data_GCN # _chem_comp.id GCN _chem_comp.name "2-amino-2,3-dideoxy-alpha-D-glucoyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-DEOXY-D-GLUCOSAMINE; 3-deoxy-alpha-D-glucosamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GCN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GCN 3-DEOXY-D-GLUCOSAMINE PDB ? 2 GCN 3-deoxy-alpha-D-glucosamine PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GCN C1 C1 C 0 1 N N S 54.919 73.783 59.680 1.200 0.207 1.010 C1 GCN 1 GCN C2 C2 C 0 1 N N R 53.965 74.757 59.006 -0.042 0.567 1.827 C2 GCN 2 GCN C3 C3 C 0 1 N N N 52.749 74.036 58.500 -1.267 -0.110 1.203 C3 GCN 3 GCN C4 C4 C 0 1 N N S 53.324 73.155 57.390 -1.331 0.263 -0.282 C4 GCN 4 GCN C5 C5 C 0 1 N N R 54.295 72.127 57.977 0.008 -0.076 -0.940 C5 GCN 5 GCN C6 C6 C 0 1 N N N 55.080 71.332 56.865 -0.056 0.264 -2.430 C6 GCN 6 GCN N2 N2 N 0 1 N N N 53.558 75.786 59.953 0.126 0.101 3.210 N2 GCN 7 GCN O1 O1 O 0 1 N Y N 54.498 73.331 60.962 1.361 -1.212 0.999 O1 GCN 8 GCN O4 O4 O 0 1 N N N 52.305 72.456 56.651 -2.378 -0.473 -0.916 O4 GCN 9 GCN O5 O5 O 0 1 N N N 55.300 72.725 58.807 1.052 0.678 -0.327 O5 GCN 10 GCN O6 O6 O 0 1 N N N 54.457 71.532 55.560 1.193 -0.052 -3.045 O6 GCN 11 GCN H1 H1 H 0 1 N N N 55.839 74.373 59.898 2.079 0.667 1.461 H1 GCN 12 GCN H2 H2 H 0 1 N N N 54.491 75.229 58.143 -0.181 1.648 1.821 H2 GCN 13 GCN H3 H31 H 0 1 N N N 52.170 73.488 59.280 -1.177 -1.192 1.304 H3 GCN 14 GCN H32 H32 H 0 1 N N N 51.908 74.698 58.185 -2.171 0.232 1.706 H32 GCN 15 GCN H4 H4 H 0 1 N N N 53.853 73.839 56.687 -1.525 1.331 -0.380 H4 GCN 16 GCN H5 H5 H 0 1 N N N 53.638 71.448 58.569 0.211 -1.140 -0.819 H5 GCN 17 GCN H61 H61 H 0 1 N N N 56.163 71.595 56.852 -0.850 -0.315 -2.901 H61 GCN 18 GCN H62 H62 H 0 1 N N N 55.176 70.250 57.117 -0.262 1.327 -2.551 H62 GCN 19 GCN HN21 HN21 H 0 0 N N N 52.918 76.439 59.501 0.941 0.570 3.576 HN21 GCN 20 GCN HN22 HN22 H 0 0 N Y N 54.358 76.260 60.370 -0.665 0.447 3.731 HN22 GCN 21 GCN HO1 HO1 H 0 1 N Y N 55.093 72.722 61.383 2.154 -1.399 0.479 HO1 GCN 22 GCN HO4 HO4 H 0 1 N Y N 52.662 71.908 55.961 -3.200 -0.234 -0.466 HO4 GCN 23 GCN HO6 HO6 H 0 1 N N N 54.930 71.052 54.889 1.110 0.176 -3.981 HO6 GCN 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GCN C1 C2 SING N N 1 GCN C1 O1 SING N N 2 GCN C1 O5 SING N N 3 GCN C1 H1 SING N N 4 GCN C2 C3 SING N N 5 GCN C2 N2 SING N N 6 GCN C2 H2 SING N N 7 GCN C3 C4 SING N N 8 GCN C3 H3 SING N N 9 GCN C3 H32 SING N N 10 GCN C4 C5 SING N N 11 GCN C4 O4 SING N N 12 GCN C4 H4 SING N N 13 GCN C5 C6 SING N N 14 GCN C5 O5 SING N N 15 GCN C5 H5 SING N N 16 GCN C6 O6 SING N N 17 GCN C6 H61 SING N N 18 GCN C6 H62 SING N N 19 GCN N2 HN21 SING N N 20 GCN N2 HN22 SING N N 21 GCN O1 HO1 SING N N 22 GCN O4 HO4 SING N N 23 GCN O6 HO6 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GCN SMILES ACDLabs 10.04 "OC1C(OC(O)C(N)C1)CO" GCN SMILES_CANONICAL CACTVS 3.341 "N[C@@H]1C[C@H](O)[C@@H](CO)O[C@@H]1O" GCN SMILES CACTVS 3.341 "N[CH]1C[CH](O)[CH](CO)O[CH]1O" GCN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H](O[C@@H]([C@H]1O)CO)O)N" GCN SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC(C1O)CO)O)N" GCN InChI InChI 1.03 "InChI=1S/C6H13NO4/c7-3-1-4(9)5(2-8)11-6(3)10/h3-6,8-10H,1-2,7H2/t3-,4+,5-,6+/m1/s1" GCN InChIKey InChI 1.03 SNDZDGQLFKEBLF-MOJAZDJTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCN "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-2,3-dideoxy-alpha-D-ribo-hexopyranose" GCN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,5-diol" GCN "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-3-deoxy-GlcpN # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GCN "CARBOHYDRATE ISOMER" D PDB ? GCN "CARBOHYDRATE RING" pyranose PDB ? GCN "CARBOHYDRATE ANOMER" alpha PDB ? GCN "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GCN "Create component" 1999-07-08 RCSB GCN "Modify descriptor" 2011-06-04 RCSB GCN "Other modification" 2020-07-03 RCSB GCN "Modify name" 2020-07-17 RCSB GCN "Modify synonyms" 2020-07-17 RCSB GCN "Modify linking type" 2020-07-17 RCSB GCN "Modify atom id" 2020-07-17 RCSB GCN "Modify component atom id" 2020-07-17 RCSB GCN "Modify leaving atom flag" 2020-07-17 RCSB ##