data_GCP # _chem_comp.id GCP _chem_comp.name "PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces GTO _chem_comp.formula_weight 521.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HOP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GCP PG PG P 0 1 N N N N N N 8.611 24.356 -18.319 -1.285 -0.306 7.434 PG GCP 1 GCP O1G O1G O 0 1 N N N N N N 9.946 24.604 -17.696 -1.812 1.072 7.323 O1G GCP 2 GCP O2G O2G O 0 1 N N N N N N 8.464 22.985 -18.867 -2.228 -1.163 8.418 O2G GCP 3 GCP O3G O3G O 0 1 N N N N N N 8.152 25.445 -19.223 0.210 -0.261 8.029 O3G GCP 4 GCP C3B C3B C 0 1 N N N N N N 7.382 24.457 -17.000 -1.260 -1.083 5.786 C3B GCP 5 GCP PB PB P 0 1 N N R N N N 6.838 23.478 -15.600 -0.192 -0.111 4.672 PB GCP 6 GCP O1B O1B O 0 1 N N N N N N 8.013 22.870 -14.923 -0.719 1.266 4.560 O1B GCP 7 GCP O2B O2B O 0 1 N N N N N N 6.078 24.506 -14.877 1.303 -0.067 5.267 O2B GCP 8 GCP O3A O3A O 0 1 N N N N N N 5.744 22.325 -15.930 -0.170 -0.798 3.216 O3A GCP 9 GCP PA PA P 0 1 N N S N N N 4.424 21.795 -15.117 0.786 0.106 2.290 PA GCP 10 GCP O1A O1A O 0 1 N N N N N N 4.095 22.670 -13.959 0.244 1.481 2.215 O1A GCP 11 GCP O2A O2A O 0 1 N N N N N N 3.404 21.555 -16.176 2.265 0.147 2.925 O2A GCP 12 GCP "O5'" O5* O 0 1 N N N N N N 4.586 20.385 -14.335 0.855 -0.525 0.810 "O5'" GCP 13 GCP "C5'" C5* C 0 1 N N N N N N 5.327 19.200 -14.753 1.714 0.318 0.041 "C5'" GCP 14 GCP "C4'" C4* C 0 1 N N R N N N 4.674 17.905 -14.320 1.823 -0.229 -1.383 "C4'" GCP 15 GCP "O4'" O4* O 0 1 N N N N N N 4.837 17.700 -12.940 0.526 -0.237 -2.019 "O4'" GCP 16 GCP "C3'" C3* C 0 1 N N S N N N 3.189 18.015 -14.467 2.685 0.708 -2.258 "C3'" GCP 17 GCP "O3'" O3* O 0 1 N N N N N N 2.827 17.409 -15.728 4.023 0.216 -2.350 "O3'" GCP 18 GCP "C2'" C2* C 0 1 N N R N N N 2.686 17.409 -13.181 1.995 0.670 -3.642 "C2'" GCP 19 GCP "O2'" O2* O 0 1 N N N N N N 1.740 16.472 -13.696 2.888 0.156 -4.632 "O2'" GCP 20 GCP "C1'" C1* C 0 1 N N R N N N 3.903 16.763 -12.448 0.797 -0.282 -3.437 "C1'" GCP 21 GCP N9 N9 N 0 1 Y N N N N N 4.139 16.877 -11.086 -0.364 0.189 -4.194 N9 GCP 22 GCP C8 C8 C 0 1 Y N N N N N 4.410 18.049 -10.451 -1.313 1.065 -3.753 C8 GCP 23 GCP N7 N7 N 0 1 Y N N N N N 4.900 18.009 -9.232 -2.200 1.260 -4.685 N7 GCP 24 GCP C5 C5 C 0 1 Y N N N N N 4.971 16.623 -9.015 -1.875 0.523 -5.775 C5 GCP 25 GCP C6 C6 C 0 1 Y N N N N N 5.424 15.933 -7.861 -2.458 0.342 -7.051 C6 GCP 26 