data_GBH # _chem_comp.id GBH _chem_comp.name "2-{4-[2-(beta-D-glucopyranosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H28 N2 O9 S" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms ;2-{4-[2-(beta-D-glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid; 2-{4-[2-(D-glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid; 2-{4-[2-(glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-10-20 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GBH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VIM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GBH "2-{4-[2-(beta-D-glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid" PDB ? 2 GBH "2-{4-[2-(D-glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid" PDB ? 3 GBH "2-{4-[2-(glucosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GBH C1 C1 C 0 1 N N R -26.967 82.656 14.672 3.309 0.024 -0.105 C1 GBH 1 GBH O1 O1 O 0 1 N N N -27.035 83.152 13.353 2.146 -0.539 0.505 O1 GBH 2 GBH C2 C2 C 0 1 N N R -28.403 82.606 15.182 3.525 1.445 0.422 C2 GBH 3 GBH O2 O2 O 0 1 N N N -28.784 83.922 15.593 2.412 2.264 0.056 O2 GBH 4 GBH C3 C3 C 0 1 N N S -28.633 81.591 16.300 4.806 2.019 -0.191 C3 GBH 5 GBH O3 O3 O 0 1 N N N -30.058 81.458 16.435 5.055 3.317 0.352 O3 GBH 6 GBH C4 C4 C 0 1 N N S -27.965 80.268 15.932 5.978 1.091 0.142 C4 GBH 7 GBH O4 O4 O 0 1 N N N -28.199 79.323 16.976 7.166 1.578 -0.485 O4 GBH 8 GBH C5 C5 C 0 1 N N R -26.478 80.554 15.731 5.668 -0.317 -0.373 C5 GBH 9 GBH O5 O5 O 0 1 N N N -26.396 81.352 14.555 4.448 -0.779 0.211 O5 GBH 10 GBH C6 C6 C 0 1 N N N -25.614 79.332 15.477 6.807 -1.263 0.008 C6 GBH 11 GBH O6 O6 O 0 1 N N N -25.866 78.914 14.136 6.574 -2.548 -0.572 O6 GBH 12 GBH OAA OAA O 0 1 N N N -26.097 78.504 4.618 -6.752 2.055 0.261 OAA GBH 13 GBH OAB OAB O 0 1 N N N -27.580 77.180 6.035 -8.131 0.271 0.824 OAB GBH 14 GBH OAG OAG O 0 1 N N N -25.321 76.439 5.567 -7.534 0.414 -1.418 OAG GBH 15 GBH CAI CAI C 0 1 N N N -25.836 83.714 12.840 1.788 -1.826 -0.002 CAI GBH 16 GBH CAJ CAJ C 0 1 N N N -24.995 82.637 12.184 0.536 -2.329 0.719 CAJ GBH 17 GBH CAK CAK C 0 1 N N N -26.016 82.533 9.906 -1.099 -1.723 -0.962 CAK GBH 18 GBH CAL CAL C 0 1 N N N -24.793 80.755 10.817 -1.675 -1.599 1.386 CAL GBH 19 GBH CAM CAM C 0 1 N N N -26.658 81.553 8.919 -2.227 -0.741 -1.290 CAM GBH 20 GBH CAN CAN C 0 1 N N N -25.380 79.761 9.825 -2.802 -0.617 1.058 CAN GBH 21 GBH CAO CAO C 0 1 N N N -26.477 79.504 7.684 -4.438 -0.011 -0.622 CAO GBH 22 GBH CAP CAP C 0 1 N N N -25.545 78.437 7.114 -5.625 -0.364 0.276 CAP GBH 23 GBH NAX NAX N 0 1 N N N -25.719 81.842 11.162 -0.600 -1.455 0.394 NAX GBH 24 GBH NAY NAY N 0 1 N N N -25.755 80.432 8.574 -3.302 -0.884 -0.298 NAY GBH 25 GBH SAZ SAZ S 0 1 N N N -26.180 77.624 5.800 -7.027 0.715 -0.124 SAZ GBH 26 GBH H1 H1 H 0 1 N N N -26.366 83.261 15.367 3.174 0.054 -1.186 H1 GBH 27 GBH H2 H2 H 0 1 N N N -29.038 82.257 14.354 3.618 1.421 1.508 H2 GBH 28 GBH HO2 HO2 H 0 1 N Y N -29.678 83.908 15.914 1.565 