data_GBE # _chem_comp.id GBE _chem_comp.name "3-{4-[2-(beta-D-glucopyranosyloxy)ethyl]piperazin-1-yl}propane-1-sulfonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H30 N2 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-10-20 _chem_comp.pdbx_modified_date 2012-06-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.472 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GBE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VIO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GBE C1 C1 C 0 1 N N R -27.019 82.896 14.711 -3.518 0.059 0.026 C1 GBE 1 GBE O1 O1 O 0 1 N N N -27.021 83.339 13.347 -2.564 -0.879 -0.476 O1 GBE 2 GBE C2 C2 C 0 1 N N R -28.431 82.902 15.348 -3.906 1.037 -1.087 C2 GBE 3 GBE O2 O2 O 0 1 N N N -28.922 84.192 15.767 -2.753 1.778 -1.495 O2 GBE 4 GBE C3 C3 C 0 1 N N S -28.697 81.831 16.410 -4.973 2.001 -0.559 C3 GBE 5 GBE O3 O3 O 0 1 N N N -30.129 81.674 16.446 -5.394 2.871 -1.612 O3 GBE 6 GBE C4 C4 C 0 1 N N S -28.004 80.548 15.957 -6.171 1.192 -0.053 C4 GBE 7 GBE O4 O4 O 0 1 N N N -28.292 79.482 16.857 -7.142 2.077 0.508 O4 GBE 8 GBE C5 C5 C 0 1 N N R -26.499 80.790 15.755 -5.696 0.208 1.019 C5 GBE 9 GBE O5 O5 O 0 1 N N N -26.404 81.608 14.593 -4.683 -0.638 0.472 O5 GBE 10 GBE C6 C6 C 0 1 N N N -25.585 79.585 15.511 -6.876 -0.646 1.487 C6 GBE 11 GBE O6 O6 O 0 1 N N N -25.723 79.122 14.162 -6.460 -1.482 2.568 O6 GBE 12 GBE OAA OAA O 0 1 N N N -23.088 77.717 4.886 8.352 1.793 0.154 OAA GBE 13 GBE OAB OAB O 0 1 N N N -23.628 75.992 6.480 7.811 -0.141 1.323 OAB GBE 14 GBE OAG OAG O 0 1 N N N -24.707 76.006 4.307 6.541 1.964 1.601 OAG GBE 15 GBE CAH CAH C 0 1 N N N -24.958 78.738 7.113 4.939 -0.227 -0.142 CAH GBE 16 GBE CAJ CAJ C 0 1 N N N -25.777 83.873 12.864 -2.049 -1.770 0.515 CAJ GBE 17 GBE CAK CAK C 0 1 N N N -26.081 79.659 7.595 4.053 -0.604 -1.332 CAK GBE 18 GBE CAL CAL C 0 1 N N N -24.901 82.863 12.118 -1.042 -2.724 -0.130 CAL GBE 19 GBE CAM CAM C 0 1 N N N -25.219 79.922 9.802 2.146 -1.949 -1.980 CAM GBE 20 GBE CAN CAN C 0 1 N N N -26.564 81.692 8.880 2.017 -0.529 -0.023 CAN GBE 21 GBE CAO CAO C 0 1 N N N -24.659 80.942 10.788 0.994 -2.799 -1.439 CAO GBE 22 GBE CAP CAP C 0 1 N N N -26.024 82.695 9.906 0.865 -1.379 0.517 CAP GBE 23 GBE CAQ CAQ C 0 1 N N N -25.420 77.791 6.006 6.148 0.568 -0.639 CAQ GBE 24 GBE NAY NAY N 0 1 N N N -25.574 80.640 8.571 2.892 -1.367 -0.855 NAY GBE 25 GBE NAZ NAZ N 0 1 N N N -25.613 82.004 11.144 0.119 -1.961 -0.607 NAZ GBE 26 GBE SBA SBA S 0 1 N N N -24.178 76.852 5.406 7.198 1.016 0.771 SBA GBE 27 GBE H1 H1 H 0 1 N N N -26.478 83.553 15.408 -3.083 0.611 0.859 H1 GBE 28 GBE H2 H2 H 0 1 N N N -29.036 82.611 14.476 -4.302 0.483 -1.937 H2 GBE 29 GBE HO2 HO2 H 0 1 N N N -29.789 84.095 16.143 -2.034 1.229 -1.836 HO2 GBE 30 GBE H3 H3 H 0 1 N N N -28.318 82.090 17.410 -4.559 2.592 0.258 H3 GBE 31 GBE HO3 HO3 H 0 1 N N N -30.360 81.017 17.092 -4.683 3.410 -1.985 HO3 GBE 32 GBE H4 H4 H 0 1 N N N -28.401 80.242 14.978 -6.615 0.642 -0.883 H4 GBE 33 GBE HO4 HO4 H 0 1 N N N -27.855 78.692 16.563 -7.484 2.733 -0.116 HO4 GBE 34 GBE H5 H5 H 0 1 N N N -26.143 81.208 16.708 -5.289 0.761 1.866 H5 GBE 35 GBE H6 H6 H 0 1 N N N -24.540 79.882 15.687 -7.685 0.004 1.821 H6 GBE 36 GBE H6A H6A H 0 1 N N N -25.862 78.775 16.202 -7.226 -1.265 0.661 H6A GBE 37 GBE HO6 HO6 H 0 1 N N N -25.152 78.376 14.023 -7.159 -2.053 2.915 HO6 GBE 38 GBE HOAA HOAA H 0 0 N N N -22.283 77.529 5.354 9.006 2.103 0.795 HOAA GBE 39 GBE HAH HAH H 0 1 N N N -24.139 79.360 6.722 4.367 0.382 0.558 HAH GBE 40 GBE HAHA HAHA H 0 0 N N N -24.609 78.136 7.965 5.280 -1.133 0.358 HAHA GBE 41 GBE HAJ HAJ H 0 1 N N N -26.009 84.695 12.171 -1.555 -1.196 1.299 HAJ GBE 42 GBE HAJA HAJA H 0 0 N N N -25.207 84.238 13.731 -2.868 -2.345 0.948 HAJA GBE 43 GBE HAK HAK H 0 1 N N N -26.499 80.197 6.731 3.712 0.302 -1.832 HAK GBE 44 GBE HAKA HAKA H 0 0 N N N -26.863 79.050 8.072 4.625 -1.213 -2.032 HAKA GBE 45 GBE HAL HAL H 0 1 N N N -24.138 83.430 11.565 -0.716 -3.460 0.604 HAL GBE 46 GBE HALA HALA H 0 0 N N N -24.442 82.203 12.869 -1.512 -3.234 -0.971 HALA GBE 47 GBE HAM HAM H 0 1 N N N -24.464 79.152 9.586 2.813 -2.575 -2.573 HAM GBE 48 GBE HAMA HAMA H 0 0 N N N -26.110 79.437 10.226 1.747 -1.149 -2.603 HAMA GBE 49 GBE HAN HAN H 0 1 N N N -27.467 81.217 9.291 1.616 0.287 -0.625 HAN GBE 50 GBE HANA HANA H 0 0 N N N -26.807 82.231 7.953 2.589 -0.120 0.810 HANA GBE 51 GBE HAO HAO H 0 1 N N N -24.381 80.410 11.709 0.422 -3.208 -2.272 HAO GBE 52 GBE HAOA HAOA H 0 0 N N N -23.778 81.414 10.328 1.395 -3.615 -0.837 HAOA GBE 53 GBE HAP HAP H 0 1 N N N -25.153 83.214 9.478 1.265 -2.179 1.141 HAP GBE 54 GBE HAPA HAPA H 0 0 N N N -26.812 83.424 10.146 0.198 -0.753 1.111 HAPA GBE 55 GBE HAQ HAQ H 0 1 N N N -26.192 77.125 6.418 6.720 -0.040 -1.339 HAQ GBE 56 GBE HAQA HAQA H 0 0 N N N -25.831 78.393 5.182 5.807 1.474 -1.140 HAQA GBE 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GBE C1 O1 SING N N 1 GBE C1 C2 SING N N 2 GBE C1 O5 SING N N 3 