data_GBX # _chem_comp.id GBX _chem_comp.name "2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H27 N3 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "GLUTATHIONE CONJUGATE OF (+)-ANTI-BPDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.615 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GBX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GBX O2 O2 O 0 1 N N N 18.103 13.633 12.367 -2.382 3.051 3.138 O2 GBX 1 GBX C1 C1 C 0 1 N N N 21.809 7.492 14.934 5.147 -0.340 5.785 C1 GBX 2 GBX C2 C2 C 0 1 N N N 17.891 12.987 11.342 -1.992 1.902 3.137 C2 GBX 3 GBX C3 C3 C 0 1 N N N 19.057 15.290 8.798 -3.760 0.327 5.977 C3 GBX 4 GBX N1 N1 N 0 1 N N N 23.319 6.807 13.037 3.155 -1.690 6.120 N1 GBX 5 GBX C7 C7 C 0 1 N N N 15.908 10.517 7.977 -1.045 -3.027 -2.114 C7 GBX 6 GBX N2 N2 N 0 1 N N N 18.769 10.944 12.265 -0.169 0.374 2.659 N2 GBX 7 GBX N3 N3 N 0 1 N N N 17.820 13.535 10.129 -2.448 1.035 4.062 N3 GBX 8 GBX CA1 CA1 C 0 1 N N S 22.431 7.882 13.589 3.931 -0.938 5.126 CA1 GBX 9 GBX O11 O11 O 0 1 N N N 21.579 8.349 15.784 5.112 -0.034 6.953 O11 GBX 10 GBX O12 O12 O 0 1 N N N 21.552 6.288 15.105 6.269 -0.147 5.074 O12 GBX 11 GBX CB1 CB1 C 0 1 N N N 21.330 8.242 12.594 3.065 0.180 4.543 CB1 GBX 12 GBX CG1 CG1 C 0 1 N N N 20.639 9.566 12.914 1.830 -0.426 3.874 CG1 GBX 13 GBX CD1 CD1 C 0 1 N N N 19.592 9.966 11.890 0.977 0.675 3.300 CD1 GBX 14 GBX OE1 OE1 O 0 1 N N N 19.528 9.403 10.788 1.323 1.831 3.415 OE1 GBX 15 GBX CA2 CA2 C 0 1 N N R 17.702 11.480 11.419 -0.998 1.445 2.101 CA2 GBX 16 GBX CB2 CB2 C 0 1 N N N 16.316 11.169 12.000 -1.746 0.924 0.872 CB2 GBX 17 GBX SG2 SG2 S 0 1 N N N 15.908 9.406 12.153 -0.549 0.373 -0.374 SG2 GBX 18 GBX CA3 CA3 C 0 1 N N N 17.976 14.968 9.844 -3.415 1.479 5.070 CA3 GBX 19 GBX O31 O31 O 0 1 N N N 19.239 16.456 8.438 -3.251 -0.754 5.801 O31 GBX 20 GBX O32 O32 O 0 1 N N N 19.729 14.345 8.319 -4.633 0.502 6.982 O32 GBX 21 GBX O7 O7 O 0 1 N N N 16.877 11.247 8.274 -0.876 -4.213 -2.313 O7 GBX 22 GBX C8 C8 C 0 1 N N N 16.185 9.260 8.014 -1.760 -2.516 -0.894 C8 GBX 23 GBX O8 O8 O 0 1 N N N 15.293 8.607 7.440 -1.679 -3.059 0.181 O8 GBX 24 GBX C9 C9 C 0 1 N N S 16.437 8.688 9.481 -2.592 -1.265 -1.117 C9 GBX 25 GBX O9 O9 O 0 1 N N N 16.700 7.273 9.432 -3.643 -1.540 -2.045 O9 GBX 26 GBX C10 C10 C 0 1 N N S 15.235 8.941 10.478 -1.684 -0.175 -1.679 C10 GBX 27 GBX "C1'" "C1'" C 0 1 Y N N 13.816 11.940 8.348 0.212 -2.398 -4.156 "C1'" GBX 28 GBX "C2'" "C2'" C 0 1 Y N N 14.644 10.833 8.766 -0.560 -1.993 -3.062 "C2'" GBX 29 GBX "C3'" "C3'" C 0 1 Y N N 14.299 10.059 9.956 -0.879 -0.653 -2.855 "C3'" GBX 30 GBX "C4'" "C4'" C 0 1 Y N N 12.573 9.475 11.713 -0.746 1.719 -3.599 "C4'" GBX 31 GBX "C5'" "C5'" C 0 1 Y N N 11.307 9.716 12.340 -0.290 2.630 -4.487 "C5'" GBX 32 GBX "C6'" "C6'" C 0 1 Y N N 9.249 11.087 12.548 0.971 3.182 -6.510 "C6'" GBX 33 GBX "C7'" "C7'" C 0 1 Y N N 8.461 12.211 12.125 1.738 2.786 -7.587 "C7'" GBX 34 GBX "C8'" "C8'" C 0 1 Y N N 8.902 13.064 11.071 2.058 1.457 -7.790 "C8'" GBX 35 GBX "C9'" "C9'" C 0 1 Y N N 10.583 13.649 9.341 1.931 -0.927 -7.095 "C9'" GBX 36 GBX C9A C9A C 0 1 Y N N 11.813 13.370 8.655 1.487 -1.858 -6.221 C9A GBX 37 GBX C11 C11 C 0 1 Y N N 12.625 12.247 9.051 0.678 -1.459 -5.072 C11 GBX 38 GBX C12 C12 C 0 1 Y N N 12.212 11.418 10.181 0.357 -0.094 -4.880 C12 GBX 39 GBX C13 C13 C 0 1 Y N N 13.049 10.333 10.643 -0.427 0.304 -3.774 C13 GBX 40 GBX C16 C16 C 0 1 Y N N 10.503 10.818 11.916 0.498 2.236 -5.595 C16 GBX 41 GBX C17 C17 C 0 1 Y N N 10.957 11.676 10.828 0.819 0.873 -5.789 C17 GBX 42 GBX C18 C18 C 0 1 Y N N 10.142 12.804 10.405 1.605 0.482 -6.899 C18 GBX 43 GBX HN11 1HN1 H 0 0 N N N 23.733 7.066 12.141 2.888 -1.033 6.838 HN11 GBX 44 GBX HN12 2HN1 H 0 0 N N N 22.822 5.918 12.968 2.304 -1.983 5.664 HN12 GBX 45 GBX HN2 HN2 H 0 1 N N N 18.957 11.285 13.207 -0.445 -0.550 2.567 HN2 GBX 46 GBX HN3 HN3 H 0 1 N N N 17.642 12.841 9.402 -2.137 0.116 4.061 HN3 GBX 47 GBX HA1 HA1 H 0 1 N N N 23.078 8.773 13.760 4.244 -1.609 4.326 HA1 GBX 48 GBX H12 H12 H 0 1 N N N 21.166 6.046 15.938 7.050 0.236 5.497 H12 GBX 49 GBX HB11 1HB1 H 0 0 N N N 21.722 8.241 11.550 2.752 0.851 5.343 HB11 GBX 50 GBX HB12 2HB1 H 0 0 N N N 20.585 7.416 12.510 3.641 0.738 3.805 HB12 GBX 51 GBX HG11 1HG1 H 0 0 N N N 20.200 9.544 13.939 2.144 -1.097 3.074 HG11 GBX 52 GBX HG12 2HG1 H 0 0 N N N 21.389 10.379 13.050 1.255 -0.985 4.612 HG12 GBX 53 GBX HA2 HA2 H 0 1 N N N 17.757 11.009 10.409 -0.364 2.283 1.812 HA2 GBX 54 GBX HB21 1HB2 H 0 0 N N N 16.193 11.675 12.985 -2.380 0.086 1.161 HB21 GBX 55 GBX HB22 2HB2 H 0 0 N N N 15.528 11.692 11.409 -2.363 1.721 0.457 HB22 GBX 56 GBX HA31 1HA3 H 0 0 N N N 18.163 15.534 10.785 -2.981 2.288 5.658 HA31 