1.956 0.407 HO2 GBH 29 GBH H3 H3 H 0 1 N N N -28.194 81.911 17.256 4.693 2.091 -1.272 H3 GBH 30 GBH HO3 HO3 H 0 1 N Y N -30.254 80.833 17.123 4.349 3.956 0.184 HO3 GBH 31 GBH H4 H4 H 0 1 N N N -28.375 79.837 15.007 6.123 1.060 1.222 H4 GBH 32 GBH HO4 HO4 H 0 1 N Y N -27.786 78.497 16.754 7.421 2.469 -0.208 HO4 GBH 33 GBH H5 H5 H 0 1 N N N -26.106 81.018 16.656 5.564 -0.291 -1.458 H5 GBH 34 GBH H61 H6 H 0 1 N N N -24.551 79.583 15.605 7.751 -0.863 -0.362 H61 GBH 35 GBH H62 H6A H 0 1 N N N -25.873 78.528 16.182 6.853 -1.358 1.093 H62 GBH 36 GBH HO6 HO6 H 0 1 N Y N -25.341 78.147 13.939 7.259 -3.201 -0.371 HO6 GBH 37 GBH HOAB HOAB H 0 0 N N N -27.625 76.232 5.986 -8.957 0.765 0.726 HOAB GBH 38 GBH HAI HAI H 0 1 N N N -26.086 84.484 12.095 1.587 -1.752 -1.071 HAI GBH 39 GBH HAIA HAIA H 0 0 N N N -25.266 84.168 13.664 2.609 -2.524 0.166 HAIA GBH 40 GBH HAJ HAJ H 0 1 N N N -24.142 83.126 11.691 0.315 -3.346 0.397 HAJ GBH 41 GBH HAJA HAJA H 0 0 N N N -24.653 81.948 12.970 0.707 -2.317 1.795 HAJA GBH 42 GBH HAK HAK H 0 1 N N N -25.083 82.927 9.476 -1.479 -2.743 -1.015 HAK GBH 43 GBH HAKA HAKA H 0 0 N N N -26.711 83.363 10.101 -0.289 -1.598 -1.679 HAKA GBH 44 GBH HAL HAL H 0 1 N N N -24.539 80.212 11.740 -1.283 -1.383 2.381 HAL GBH 45 GBH HALA HALA H 0 0 N N N -23.892 81.199 10.368 -2.060 -2.618 1.360 HALA GBH 46 GBH HAM HAM H 0 1 N N N -27.569 81.140 9.378 -1.841 0.278 -1.263 HAM GBH 47 GBH HAMA HAMA H 0 0 N N N -26.907 82.098 7.997 -2.619 -0.956 -2.284 HAMA GBH 48 GBH HAN HAN H 0 1 N N N -24.629 78.987 9.606 -3.613 -0.742 1.776 HAN GBH 49 GBH HANA HANA H 0 0 N N N -26.276 79.300 10.267 -2.423 0.403 1.111 HANA GBH 50 GBH HAO HAO H 0 1 N N N -26.911 80.077 6.851 -4.717 -0.151 -1.666 HAO GBH 51 GBH HAOA HAOA H 0 0 N N N -27.273 79.009 8.259 -4.154 1.029 -0.458 HAOA GBH 52 GBH HAP HAP H 0 1 N N N -24.616 78.931 6.794 -5.908 -1.403 0.112 HAP GBH 53 GBH HAPA HAPA H 0 0 N N N -25.343 77.701 7.906 -5.345 -0.223 1.320 HAPA GBH 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GBH C1 O1 SING N N 1 GBH C1 C2 SING N N 2 GBH C1 O5 SING N N 3 GBH O1 CAI SING N N 4 GBH C2 O2 SING N N 5 GBH C2 C3 SING N N 6 GBH C3 O3 SING N N 7 GBH C3 C4 SING N N 8 GBH C4 O4 SING N N 9 GBH C4 C5 SING N N 10 GBH C5 O5 SING N N 11 GBH C5 C6 SING N N 12 GBH C6 O6 SING N N 13 GBH OAA SAZ DOUB N N 14 GBH OAB SAZ SING N N 15 GBH OAG SAZ DOUB N N 16 GBH CAI CAJ SING N N 17 GBH CAJ NAX SING N N 18 GBH CAK CAM SING N N 19 GBH CAK NAX SING N N 20 GBH CAL CAN SING N N 21 GBH CAL NAX SING N N 22 GBH CAM NAY SING N N 23 GBH CAN NAY SING N N 24 GBH CAO CAP SING N N 25 GBH CAO NAY SING N N 26 GBH CAP SAZ SING N N 27 GBH C1 H1 SING N N 28 GBH C2 H2 SING N N 29 GBH O2 HO2 SING N N 30 GBH C3 H3 SING N N 31 GBH O3 HO3 SING N N 32 GBH C4 H4 SING N N 33 GBH O4 HO4 SING N N 34 GBH C5 H5 SING N N 35 GBH C6 H61 SING N N 36 GBH C6 H62 SING N N 37 GBH O6 HO6 SING N N 38 GBH OAB HOAB SING N N 39 GBH CAI HAI SING N N 40 GBH CAI HAIA SING N N 41 GBH CAJ HAJ SING N