GBE O1 CAJ SING N N 4 GBE C2 O2 SING N N 5 GBE C2 C3 SING N N 6 GBE C3 O3 SING N N 7 GBE C3 C4 SING N N 8 GBE C4 O4 SING N N 9 GBE C4 C5 SING N N 10 GBE C5 O5 SING N N 11 GBE C5 C6 SING N N 12 GBE C6 O6 SING N N 13 GBE OAA SBA SING N N 14 GBE OAB SBA DOUB N N 15 GBE OAG SBA DOUB N N 16 GBE CAH CAK SING N N 17 GBE CAH CAQ SING N N 18 GBE CAJ CAL SING N N 19 GBE CAK NAY SING N N 20 GBE CAL NAZ SING N N 21 GBE CAM CAO SING N N 22 GBE CAM NAY SING N N 23 GBE CAN CAP SING N N 24 GBE CAN NAY SING N N 25 GBE CAO NAZ SING N N 26 GBE CAP NAZ SING N N 27 GBE CAQ SBA SING N N 28 GBE C1 H1 SING N N 29 GBE C2 H2 SING N N 30 GBE O2 HO2 SING N N 31 GBE C3 H3 SING N N 32 GBE O3 HO3 SING N N 33 GBE C4 H4 SING N N 34 GBE O4 HO4 SING N N 35 GBE C5 H5 SING N N 36 GBE C6 H6 SING N N 37 GBE C6 H6A SING N N 38 GBE O6 HO6 SING N N 39 GBE OAA HOAA SING N N 40 GBE CAH HAH SING N N 41 GBE CAH HAHA SING N N 42 GBE CAJ HAJ SING N N 43 GBE CAJ HAJA SING N N 44 GBE CAK HAK SING N N 45 GBE CAK HAKA SING N N 46 GBE CAL HAL SING N N 47 GBE CAL HALA SING N N 48 GBE CAM HAM SING N N 49 GBE CAM HAMA SING N N 50 GBE CAN HAN SING N N 51 GBE CAN HANA SING N N 52 GBE CAO HAO SING N N 53 GBE CAO HAOA SING N N 54 GBE CAP HAP SING N N 55 GBE CAP HAPA SING N N 56 GBE CAQ HAQ SING N N 57 GBE CAQ HAQA SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GBE SMILES ACDLabs 12.01 "O=S(=O)(O)CCCN2CCN(CCOC1OC(C(O)C(O)C1O)CO)CC2" GBE InChI InChI 1.03 "InChI=1S/C15H30N2O9S/c18-10-11-12(19)13(20)14(21)15(26-11)25-8-7-17-5-3-16(4-6-17)2-1-9-27(22,23)24/h11-15,18-21H,1-10H2,(H,22,23,24)/t11-,12-,13+,14-,15-/m1/s1" GBE InChIKey InChI 1.03 DAJNLGJHGLHERP-UXXRCYHCSA-N GBE SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@@H](OCCN2CCN(CCC[S](O)(=O)=O)CC2)[C@H](O)[C@@H](O)[C@@H]1O" GBE SMILES CACTVS 3.370 "OC[CH]1O[CH](OCCN2CCN(CCC[S](O)(=O)=O)CC2)[CH](O)[CH](O)[CH]1O" GBE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1CN(CCN1CCCS(=O)(=O)O)CCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" GBE SMILES "OpenEye OEToolkits" 1.7.2 "C1CN(CCN1CCCS(=O)(=O)O)CCOC2C(C(C(C(O2)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GBE "SYSTEMATIC NAME" ACDLabs 12.01 "3-{4-[2-(beta-D-glucopyranosyloxy)ethyl]piperazin-1-yl}propane-1-sulfonic acid" GBE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "3-[4-[2-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyethyl]piperazin-1-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GBE "Create component" 2011-10-20 PDBJ #