data_GBM
#
_chem_comp.id GBM
_chem_comp.name "5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H28 Cl N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Glibenclamide; Glyburide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-04-03
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 494.004
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GBM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YVP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GBM O3 O1 O 0 1 N N N -52.101 -6.447 42.294 4.821 0.201 -0.816 O3 GBM 1
GBM O4 O2 O 0 1 N N N -49.747 -4.996 45.457 3.931 3.694 1.270 O4 GBM 2
GBM O5 O3 O 0 1 N N N -48.017 -4.488 43.763 4.281 2.836 -1.051 O5 GBM 3
GBM O6 O4 O 0 1 N N N -52.991 1.840 40.420 -4.766 1.761 -0.668 O6 GBM 4
GBM CL1 CL1 CL 0 0 N N N -54.301 5.888 37.473 -7.474 -3.681 0.918 CL1 GBM 5
GBM S2 S1 S 0 1 N N N -49.395 -4.554 44.143 4.002 2.633 0.327 S2 GBM 6
GBM O7 O5 O 0 1 N N N -56.204 3.422 42.430 -7.236 1.838 -1.067 O7 GBM 7
GBM N8 N1 N 0 1 N N N -52.096 -5.259 44.267 6.363 -0.400 0.666 N8 GBM 8
GBM N9 N2 N 0 1 N N N -50.147 -5.538 43.065 5.155 1.585 0.889 N9 GBM 9
GBM N10 N3 N 0 1 N N N -54.220 1.769 42.296 -3.694 -0.006 0.145 N10 GBM 10
GBM C11 C1 C 0 1 N N N -53.508 -5.354 44.646 6.656 -1.630 -0.073 C11 GBM 11
GBM C12 C2 C 0 1 N N N -54.138 -6.676 44.236 7.233 -2.675 0.885 C12 GBM 12
GBM C13 C3 C 0 1 N N N -54.295 -4.183 44.092 7.674 -1.333 -1.176 C13 GBM 13
GBM C14 C4 C 0 1 N N N -55.616 -6.502 43.892 7.539 -3.960 0.113 C14 GBM 14
GBM C15 C5 C 0 1 N N N -55.698 -4.133 44.686 7.980 -2.618 -1.947 C15 GBM 15
GBM C16 C6 C 0 1 N N N -56.287 -5.525 44.837 8.556 -3.663 -0.990 C16 GBM 16
GBM C17 C7 C 0 1 N N N -51.507 -5.813 43.162 5.424 0.453 0.209 C17 GBM 17
GBM C18 C8 C 0 1 Y N N -50.121 -2.971 43.884 2.454 1.796 0.404 C18 GBM 18
GBM C19 C9 C 0 1 Y N N -51.460 -0.566 43.498 0.024 0.481 0.524 C19 GBM 19
GBM C20 C10 C 0 1 N N N -52.200 0.736 43.286 -1.300 -0.235 0.589 C20 GBM 20
GBM C21 C11 C 0 1 Y N N -50.510 -2.597 42.610 2.016 1.051 -0.676 C21 GBM 21
GBM C22 C12 C 0 1 Y N N -50.377 -2.146 44.966 1.679 1.878 1.546 C22 GBM 22
GBM C23 C13 C 0 1 Y N N -51.181 -1.401 42.429 0.802 0.394 -0.616 C23 GBM 23
GBM C24 C14 C 0 1 Y N N -51.048 -0.952 44.764 0.464 1.221 1.606 C24 GBM 24
GBM C25 C15 C 0 1 N N N -53.617 0.534 42.781 -2.407 0.691 0.081 C25 GBM 25
GBM C26 C16 C 0 1 N N N -53.896 2.298 41.113 -4.819 0.619 -0.255 C26 GBM 26
GBM C27 C17 C 0 1 Y N N -54.691 3.475 40.637 -6.115 -0.083 -0.190 C27 GBM 27
GBM C28 C18 C 0 1 Y N N -55.814 4.025 41.266 -7.288 0.563 -0.605 C28 GBM 28
GBM C29 C19 C 0 1 Y N N -54.245 4.056 39.449 -6.180 -1.397 0.279 C29 GBM 29