N 42 GBH CAJ HAJA SING N N 43 GBH CAK HAK SING N N 44 GBH CAK HAKA SING N N 45 GBH CAL HAL SING N N 46 GBH CAL HALA SING N N 47 GBH CAM HAM SING N N 48 GBH CAM HAMA SING N N 49 GBH CAN HAN SING N N 50 GBH CAN HANA SING N N 51 GBH CAO HAO SING N N 52 GBH CAO HAOA SING N N 53 GBH CAP HAP SING N N 54 GBH CAP HAPA SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GBH SMILES ACDLabs 12.01 "O=S(=O)(O)CCN2CCN(CCOC1OC(C(O)C(O)C1O)CO)CC2" GBH InChI InChI 1.03 "InChI=1S/C14H28N2O9S/c17-9-10-11(18)12(19)13(20)14(25-10)24-7-5-15-1-3-16(4-2-15)6-8-26(21,22)23/h10-14,17-20H,1-9H2,(H,21,22,23)/t10-,11-,12+,13-,14-/m1/s1" GBH InChIKey InChI 1.03 RRNQQJMHWBFGHX-RKQHYHRCSA-N GBH SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@@H](OCCN2CCN(CC2)CC[S](O)(=O)=O)[C@H](O)[C@@H](O)[C@@H]1O" GBH SMILES CACTVS 3.370 "OC[CH]1O[CH](OCCN2CCN(CC2)CC[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O" GBH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1CN(CCN1CCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CCS(=O)(=O)O" GBH SMILES "OpenEye OEToolkits" 1.7.2 "C1CN(CCN1CCOC2C(C(C(C(O2)CO)O)O)O)CCS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GBH "SYSTEMATIC NAME" ACDLabs 12.01 "2-{4-[2-(beta-D-glucopyranosyloxy)ethyl]piperazin-1-yl}ethanesulfonic acid" GBH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[4-[2-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyethyl]piperazin-1-yl]ethanesulfonic acid" # _pdbx_chem_comp_related.comp_id GBH _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GBH C1 BGC C1 "Carbohydrate core" 2 GBH C2 BGC C2 "Carbohydrate core" 3 GBH C3 BGC C3 "Carbohydrate core" 4 GBH C4 BGC C4 "Carbohydrate core" 5 GBH C5 BGC C5 "Carbohydrate core" 6 GBH C6 BGC C6 "Carbohydrate core" 7 GBH O1 BGC O1 "Carbohydrate core" 8 GBH O2 BGC O2 "Carbohydrate core" 9 GBH O3 BGC O3 "Carbohydrate core" 10 GBH O4 BGC O4 "Carbohydrate core" 11 GBH O5 BGC O5 "Carbohydrate core" 12 GBH O6 BGC O6 "Carbohydrate core" 13 GBH H1 BGC H1 "Carbohydrate core" 14 GBH H2 BGC H2 "Carbohydrate core" 15 GBH H3 BGC H3 "Carbohydrate core" 16 GBH H4 BGC H4 "Carbohydrate core" 17 GBH H5 BGC H5 "Carbohydrate core" 18 GBH H61 BGC H61 "Carbohydrate core" 19 GBH H62 BGC H62 "Carbohydrate core" 20 GBH HO2 BGC HO2 "Carbohydrate core" 21 GBH HO3 BGC HO3 "Carbohydrate core" 22 GBH HO4 BGC HO4 "Carbohydrate core" 23 GBH HO6 BGC HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GBH "CARBOHYDRATE ISOMER" D PDB ? GBH "CARBOHYDRATE RING" pyranose PDB ? GBH "CARBOHYDRATE ANOMER" beta PDB ? GBH "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GBH "Create component" 2011-10-20 PDBJ GBH "Other modification" 2020-07-03 RCSB GBH "Modify parent residue" 2020-07-17 RCSB GBH "Modify synonyms" 2020-07-17 RCSB GBH "Modify internal type" 2020-07-17 RCSB GBH "Modify linking type" 2020-07-17 RCSB GBH "Modify atom id" 2020-07-17 RCSB GBH "Modify component atom id" 2020-07-17 RCSB GBH "Modify leaving atom flag" 2020-07-17 RCSB ##