data_GAP
#
_chem_comp.id GAP
_chem_comp.name "GLYCYL-ADENOSINE-5'-PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H17 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 404.273
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GAP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GGM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GAP N N N 1 1 N N N 19.308 24.462 37.709 -7.880 2.447 -0.410 N GAP 1
GAP CA CA C 0 1 N N N 19.540 23.669 36.462 -6.619 2.159 -1.106 CA GAP 2
GAP C C C 0 1 N N N 21.002 23.447 36.020 -5.815 1.171 -0.300 C GAP 3
GAP O O O 0 1 N N N 21.822 23.274 36.966 -6.249 0.750 0.747 O GAP 4
GAP PA PA P 0 1 N N N 22.787 23.211 34.246 -3.760 -0.298 0.116 PA GAP 5
GAP O1A O1A O 0 1 N N N 22.669 22.674 32.859 -4.511 -1.646 0.175 O1A GAP 6
GAP O2A O2A O -1 1 N N N 23.557 22.455 35.261 -3.562 0.245 1.549 O2A GAP 7
GAP O3A O3A O 0 1 N N N 21.272 23.443 34.774 -4.618 0.758 -0.745 O3A GAP 8
GAP "C5'" C5* C 0 1 N N N 22.626 25.788 33.772 -1.569 -1.364 0.289 "C5'" GAP 9
GAP "O5'" O5* O 0 1 N N N 23.425 24.667 34.131 -2.323 -0.515 -0.579 "O5'" GAP 10
GAP "C4'" C4* C 0 1 N N R 23.497 26.885 33.240 -0.185 -1.611 -0.316 "C4'" GAP 11
GAP "O4'" O4* O 0 1 N N N 24.465 27.152 34.270 0.578 -0.385 -0.343 "O4'" GAP 12
GAP "C3'" C3* C 0 1 N N S 24.312 26.566 32.000 0.633 -2.566 0.581 "C3'" GAP 13
GAP "O3'" O3* O 0 1 N N N 23.605 26.980 30.837 0.570 -3.902 0.079 "O3'" GAP 14
GAP "C2'" C2* C 0 1 N N R 25.532 27.457 32.164 2.078 -2.020 0.492 "C2'" GAP 15
GAP "O2'" O2* O 0 1 N N N 25.304 28.771 31.699 2.951 -3.003 -0.066 "O2'" GAP 16
GAP "C1'" C1* C 0 1 N N R 25.696 27.467 33.683 1.958 -0.798 -0.446 "C1'" GAP 17
GAP N9 N9 N 0 1 Y N N 26.671 26.547 34.212 2.847 0.277 0.000 N9 GAP 18
GAP C8 C8 C 0 1 Y N N 26.474 25.289 34.708 2.512 1.311 0.824 C8 GAP 19
GAP N7 N7 N 0 1 Y N N 27.562 24.736 35.181 3.544 2.081 1.013 N7 GAP 20
GAP C5 C5 C 0 1 Y N N 28.542 25.699 34.969 4.605 1.589 0.329 C5 GAP 21
GAP C6 C6 C 0 1 Y N N 29.915 25.742 35.273 5.940 1.991 0.154 C6 GAP 22
GAP N6 N6 N 0 1 N N N 30.580 24.754 35.855 6.425 3.128 0.777 N6 GAP 23
GAP N1 N1 N 0 1 Y N N 30.593 26.852 34.952 6.728 1.250 -0.619 N1 GAP 24
GAP C2 C2 C 0 1 Y N N 29.925 27.843 34.352 6.274 0.164 -1.217 C2 GAP 25
GAP N3 N3 N 0 1 Y N N 28.643 27.923 34.007 5.030 -0.247 -1.087 N3 GAP 26
GAP C4 C4 C 0 1 Y N N 28.001 26.799 34.358 4.168 0.429 -0.334 C4 GAP 27
GAP H1 1H H 0 1 N N N 18.341 24.608 38.001 -8.418 3.109 -0.949 H1 GAP 28
GAP H2A 2H H 0 1 N N N 19.832 24.043 38.477 -8.407 1.594 -0.301 H2A GAP 29
GAP H3 3H H 0 1 N N N 19.776 25.364 37.626 -7.681 2.838 0.499 H3 GAP 30
GAP HA1 1HA H 0 1 N N N 19.028 22.682 36.552 -6.049 3.081 -1.223 HA1 GAP 31
GAP HA2 2HA H 0 1 N N N 18.966 24.126 35.622 -6.834 1.737 -2.088 HA2 GAP 32
GAP "H5'1" 1H5* H 0 0 N N N 21.815 25.512 33.057 -2.088 -2.315 0.408 "H5'1" GAP 33
GAP "H5'2" 2H5* H 0 0 N N N 21.986 26.133 34.617 -1.460 -0.885 1.262 "H5'2" GAP 34
GAP "H4'" H4* H 0 1 N N N 22.807 27.715 32.961 -0.279 -2.022 -1.321 "H4'" GAP 35
