fluoro-alpha-D-galactose PDB ? 3 GAF 2-deoxy-2-fluoro-D-galactose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GAF C1 C1 C 0 1 N N S N N N 119.774 38.094 65.006 1.414 -0.495 -0.365 C1 GAF 1 GAF C2 C2 C 0 1 N N R N N N 118.893 37.421 63.941 0.373 -0.501 -1.487 C2 GAF 2 GAF F2 F2 F 0 1 N N N N N N 118.442 36.172 64.360 1.004 -0.255 -2.712 F2 GAF 3 GAF C3 C3 C 0 1 N N S N N N 119.712 37.262 62.681 -0.664 0.592 -1.213 C3 GAF 4 GAF O3 O3 O 0 1 N N N N N N 118.875 36.675 61.705 -1.721 0.502 -2.170 O3 GAF 5 GAF C4 C4 C 0 1 N N R N N N 120.258 38.615 62.202 -1.225 0.390 0.198 C4 GAF 6 GAF O4 O4 O 0 1 N N N N N N 119.131 39.413 61.888 -1.966 -0.830 0.248 O4 GAF 7 GAF C5 C5 C 0 1 N N R N N N 121.085 39.248 63.341 -0.064 0.331 1.193 C5 GAF 8 GAF O5 O5 O 0 1 N N N N N N 120.272 39.336 64.523 0.780 -0.774 0.881 O5 GAF 9 GAF C6 C6 C 0 1 N N N N N N 121.643 40.654 63.045 -0.616 0.166 2.610 C6 GAF 10 GAF O6 O6 O 0 1 N N N N N N 120.636 41.605 63.365 0.466 0.113 3.540 O6 GAF 11 GAF O1 O1 O 0 1 N Y N N N N 120.891 37.228 65.258 2.037 0.789 -0.305 O1 GAF 12 GAF H1 H1C1 H 0 1 N N N N N N 119.237 38.210 65.976 2.168 -1.255 -0.566 H1 GAF 13 GAF H2 H2 H 0 1 N N N N N N 118.015 38.074 63.727 -0.120 -1.472 -1.521 H2 GAF 14 GAF H3 H3 H 0 1 N N N N N N 120.567 36.577 62.887 -0.190 1.571 -1.283 H3 GAF 15 GAF HO3 HA H 0 1 N Y N N N N 119.390 36.575 60.913 -1.319 0.621 -3.042 HO3 GAF 16 GAF H4 H4 H 0 1 N N N N N N 120.894 38.474 61.297 -1.880 1.224 0.453 H4 GAF 17 GAF HO4 HB H 0 1 N Y N N N N 119.469 40.250 61.592 -2.681 -0.749 -0.396 HO4 GAF 18 GAF H5 H5 H 0 1 N N N N N N 121.945 38.573 63.561 0.510 1.255 1.134 H5 GAF 19 GAF H61 H6C1 H 0 1 N N N N N N 122.017 40.758 62.000 -1.192 -0.757 2.670 H61 GAF 20 GAF H62 H6C2 H 0 1 N N N N N N 122.606 40.854 63.569 -1.261 1.011 2.850 H62 GAF 21 GAF HO6 H6 H 0 1 N N N N N N 120.980 42.472 63.183 0.076 0.009 4.419 HO6 GAF 22 GAF HO1 H1 H 0 1 N Y N N N N 121.435 37.643 65.916 2.688 0.750 0.409 HO1 GAF 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GAF C1 C2 SING N N 1 GAF C1 O5 SING N N 2 GAF C1 O1 SING N N 3 GAF C1 H1 SING N N 4 GAF C2 F2 SING N N 5 GAF C2 C3 SING N N 6 GAF C2 H2 SING N N 7 GAF C3 O3 SING N N 8 GAF C3 C4 SING N N 9 GAF C3 H3 SING N N 10 GAF O3 HO3 SING N N 11 GAF C4 O4 SING N N 12 GAF C4 C5 SING N N 13 GAF C4 H4 SING N N 14 GAF O4 HO4 SING N N 15 GAF C5 O5 SING N N 16 GAF C5 C6 SING N N 17 GAF C5 H5 SING N N 18 GAF C6 O6 SING N N 19 GAF C6 H61 SING N N 20 GAF C6 H62 SING N N 21 GAF O6 HO6 SING N N 22 GAF O1 HO1 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GAF SMILES ACDLabs 10.04 "FC1C(O)C(O)C(OC1O)CO" GAF SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O)[C@H](F)[C@@H](O)[C@H]1O" GAF SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](F)[CH](O)[CH]1O" GAF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)F)O)O)O" GAF SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)F)O)O)O" GAF InChI InChI 1.03 "InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4+,5-,6+/m1/s1" GAF InChIKey InChI 1.03 ZCXUVYAZINUVJD-DVKNGEFBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAF "SYSTEMATIC NAME" ACDLabs 10.04 2-deoxy-2-fluoro-alpha-D-galactopyranose GAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R,6R)-3-fluoro-6-(hydroxymethyl)oxane-2,4,5-triol" GAF "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Galp2fluoro # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GAF "CARBOHYDRATE ISOMER" D PDB ? GAF "CARBOHYDRATE RING" pyranose PDB ? GAF "CARBOHYDRATE ANOMER" alpha PDB ? GAF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GAF "Create component" 2004-02-11 EBI GAF "Modify descriptor" 2011-06-04 RCSB GAF "Other modification" 2020-07-03 RCSB GAF "Modify name" 2020-07-17 RCSB GAF "Modify synonyms" 2020-07-17 RCSB GAF "Modify internal type" 2020-07-17 RCSB GAF "Modify linking type" 2020-07-17 RCSB GAF "Modify atom id" 2020-07-17 RCSB GAF "Modify component atom id" 2020-07-17 RCSB GAF "Modify leaving atom flag" 2020-07-17 RCSB GAF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GAF _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #