data_GC4 # _chem_comp.id GC4 _chem_comp.name "4-deoxy-beta-D-glucopyranuronic acid" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-DEOXY-D-GLUCURONIC ACID; 4-deoxy-beta-D-glucuronic acid; 4-deoxy-glucuronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-11-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.140 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GC4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DBO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GC4 "4-DEOXY-D-GLUCURONIC ACID" PDB ? 2 GC4 "4-deoxy-beta-D-glucuronic acid" PDB ? 3 GC4 "4-deoxy-glucuronic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GC4 C1 C1 C 0 1 N N R 26.636 22.832 -2.431 -1.174 -0.327 -0.978 C1 GC4 1 GC4 C2 C2 C 0 1 N N R 25.773 23.331 -3.603 0.015 0.233 -1.759 C2 GC4 2 GC4 C3 C3 C 0 1 N N S 25.724 24.877 -3.621 1.314 -0.219 -1.082 C3 GC4 3 GC4 C4 C4 C 0 1 N N N 27.089 25.531 -3.274 1.260 0.169 0.399 C4 GC4 4 GC4 C5 C5 C 0 1 N N S 28.242 24.668 -2.751 -0.024 -0.389 1.014 C5 GC4 5 GC4 O5 O5 O 0 1 N N N 27.985 23.254 -2.629 -1.158 0.172 0.357 O5 GC4 6 GC4 C6 C6 C 0 1 N N N 29.548 25.317 -2.314 -0.071 -0.038 2.479 C6 GC4 7 GC4 O6A O6A O 0 1 N N N 29.695 26.552 -2.462 -0.981 0.628 2.912 O6A GC4 8 GC4 O6B O6B O 0 1 N N N 30.400 24.599 -1.751 0.897 -0.467 3.303 O6B GC4 9 GC4 O2 O2 O 0 1 N N N 26.297 22.861 -4.838 -0.024 -0.250 -3.103 O2 GC4 10 GC4 O3 O3 O 0 1 N N N 24.953 25.336 -2.509 2.429 0.421 -1.706 O3 GC4 11 GC4 O1 O1 O 0 1 N Y N 26.494 24.310 1.377 -2.389 0.066 -1.618 O1 GC4 12 GC4 H1 H1 H 0 1 N N N 26.262 21.782 -2.464 -1.112 -1.415 -0.958 H1 GC4 13 GC4 H2 H2 H 0 1 N N N 24.739 22.934 -3.466 -0.029 1.322 -1.762 H2 GC4 14 GC4 H3 H3 H 0 1 N N N 25.351 25.135 -4.639 1.417 -1.300 -1.173 H3 GC4 15 GC4 H4 H41 H 0 1 N N N 27.447 26.093 -4.167 2.124 -0.246 0.917 H4 GC4 16 GC4 H42 H42 H 0 1 N N N 26.909 26.357 -2.547 1.266 1.255 0.491 H42 GC4 17 GC4 H5 H5 H 0 1 N N N 29.264 24.539 -3.176 -0.038 -1.473 0.900 H5 GC4 18 GC4 HO6B HOB H 0 0 N N N 31.214 25.004 -1.478 0.867 -0.242 4.243 HO6B GC4 19 GC4 HO2 HO2 H 0 1 N Y N 25.764 23.169 -5.561 -0.858 0.054 -3.485 HO2 GC4 20 GC4 HO3 HO3 H 0 1 N Y N 24.922 26.285 -2.520 3.222 0.113 -1.246 HO3 GC4 21 GC4 HO1 HO1 H 0 1 N Y N 27.026 24.001 2.100 -3.114 -0.311 -1.101 HO1 GC4 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GC4 C1 C2 SING N N 1 GC4 C1 O5 SING N N 2 GC4 C1 O1 SING N N 3 GC4 C1 H1 SING N N 4 GC4 C2 C3 SING N N 5 GC4 C2 O2 SING N N 6 GC4 C2 H2 SING N N 7 GC4 C3 C4 SING N N 8 GC4 C3 O3 SING N N 9 GC4 C3 H3 SING N N 10 GC4 C4 C5 SING N N 11 GC4 C4 H4 SING N N 12 GC4 C4 H42 SING N N 13 GC4 C5 O5 SING N N 14 GC4 C5 C6 SING N N 15 GC4 C5 H5 SING N N 16 GC4 C6 O6A DOUB N N 17 GC4 C6 O6B SING N N 18 GC4 O6B HO6B SING N N 19 GC4 O2 HO2 SING N N 20 GC4 O3 HO3 SING N N 21 GC4 O1 HO1 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GC4 SMILES ACDLabs 10.04 "O=C(O)C1OC(O)C(O)C(O)C1" GC4 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@H](O[C@@H](O)[C@@H]1O)C(O)=O" GC4 SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH](O)[CH]1O)C(O)=O" GC4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H](OC1C(=O)O)O)O)O" GC4 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(OC1C(=O)O)O)O)O" GC4 InChI InChI 1.03 "InChI=1S/C6H10O6/c7-2-1-3(5(9)10)12-6(11)4(2)8/h2-4,6-8,11H,1H2,(H,9,10)/t2-,3-,4+,6+/m0/s1" GC4 InChIKey InChI 1.03 OGDYCNQXUUBOMI-RFPGKLGKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GC4 "SYSTEMATIC NAME" ACDLabs 10.04 "4-deoxy-beta-D-xylo-hexopyranuronic acid" GC4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S,5R,6R)-4,5,6-trihydroxyoxane-2-carboxylic acid" GC4 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-4-deoxy-GlcpA # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GC4 "CARBOHYDRATE ISOMER" D PDB ? GC4 "CARBOHYDRATE RING" pyranose PDB ? GC4 "CARBOHYDRATE ANOMER" beta PDB ? GC4 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GC4 "Create component" 1999-11-08 RCSB GC4 "Modify descriptor" 2011-06-04 RCSB GC4 "Other modification" 2020-07-03 RCSB GC4 "Modify name" 2020-07-17 RCSB GC4 "Modify synonyms" 2020-07-17 RCSB GC4 "Modify linking type" 2020-07-17 RCSB GC4 "Modify atom id" 2020-07-17 RCSB GC4 "Modify component atom id" 2020-07-17 RCSB GC4 "Modify leaving atom flag" 2020-07-17 RCSB ##