data_GC5 # _chem_comp.id GC5 _chem_comp.name "S-[2-[3-[[(2R)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (Z)-hex-2-enethioate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H31 N2 O8 P S" _chem_comp.mon_nstd_parent_comp_id PNS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-28 _chem_comp.pdbx_modified_date 2023-03-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QV0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GC5 C4 C1 C 0 1 N N N 4.341 -11.699 19.960 -10.895 -0.298 -1.561 C4 GC5 1 GC5 C5 C2 C 0 1 N N N 4.440 -12.802 18.934 -10.775 -1.116 -2.849 C5 GC5 2 GC5 C10 C3 C 0 1 N N N 1.566 -9.254 20.005 -7.367 0.877 0.379 C10 GC5 3 GC5 C28 C4 C 0 1 N N N -7.824 -10.376 13.751 5.710 -0.232 -0.166 C28 GC5 4 GC5 C1 C5 C 0 1 N N N 2.836 -8.678 20.590 -8.703 1.328 0.797 C1 GC5 5 GC5 C2 C6 C 0 1 N N N 4.038 -9.228 20.313 -9.718 1.287 -0.062 C2 GC5 6 GC5 C3 C7 C 0 1 N N N 4.217 -10.344 19.311 -9.599 0.482 -1.330 C3 GC5 7 GC5 O1 O1 O 0 1 N N N 1.228 -10.426 20.307 -7.159 0.587 -0.785 O1 GC5 8 GC5 O23 O2 O 0 1 N N N -9.101 -13.751 12.494 5.673 2.949 0.633 O23 GC5 9 GC5 P24 P1 P 0 1 N N N -8.952 -12.262 12.317 6.799 2.207 -0.247 P24 GC5 10 GC5 O26 O3 O 0 1 N N N -8.326 -11.739 11.051 7.931 1.820 0.625 O26 GC5 11 GC5 O27 O4 O 0 1 N N N -8.008 -11.766 13.517 6.169 0.889 -0.924 O27 GC5 12 GC5 C29 C8 C 0 1 N N N -6.411 -10.108 14.246 5.174 -1.305 -1.116 C29 GC5 13 GC5 C30 C9 C 0 1 N N N -6.388 -10.217 15.761 4.013 -0.730 -1.931 C30 GC5 14 GC5 C31 C10 C 0 1 N N N -5.434 -11.106 13.648 6.290 -1.751 -2.063 C31 GC5 15 GC5 C32 C11 C 0 1 N N R -6.065 -8.698 13.771 4.682 -2.505 -0.305 C32 GC5 16 GC5 O33 O5 O 0 1 N N N -6.987 -7.771 14.350 5.755 -3.013 0.491 O33 GC5 17 GC5 C34 C12 C 0 1 N N N -4.656 -8.279 14.086 3.550 -2.076 0.592 C34 GC5 18 GC5 O35 O6 O 0 1 N N N -3.801 -8.336 13.223 3.738 -1.938 1.782 O35 GC5 19 GC5 N36 N1 N 0 1 N N N -4.385 -7.832 15.304 2.329 -1.845 0.071 N36 GC5 20 GC5 C37 C13 C 0 1 N N N -3.355 -6.839 15.496 1.242 -1.374 0.934 C37 GC5 21 GC5 C38 C14 C 0 1 N N N -2.294 -7.291 16.490 -0.028 -1.192 0.101 C38 GC5 22 GC5 C39 C15 C 0 1 N N N -1.252 -6.207 16.557 -1.146 -0.707 0.988 C39 GC5 23 GC5 O40 O7 O 0 1 N N N -1.062 -5.494 15.592 -0.946 -0.525 2.170 O40 GC5 24 GC5 N41 N2 N 0 1 N N N -0.585 -6.072 17.696 -2.368 -0.477 0.467 N41 GC5 25 GC5 C42 C16 C 0 1 N N N 0.846 -5.850 17.718 -3.454 -0.005 1.330 C42 GC5 26 GC5 C43 C17 C 0 1 N N N 1.497 -6.664 18.824 -4.724 0.176 0.496 C43 GC5 27 GC5 S44 S1 S 0 1 N