GBM C30 C20 C 0 1 Y N N -56.469 5.118 40.721 -8.501 -0.106 -0.541 C30 GBM 30
GBM C31 C21 C 0 1 Y N N -54.904 5.150 38.930 -7.394 -2.048 0.336 C31 GBM 31
GBM C32 C22 C 0 1 Y N N -56.011 5.685 39.546 -8.552 -1.403 -0.071 C32 GBM 32
GBM C33 C23 C 0 1 N N N -57.339 3.966 43.101 -8.471 2.432 -1.472 C33 GBM 33
GBM H1 H1 H 0 1 N N N -51.502 -4.736 44.878 6.844 -0.199 1.484 H1 GBM 34
GBM H2 H2 H 0 1 N N N -49.616 -5.948 42.323 5.636 1.786 1.707 H2 GBM 35
GBM H3 H3 H 0 1 N N N -54.897 2.235 42.866 -3.736 -0.917 0.475 H3 GBM 36
GBM H4 H4 H 0 1 N N N -53.566 -5.294 45.743 5.738 -2.014 -0.519 H4 GBM 37
GBM H5 H5 H 0 1 N N N -54.045 -7.391 45.067 8.150 -2.292 1.331 H5 GBM 38
GBM H6 H6 H 0 1 N N N -53.608 -7.068 43.355 6.507 -2.887 1.671 H6 GBM 39
GBM H7 H7 H 0 1 N N N -53.768 -3.249 44.336 7.263 -0.589 -1.858 H7 GBM 40
GBM H8 H8 H 0 1 N N N -54.371 -4.286 43.000 8.591 -0.949 -0.730 H8 GBM 41
GBM H9 H9 H 0 1 N N N -55.703 -6.123 42.863 7.950 -4.704 0.796 H9 GBM 42
GBM H10 H10 H 0 1 N N N -56.119 -7.477 43.967 6.621 -4.344 -0.333 H10 GBM 43
GBM H11 H11 H 0 1 N N N -55.651 -3.655 45.676 7.062 -3.001 -2.393 H11 GBM 44
GBM H12 H12 H 0 1 N N N -56.346 -3.540 44.024 8.705 -2.406 -2.733 H12 GBM 45
GBM H13 H13 H 0 1 N N N -57.363 -5.487 44.611 9.474 -3.279 -0.544 H13 GBM 46
GBM H14 H14 H 0 1 N N N -56.141 -5.867 45.872 8.775 -4.578 -1.539 H14 GBM 47
GBM H15 H15 H 0 1 N N N -51.647 1.338 42.550 -1.260 -1.130 -0.033 H15 GBM 48
GBM H16 H16 H 0 1 N N N -52.242 1.276 44.244 -1.508 -0.519 1.621 H16 GBM 49
GBM H17 H17 H 0 1 N N N -50.292 -3.233 41.765 2.624 0.983 -1.566 H17 GBM 50
GBM H18 H18 H 0 1 N N N -50.057 -2.431 45.957 2.022 2.456 2.391 H18 GBM 51
GBM H19 H19 H 0 1 N N N -51.493 -1.113 41.436 0.460 -0.187 -1.459 H19 GBM 52
GBM H20 H20 H 0 1 N N N -51.254 -0.310 45.608 -0.143 1.289 2.496 H20 GBM 53
GBM H21 H21 H 0 1 N N N -54.232 0.141 43.604 -2.198 0.975 -0.950 H21 GBM 54
GBM H22 H22 H 0 1 N N N -53.597 -0.195 41.958 -2.447 1.585 0.703 H22 GBM 55
GBM H23 H23 H 0 1 N N N -53.385 3.649 38.937 -5.280 -1.903 0.596 H23 GBM 56
GBM H24 H24 H 0 1 N N N -57.338 5.527 41.215 -9.407 0.389 -0.859 H24 GBM 57
GBM H25 H25 H 0 1 N N N -56.516 6.538 39.117 -9.500 -1.919 -0.023 H25 GBM 58
GBM H26 H26 H 0 1 N N N -57.538 3.387 44.015 -8.909 1.845 -2.279 H26 GBM 59
GBM H27 H27 H 0 1 N N N -57.140 5.014 43.367 -9.158 2.454 -0.625 H27 GBM 60
GBM H28 H28 H 0 1 N N N -58.215 3.916 42.438 -8.289 3.449 -1.819 H28 GBM 61
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GBM CL1 C31 SING N N 1
GBM C31 C29 DOUB Y N 2
GBM C31 C32 SING Y N 3
GBM C29 C27 SING Y N 4
GBM C32 C30 DOUB Y N 5
GBM O6 C26 DOUB N N 6
GBM C27 C26 SING N N 7
GBM C27 C28 DOUB Y N 8