GBX 57 GBX HA32 2HA3 H 0 0 N N N 16.999 15.414 9.545 -4.318 1.835 4.574 HA32 GBX 58 GBX H32 H32 H 0 1 N N N 20.396 14.543 7.673 -4.855 -0.237 7.564 H32 GBX 59 GBX H9 H9 H 0 1 N N N 17.320 9.245 9.870 -3.017 -0.934 -0.169 H9 GBX 60 GBX HO9 HO9 H 0 1 N N N 16.850 6.932 10.306 -4.190 -2.233 -1.649 HO9 GBX 61 GBX H10 H10 H 0 1 N N N 14.637 8.002 10.557 -2.298 0.668 -1.991 H10 GBX 62 GBX "H1'" "H1'" H 0 1 N N N 14.097 12.559 7.479 0.449 -3.443 -4.289 "H1'" GBX 63 GBX "H4'" "H4'" H 0 1 N N N 13.184 8.623 12.056 -1.345 2.037 -2.758 "H4'" GBX 64 GBX "H5'" "H5'" H 0 1 N N N 10.951 9.054 13.147 -0.532 3.674 -4.350 "H5'" GBX 65 GBX "H6'" "H6'" H 0 1 N N N 8.891 10.430 13.358 0.734 4.227 -6.374 "H6'" GBX 66 GBX "H7'" "H7'" H 0 1 N N N 7.498 12.423 12.619 2.096 3.529 -8.284 "H7'" GBX 67 GBX "H8'" "H8'" H 0 1 N N N 8.283 13.926 10.770 2.660 1.172 -8.640 "H8'" GBX 68 GBX "H9'" "H9'" H 0 1 N N N 9.972 14.519 9.048 2.529 -1.227 -7.943 "H9'" GBX 69 GBX H9A H9A H 0 1 N N N 12.134 14.019 7.823 1.732 -2.899 -6.372 H9A GBX 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GBX O2 C2 DOUB N N 1 GBX C1 CA1 SING N N 2 GBX C1 O11 DOUB N N 3 GBX C1 O12 SING N N 4 GBX C2 N3 SING N N 5 GBX C2 CA2 SING N N 6 GBX C3 CA3 SING N N 7 GBX C3 O31 DOUB N N 8 GBX C3 O32 SING N N 9 GBX N1 CA1 SING N N 10 GBX N1 HN11 SING N N 11 GBX N1 HN12 SING N N 12 GBX C7 O7 DOUB N N 13 GBX C7 C8 SING N N 14 GBX C7 "C2'" SING N N 15 GBX N2 CD1 SING N N 16 GBX N2 CA2 SING N N 17 GBX N2 HN2 SING N N 18 GBX N3 CA3 SING N N 19 GBX N3 HN3 SING N N 20 GBX CA1 CB1 SING N N 21 GBX CA1 HA1 SING N N 22 GBX O12 H12 SING N N 23 GBX CB1 CG1 SING N N 24 GBX CB1 HB11 SING N N 25 GBX CB1 HB12 SING N N 26 GBX CG1 CD1 SING N N 27 GBX CG1 HG11 SING N N 28 GBX CG1 HG12 SING N N 29 GBX CD1 OE1 DOUB N N 30 GBX CA2 CB2 SING N N 31 GBX CA2 HA2 SING N N 32 GBX CB2 SG2 SING N N 33 GBX CB2 HB21 SING N N 34 GBX CB2 HB22 SING N N 35 GBX SG2 C10 SING N N 36 GBX CA3 HA31 SING N N 37 GBX CA3 HA32 SING N N 38 GBX O32 H32 SING N N 39 GBX C8 O8 DOUB N N 40 GBX C8 C9 SING N N 41 GBX C9 O9 SING N N 42 GBX C9 C10 SING N N 43 GBX C9 H9 SING N N 44 GBX O9 HO9 SING N N 45 GBX C10 "C3'" SING N N 46 GBX C10 H10 SING N N 47 GBX "C1'" "C2'" SING Y N 48 GBX "C1'" C11 DOUB Y N 49 GBX "C1'" "H1'" SING N N 50 GBX "C2'" "C3'" DOUB Y N 51 GBX "C3'" C13 SING Y N 52 GBX "C4'" "C5'" DOUB