N N 0.584 -8.218 18.909 -6.067 0.758 1.562 S44 GC5 28 GC5 O25 O8 O 0 1 N Y N -10.411 -11.587 12.445 7.325 3.203 -1.397 O25 GC5 29 GC5 H1 H1 H 0 1 N N N 3.456 -11.875 20.589 -11.728 0.399 -1.650 H1 GC5 30 GC5 H2 H2 H 0 1 N N N 5.245 -11.713 20.587 -11.071 -0.969 -0.720 H2 GC5 31 GC5 H3 H3 H 0 1 N N N 4.529 -13.772 19.445 -10.600 -0.445 -3.690 H3 GC5 32 GC5 H4 H4 H 0 1 N N N 3.537 -12.800 18.306 -9.942 -1.813 -2.760 H4 GC5 33 GC5 H5 H5 H 0 1 N N N 5.326 -12.637 18.303 -11.698 -1.671 -3.014 H5 GC5 34 GC5 H281 H6 H 0 0 N N N -7.991 -9.825 12.814 6.537 -0.641 0.414 H281 GC5 35 GC5 H282 H7 H 0 0 N N N -8.545 -10.037 14.509 4.915 0.086 0.508 H282 GC5 36 GC5 H8 H8 H 0 1 N N N 2.781 -7.816 21.238 -8.860 1.692 1.801 H8 GC5 37 GC5 H9 H9 H 0 1 N Y N 4.909 -8.854 20.830 -10.626 1.832 0.149 H9 GC5 38 GC5 H10 H10 H 0 1 N N N 5.129 -10.149 18.728 -8.767 -0.215 -1.241 H10 GC5 39 GC5 H11 H11 H 0 1 N N N 3.347 -10.355 18.638 -9.424 1.152 -2.171 H11 GC5 40 GC5 HOP1 H12 H 0 0 N N N -8.756 -14.197 11.730 4.900 3.231 0.125 HOP1 GC5 41 GC5 H301 H13 H 0 0 N N N -7.096 -9.494 16.192 4.362 0.128 -2.505 H301 GC5 42 GC5 H302 H14 H 0 0 N N N -6.677 -11.235 16.060 3.634 -1.493 -2.612 H302 GC5 43 GC5 H303 H15 H 0 0 N N N -5.374 -10.001 16.129 3.216 -0.417 -1.257 H303 GC5 44 GC5 H311 H16 H 0 0 N N N -4.420 -10.894 14.019 7.080 -2.236 -1.490 H311 GC5 45 GC5 H312 H17 H 0 0 N N N -5.726 -12.125 13.941 5.887 -2.454 -2.793 H312 GC5 46 GC5 H313 H18 H 0 0 N N N -5.449 -11.021 12.551 6.696 -0.883 -2.581 H313 GC5 47 GC5 H32 H19 H 0 1 N N N -6.185 -8.679 12.678 4.333 -3.284 -0.983 H32 GC5 48 GC5 H33 H20 H 0 1 N N N -7.876 -8.040 14.148 6.115 -2.372 1.120 H33 GC5 49 GC5 H36 H21 H 0 1 N N N -4.894 -8.183 16.090 2.169 -1.991 -0.874 H36 GC5 50 GC5 H371 H22 H 0 0 N N N -2.871 -6.640 14.528 1.059 -2.106 1.720 H371 GC5 51 GC5 H372 H23 H 0 0 N N N -3.820 -5.915 15.871 1.522 -0.420 1.382 H372 GC5 52 GC5 H381 H24 H 0 0 N N N -2.746 -7.440 17.482 0.155 -0.461 -0.686 H381 GC5 53 GC5 H382 H25 H 0 0 N N N -1.837 -8.232 16.150 -0.308 -2.146 -0.348 H382 GC5 54 GC5 H41 H26 H 0 1 N N N -1.083 -6.125 18.561 -2.527 -0.623 -0.478 H41 GC5 55 GC5 H421 H27 H 0 0 N N N 1.273 -6.149 16.750 -3.637 -0.737 2.116 H421 GC5 56 GC5 H422 H28 H 0 0 N N N 1.043 -4.782 17.891 -3.174 0.948 1.778 H422 GC5 57 GC5 H431 H29 H 0 0 N N N 2.554 -6.855 18.585 -4.541 0.908 -0.290 H431 GC5 58 GC5 H432 H30 H 0 0 N N N 1.429 -6.129 19.782 -5.004 -0.777 0.048 H432 GC5 59 GC5 HOP2 H31 H 0 0 N Y N -10.560 -11.012 11.704 