GBM C30 C28 SING Y N 9
GBM C26 N10 SING N N 10
GBM C28 O7 SING N N 11
GBM O3 C17 DOUB N N 12
GBM N10 C25 SING N N 13
GBM C23 C21 DOUB Y N 14
GBM C23 C19 SING Y N 15
GBM O7 C33 SING N N 16
GBM C21 C18 SING Y N 17
GBM C25 C20 SING N N 18
GBM N9 C17 SING N N 19
GBM N9 S2 SING N N 20
GBM C17 N8 SING N N 21
GBM C20 C19 SING N N 22
GBM C19 C24 DOUB Y N 23
GBM O5 S2 DOUB N N 24
GBM C18 S2 SING N N 25
GBM C18 C22 DOUB Y N 26
GBM C14 C12 SING N N 27
GBM C14 C16 SING N N 28
GBM C13 C11 SING N N 29
GBM C13 C15 SING N N 30
GBM S2 O4 DOUB N N 31
GBM C12 C11 SING N N 32
GBM N8 C11 SING N N 33
GBM C15 C16 SING N N 34
GBM C24 C22 SING Y N 35
GBM N8 H1 SING N N 36
GBM N9 H2 SING N N 37
GBM N10 H3 SING N N 38
GBM C11 H4 SING N N 39
GBM C12 H5 SING N N 40
GBM C12 H6 SING N N 41
GBM C13 H7 SING N N 42
GBM C13 H8 SING N N 43
GBM C14 H9 SING N N 44
GBM C14 H10 SING N N 45
GBM C15 H11 SING N N 46
GBM C15 H12 SING N N 47
GBM C16 H13 SING N N 48
GBM C16 H14 SING N N 49
GBM C20 H15 SING N N 50
GBM C20 H16 SING N N 51
GBM C21 H17 SING N N 52
GBM C22 H18 SING N N 53
GBM C23 H19 SING N N 54
GBM C24 H20 SING N N 55
GBM C25 H21 SING N N 56
GBM C25 H22 SING N N 57
GBM C29 H23 SING N N 58
GBM C30 H24 SING N N 59
GBM C32 H25 SING N N 60
GBM C33 H26 SING N N 61
GBM C33 H27 SING N N 62
GBM C33 H28 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GBM SMILES ACDLabs 12.01 "O=C(NC1CCCCC1)NS(=O)(=O)c3ccc(CCNC(=O)c2c(OC)ccc(Cl)c2)cc3"
GBM InChI InChI 1.03 "InChI=1S/C23H28ClN3O5S/c1-32-21-12-9-17(24)15-20(21)22(28)25-14-13-16-7-10-19(11-8-16)33(30,31)27-23(29)26-18-5-3-2-4-6-18/h7-12,15,18H,2-6,13-14H2,1H3,(H,25,28)(H2,26,27,29)"
GBM InChIKey InChI 1.03 ZNNLBTZKUZBEKO-UHFFFAOYSA-N
GBM SMILES_CANONICAL CACTVS 3.385 "COc1ccc(Cl)cc1C(=O)NCCc2ccc(cc2)[S](=O)(=O)NC(=O)NC3CCCCC3"
GBM SMILES CACTVS 3.385 "COc1ccc(Cl)cc1C(=O)NCCc2ccc(cc2)[S](=O)(=O)NC(=O)NC3CCCCC3"
GBM SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "COc1ccc(cc1C(=O)NCCc2ccc(cc2)S(=O)(=O)NC(=O)NC3CCCCC3)Cl"
GBM SMILES "OpenEye OEToolkits" 1.9.2 "COc1ccc(cc1C(=O)NCCc2ccc(cc2)S(=O)(=O)NC(=O)NC3CCCCC3)Cl"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GBM "SYSTEMATIC NAME" ACDLabs 12.01 "5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide"
GBM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-chloranyl-N-[2-[4-(cyclohexylcarbamoylsulfamoyl)phenyl]ethyl]-2-methoxy-benzamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GBM "Create component" 2015-04-03 PDBJ
GBM "Initial release" 2015-11-25 RCSB
GBM "Modify synonyms" 2016-03-28 RCSB
GBM "Modify synonyms" 2021-03-13 RCSB
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 GBM Glibenclamide PDB ?
2 GBM Glyburide PDB ?
##