GAP "H3'" H3* H 0 1 N N N 24.542 25.480 31.892 0.272 -2.527 1.609 "H3'" GAP 36
GAP "HO'3" 3HO* H 0 0 N N N 24.115 26.780 30.060 1.097 -4.450 0.676 "HO'3" GAP 37
GAP "H2'" H2* H 0 1 N N N 26.416 27.095 31.589 2.431 -1.711 1.475 "H2'" GAP 38
GAP "HO'2" 2HO* H 0 0 N N N 26.066 29.328 31.801 2.937 -3.762 0.533 "HO'2" GAP 39
GAP "H1'" H1* H 0 1 N N N 26.061 28.491 33.927 2.193 -1.082 -1.472 "H1'" GAP 40
GAP H8 H8 H 0 1 N N N 25.507 24.758 34.725 1.534 1.467 1.256 H8 GAP 41
GAP H61 H61 H 0 1 N N N 31.575 24.785 36.075 7.349 3.392 0.652 H61 GAP 42
GAP H62 H62 H 0 1 N N N 30.425 23.917 35.291 5.839 3.662 1.335 H62 GAP 43
GAP H2 H2 H 0 1 N N N 30.525 28.734 34.102 6.948 -0.409 -1.836 H2 GAP 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GAP N CA SING N N 1
GAP N H1 SING N N 2
GAP N H2A SING N N 3
GAP N H3 SING N N 4
GAP CA C SING N N 5
GAP CA HA1 SING N N 6
GAP CA HA2 SING N N 7
GAP C O DOUB N N 8
GAP C O3A SING N N 9
GAP PA O1A DOUB N N 10
GAP PA O2A SING N N 11
GAP PA O3A SING N N 12
GAP PA "O5'" SING N N 13
GAP "C5'" "O5'" SING N N 14
GAP "C5'" "C4'" SING N N 15
GAP "C5'" "H5'1" SING N N 16
GAP "C5'" "H5'2" SING N N 17
GAP "C4'" "O4'" SING N N 18
GAP "C4'" "C3'" SING N N 19
GAP "C4'" "H4'" SING N N 20
GAP "O4'" "C1'" SING N N 21
GAP "C3'" "O3'" SING N N 22
GAP "C3'" "C2'" SING N N 23
GAP "C3'" "H3'" SING N N 24
GAP "O3'" "HO'3" SING N N 25
GAP "C2'" "O2'" SING N N 26
GAP "C2'" "C1'" SING N N 27
GAP "C2'" "H2'" SING N N 28
GAP "O2'" "HO'2" SING N N 29
GAP "C1'" N9 SING N N 30
GAP "C1'" "H1'" SING N N 31
GAP N9 C8 SING Y N 32
GAP N9 C4 SING Y N 33
GAP C8 N7 DOUB Y N 34
GAP C8 H8 SING N N 35
GAP N7 C5 SING Y N 36
GAP C5 C6 SING Y N 37
GAP C5 C4 DOUB Y N 38
GAP C6 N6 SING N N 39
GAP C6 N1 DOUB Y N 40
GAP N6 H61 SING N N 41
GAP N6 H62 SING N N 42
GAP N1 C2 SING Y N 43
GAP C2 N3 DOUB Y N 44
GAP C2 H2 SING N N 45
GAP N3 C4 SING Y N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GAP SMILES ACDLabs 10.04 "[O-]P(=O)(OC(=O)C[NH3+])OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
GAP SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P]([O-])(=O)OC(=O)C[NH3+])[C@@H](O)[C@H]3O"
GAP SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P]([O-])(=O)OC(=O)C[NH3+])[CH](O)[CH]3O"
GAP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)([O-])OC(=O)C[NH3+])O)O)N"
GAP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)([O-])OC(=O)C[NH3+])O)O)N"
GAP InChI InChI 1.03 "InChI=1S/C12H17N6O8P/c13-1-6(19)26-27(22,23)24-2-5-8(20)9(21)12(25-5)18-4-17-7-10(14)15-3-16-11(7)18/h3-5,8-9,12,20-21H,1-2,13H2,(H,22,23)(H2,14,15,16)/t5-,8-,9-,12-/m1/s1"
GAP InChIKey InChI 1.03 HROXHMRQKGGIFT-JJNLEZRASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GAP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-{[(ammonioacetyl)oxy]phosphinato}adenosine"
GAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl 2-azaniumylethanoyl phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GAP "Create component" 1999-07-08 EBI
GAP "Modify descriptor" 2011-06-04 RCSB
#