Y N 53 GBX "C4'" C13 SING Y N 54 GBX "C4'" "H4'" SING N N 55 GBX "C5'" C16 SING Y N 56 GBX "C5'" "H5'" SING N N 57 GBX "C6'" "C7'" DOUB Y N 58 GBX "C6'" C16 SING Y N 59 GBX "C6'" "H6'" SING N N 60 GBX "C7'" "C8'" SING Y N 61 GBX "C7'" "H7'" SING N N 62 GBX "C8'" C18 DOUB Y N 63 GBX "C8'" "H8'" SING N N 64 GBX "C9'" C9A DOUB Y N 65 GBX "C9'" C18 SING Y N 66 GBX "C9'" "H9'" SING N N 67 GBX C9A C11 SING Y N 68 GBX C9A H9A SING N N 69 GBX C11 C12 SING Y N 70 GBX C12 C13 DOUB Y N 71 GBX C12 C17 SING Y N 72 GBX C16 C17 DOUB Y N 73 GBX C17 C18 SING Y N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GBX SMILES ACDLabs 10.04 "O=C(O)C(N)CCC(=O)NC(C(=O)NCC(=O)O)CSC3c2c1ccc5c4c1c(cc2C(=O)C(=O)C3O)ccc4ccc5" GBX SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCC(=O)N[C@@H](CS[C@@H]1[C@@H](O)C(=O)C(=O)c2cc3ccc4cccc5ccc(c12)c3c45)C(=O)NCC(O)=O)C(O)=O" GBX SMILES CACTVS 3.341 "N[CH](CCC(=O)N[CH](CS[CH]1[CH](O)C(=O)C(=O)c2cc3ccc4cccc5ccc(c12)c3c45)C(=O)NCC(O)=O)C(O)=O" GBX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2ccc3cc4c(c5c3c2c(c1)cc5)[C@@H]([C@H](C(=O)C4=O)O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N" GBX SMILES "OpenEye OEToolkits" 1.5.0 "c1cc2ccc3cc4c(c5c3c2c(c1)cc5)C(C(C(=O)C4=O)O)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" GBX InChI InChI 1.03 "InChI=1S/C30H27N3O9S/c31-18(30(41)42)8-9-20(34)33-19(29(40)32-11-21(35)36)12-43-28-24-16-7-6-14-3-1-2-13-4-5-15(23(16)22(13)14)10-17(24)25(37)26(38)27(28)39/h1-7,10,18-19,27-28,39H,8-9,11-12,31H2,(H,32,40)(H,33,34)(H,35,36)(H,41,42)/t18-,19-,27-,28-/m0/s1" GBX InChIKey InChI 1.03 DUWOHLGCRJLRRU-HVYZTVOGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GBX "SYSTEMATIC NAME" ACDLabs 10.04 "L-gamma-glutamyl-S-[(9S,10S)-9-hydroxy-7,8-dioxo-7,8,9,10-tetrahydrobenzo[pqr]tetraphen-10-yl]-L-cysteinylglycine" GBX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-[[(2R)-1-(carboxymethylamino)-3-[[(9S,10S)-9-hydroxy-7,8-dioxo-9,10-dihydrobenzo[a]pyren-10-yl]sulfanyl]-1-oxo-propan-2-yl]amino]-5-oxo-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GBX "Create component" 1999-07-08 RCSB GBX "Modify descriptor" 2011-06-04 RCSB GBX "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GBX _pdbx_chem_comp_synonyms.name "GLUTATHIONE CONJUGATE OF (+)-ANTI-BPDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##