7.718 4.020 -1.061 HOP2 GC5 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GC5 O26 P24 DOUB N N 1 GC5 P24 O23 SING N N 2 GC5 P24 O27 SING N N 3 GC5 O35 C34 DOUB N N 4 GC5 O27 C28 SING N N 5 GC5 C31 C29 SING N N 6 GC5 C28 C29 SING N N 7 GC5 C32 C34 SING N N 8 GC5 C32 C29 SING N N 9 GC5 C32 O33 SING N N 10 GC5 C34 N36 SING N N 11 GC5 C29 C30 SING N N 12 GC5 N36 C37 SING N N 13 GC5 C37 C38 SING N N 14 GC5 O40 C39 DOUB N N 15 GC5 C38 C39 SING N N 16 GC5 C39 N41 SING N N 17 GC5 N41 C42 SING N N 18 GC5 C42 C43 SING N N 19 GC5 C43 S44 SING N N 20 GC5 S44 C10 SING N N 21 GC5 C5 C4 SING N N 22 GC5 C3 C4 SING N N 23 GC5 C3 C2 SING N N 24 GC5 C10 O1 DOUB N N 25 GC5 C10 C1 SING N N 26 GC5 C2 C1 DOUB N Z 27 GC5 P24 O25 SING N N 28 GC5 C4 H1 SING N N 29 GC5 C4 H2 SING N N 30 GC5 C5 H3 SING N N 31 GC5 C5 H4 SING N N 32 GC5 C5 H5 SING N N 33 GC5 C28 H281 SING N N 34 GC5 C28 H282 SING N N 35 GC5 C1 H8 SING N N 36 GC5 C2 H9 SING N N 37 GC5 C3 H10 SING N N 38 GC5 C3 H11 SING N N 39 GC5 O23 HOP1 SING N N 40 GC5 C30 H301 SING N N 41 GC5 C30 H302 SING N N 42 GC5 C30 H303 SING N N 43 GC5 C31 H311 SING N N 44 GC5 C31 H312 SING N N 45 GC5 C31 H313 SING N N 46 GC5 C32 H32 SING N N 47 GC5 O33 H33 SING N N 48 GC5 N36 H36 SING N N 49 GC5 C37 H371 SING N N 50 GC5 C37 H372 SING N N 51 GC5 C38 H381 SING N N 52 GC5 C38 H382 SING N N 53 GC5 N41 H41 SING N N 54 GC5 C42 H421 SING N N 55 GC5 C42 H422 SING N N 56 GC5 C43 H431 SING N N 57 GC5 C43 H432 SING N N 58 GC5 O25 HOP2 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GC5 InChI InChI 1.06 "InChI=1S/C17H31N2O8PS/c1-4-5-6-7-14(21)29-11-10-18-13(20)8-9-19-16(23)15(22)17(2,3)12-27-28(24,25)26/h6-7,15,22H,4-5,8-12H2,1-3H3,(H,18,20)(H,19,23)(H2,24,25,26)/b7-6-/t15-/m0/s1" GC5 InChIKey InChI 1.06 IGFUSVMDVYHKKE-XHPSBEMXSA-N GC5 SMILES_CANONICAL CACTVS 3.385 "CCC\C=C/C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O" GC5 SMILES CACTVS 3.385 "CCCC=CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O" GC5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC/C=C\C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O" GC5 SMILES "OpenEye OEToolkits" 2.0.7 "CCCC=CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id GC5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (~{Z})-hex-2-enethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GC5 "Create component" 2022-01-28 PDBE GC5 "Modify descriptor" 2022-08-22 RCSB GC5 "Initial release" 2023-02-01 RCSB GC5 "Modify descriptor" 2023-03-23 PDBE #