data_GAO # _chem_comp.id GAO _chem_comp.name ;GUANINE ARABINOSE-5'-PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-12-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.221 _chem_comp.one_letter_code G _chem_comp.three_letter_code GAO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GAO OP3 O3P O 0 1 N Y N -9.518 2.864 4.985 -1.962 -1.342 5.576 OP3 GAO 1 GAO P P P 0 1 N N N -9.513 2.683 3.380 -0.885 -0.299 4.989 P GAO 2 GAO OP1 O1P O 0 1 N N N -10.821 3.135 2.860 -1.524 1.023 4.815 OP1 GAO 3 GAO OP2 O2P O 0 1 N N N -9.025 1.320 3.062 0.348 -0.169 6.015 OP2 GAO 4 GAO "O5'" O5* O 0 1 N N N -8.392 3.737 2.908 -0.347 -0.827 3.566 "O5'" GAO 5 GAO "C5'" C5* C 0 1 N N N -8.604 5.161 3.034 0.599 0.135 3.100 "C5'" GAO 6 GAO "C4'" C4* C 0 1 N N R -7.298 5.933 3.054 1.152 -0.308 1.744 "C4'" GAO 7 GAO "O4'" O4* O 0 1 N N N -6.437 5.460 4.095 0.089 -0.390 0.770 "O4'" GAO 8 GAO "C3'" C3* C 0 1 N N S -6.543 5.771 1.746 2.121 0.755 1.182 "C3'" GAO 9 GAO "O3'" O3* O 0 1 N N N -6.734 6.915 0.897 3.476 0.390 1.451 "O3'" GAO 10 GAO "C2'" C2* C 0 1 N N S -5.098 5.609 2.138 1.848 0.745 -0.340 "C2'" GAO 11 GAO "O2'" O2* O 0 1 N N N -4.569 4.376 1.623 1.383 2.025 -0.773 "O2'" GAO 12 GAO "C1'" C1* C 0 1 N N R -5.084 5.637 3.658 0.744 -0.320 -0.514 "C1'" GAO 13 GAO N9 N9 N 0 1 Y N N -4.211 4.592 4.209 -0.206 0.094 -1.549 N9 GAO 14 GAO C8 C8 C 0 1 Y N N -4.309 3.251 4.105 -1.324 0.854 -1.361 C8 GAO 15 GAO N7 N7 N 0 1 Y N N -3.416 2.535 4.701 -1.935 1.028 -2.496 N7 GAO 16 GAO C5 C5 C 0 1 Y N N -2.609 3.523 5.280 -1.248 0.394 -3.477 C5 GAO 17 GAO C6 C6 C 0 1 N N N -1.440 3.404 6.079 -1.434 0.244 -4.871 C6 GAO 18 GAO O6 O6 O 0 1 N N N -0.852 2.390 6.443 -2.390 0.753 -5.432 O6 GAO 19 GAO N1 N1 N 0 1 N N N -0.954 4.645 6.444 -0.524 -0.472 -5.567 N1 GAO 20 GAO C2 C2 C 0 1 N N N -1.507 5.853 6.092 0.536 -1.041 -4.929 C2 GAO 21 GAO N2 N2 N 0 1 N N N -0.892 6.933 6.532 1.441 -1.768 -5.660 N2 GAO 22 GAO N3 N3 N 0 1 N N N -2.595 5.980 5.350 0.721 -0.909 -3.634 N3 GAO 23 GAO C4 C4 C 0 1 Y N N -3.096 4.785 4.978 -0.135 -0.209 -2.881 C4 GAO 24 GAO HOP3 3HOP H 0 0 N N N -8.677 2.573 5.319 -2.258 -0.990 6.426 HOP3 GAO 25 GAO HOP2 2HOP H 0 0 N N N -9.022 1.213 2.118 0.735 -1.051 6.100 HOP2 GAO 26 GAO "H5'" 1H5* H 0 1 N N N -9.285 5.540 2.236 1.417 0.217 3.817 "H5'" GAO 27 GAO "H5''" 2H5* H 0 0 N N N -9.227 5.399 3.927 0.111 1.104 2.994 "H5''" GAO 28 GAO "H4'" H4* H 0 1 N N N -7.566 7.002 3.220 1.657 -1.269 1.837 "H4'" GAO 29 GAO "H3'" H3* H 0 1 N N N -6.906 4.894 1.160 1.900 1.735 1.605 "H3'" GAO 30 GAO "HO3'" H3T H 0 0 N Y N -6.261 6.813 0.078 4.033 1.087 1.078 "HO3'" GAO 31 GAO "H2'" H2* H 0 1 N N N -4.455 6.417 1.717 2.747 0.461 -0.887 "H2'" GAO 32 GAO "HO2'" 2HO* H 0 0 N N N -3.657 4.273 1.870 2.088 2.658 -0.582 "HO2'" GAO 33 GAO "H1'" H1* H 0 1 N N N -4.675 6.608 4.021 1.184 -1.284 -0.769 "H1'" GAO 34 GAO H8 H8 H 0 1 N N N -5.109 2.745 3.539 -1.652 1.250 -0.411 H8 GAO 35 GAO H1 H1 H 0 1 N N N -0.114 4.671 7.023 -0.631 -0.588 -6.524 H1 GAO 36 GAO H21 1H2 H 0 1 N N N -1.302 7.829 6.270 2.204 -2.177 -5.221 H21 GAO 37 GAO H22 2H2 H 0 1 N N N 0.087 6.908 6.249 1.316 -1.878 -6.616 H22 GAO 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GAO OP3 P SING N N 1 GAO OP3 HOP3 SING N N 2 GAO P OP1 DOUB N N 3 GAO P OP2 SING N N 4 GAO P "O5'" SING N N 5 GAO OP2 HOP2 SING N N 6 GAO "O5'" "C5'" SING N N 7 GAO "C5'" "C4'" SING N N 8 GAO "C5'" "H5'" SING N N 9 GAO "C5'" "H5''" SING N N 10 GAO "C4'" "O4'" SING N N 11 GAO "C4'" "C3'" SING N N 12 GAO "C4'" "H4'" SING N N 13 GAO "O4'" "C1'" SING N N 14 GAO "C3'" "O3'" SING N N 15 GAO "C3'" "C2'" SING N N 16 GAO "C3'" "H3'" SING N N 17 GAO "O3'" "HO3'" SING N N 18 GAO "C2'" "O2'" SING N N 19 GAO "C2'" "C1'" SING N N 20 GAO "C2'" "H2'" SING N N 21 GAO "O2'" "HO2'" SING N N 22 GAO "C1'" N9 SING N N 23 GAO "C1'" "H1'" SING N N 24 GAO N9 C8 SING Y N 25 GAO N9 C4 SING Y N 26 GAO C8 N7 DOUB Y N 27 GAO C8 H8 SING N N 28 GAO N7 C5 SING Y N 29 GAO C5 C6 SING N N 30 GAO C5 C4 DOUB Y N 31 GAO C6 O6 DOUB N N 32 GAO C6 N1 SING N N 33 GAO N1 C2 SING N N 34 GAO N1 H1 SING N N 35 GAO C2 N2 SING N N 36 GAO C2 N3 DOUB N N 37 GAO N2 H21 SING N N 38 GAO N2 H22 SING N N 39 GAO N3 C4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GAO SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N)N1)C3OC(C(O)C3O)COP(=O)(O)O" GAO SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3O" GAO SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" GAO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" GAO SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" GAO InChI InChI 1.03 "InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6+,9-/m1/s1" GAO InChIKey InChI 1.03 RQFCJASXJCIDSX-FJFJXFQQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAO "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-(5-O-phosphono-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one" GAO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GAO "Create component" 2000-12-18 EBI GAO "Modify descriptor" 2011-06-04 RCSB #