GCP O6 O6 O 0 1 N N N N N N 5.895 16.426 -6.838 -3.483 0.926 -7.358 O6 GCP 27 GCP N1 N1 N 0 1 Y N N N N N 5.338 14.550 -7.983 -1.846 -0.488 -7.923 N1 GCP 28 GCP C2 C2 C 0 1 Y N N N N N 4.898 13.847 -9.094 -0.703 -1.140 -7.568 C2 GCP 29 GCP N2 N2 N 0 1 N N N N N N 4.889 12.511 -9.019 -0.107 -1.982 -8.472 N2 GCP 30 GCP N3 N3 N 0 1 Y N N N N N 4.477 14.525 -10.199 -0.152 -0.980 -6.385 N3 GCP 31 GCP C4 C4 C 0 1 Y N N N N N 4.518 15.910 -10.118 -0.697 -0.169 -5.472 C4 GCP 32 GCP HOG2 2HOG H 0 0 N N N N N N 7.615 22.827 -19.263 -2.214 -0.719 9.277 HOG2 GCP 33 GCP HOG3 3HOG H 0 0 N N N N N N 7.303 25.287 -19.619 0.515 -1.177 8.086 HOG3 GCP 34 GCP H3B1 1H3B H 0 0 N N N N N N 7.616 25.439 -16.528 -2.272 -1.113 5.383 H3B1 GCP 35 GCP H3B2 2H3B H 0 0 N N N N N N 6.434 24.611 -17.566 -0.871 -2.098 5.868 H3B2 GCP 36 GCP HOB2 2HOB H 0 0 N N N N N N 5.789 23.987 -14.135 1.609 -0.983 5.324 HOB2 GCP 37 GCP HOA2 2HOA H 0 0 N N N N N N 2.638 21.247 -15.704 2.581 -0.765 2.956 HOA2 GCP 38 GCP "H5'2" 2H5* H 0 0 N N N N N N 5.345 19.191 -15.840 1.302 1.327 0.012 "H5'2" GCP 39 GCP "H5'1" 1H5* H 0 0 N N N N N N 6.338 19.251 -14.345 2.703 0.342 0.497 "H5'1" GCP 40 GCP "H4'" H4* H 0 1 N N N N N N 5.071 17.062 -14.887 2.246 -1.233 -1.372 "H4'" GCP 41 GCP "H3'" H3* H 0 1 N N N N N N 2.870 19.059 -14.440 2.678 1.720 -1.854 "H3'" GCP 42 GCP "HO3'" *HO3 H 0 0 N N N N N N 3.454 16.705 -15.927 4.512 0.838 -2.905 "HO3'" GCP 43 GCP "H2'" H2* H 0 1 N N N N N N 2.231 18.193 -12.573 1.647 1.664 -3.922 "H2'" GCP 44 GCP "HO2'" *HO2 H 0 0 N N N N N N 0.940 16.955 -13.924 3.642 0.761 -4.670 "HO2'" GCP 45 GCP "H1'" H1* H 0 1 N N N N N N 4.110 15.755 -12.813 1.062 -1.295 -3.741 "H1'" GCP 46 GCP H8 H8 H 0 1 N N N N N N 4.242 19.009 -10.940 -1.325 1.528 -2.777 H8 GCP 47 GCP HN1 HN1 H 0 1 N N N N N N 5.616 13.961 -7.209 -2.227 -0.628 -8.804 HN1 GCP 48 GCP HN21 1HN2 H 0 0 N N N N N N 5.407 11.980 -9.664 0.708 -2.450 -8.235 HN21 GCP 49 GCP HN22 2HN2 H 0 0 N N N N N N 4.318 12.041 -8.375 -0.505 -2.113 -9.348 HN22 GCP 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GCP PG O1G DOUB N N 1 GCP PG O2G SING N N 2 GCP PG O3G SING N N 3 GCP PG C3B SING N N 4 GCP O2G HOG2 SING N N 5 GCP O3G HOG3 SING N N 6 GCP C3B PB SING N N 7 GCP C3B H3B1 SING N N 8 GCP C3B H3B2 SING N N 9 GCP PB O1B DOUB N N 10 GCP PB O2B SING N N 11 GCP PB O3A SING N N 12 GCP O2B HOB2 SING N N 13 GCP O3A PA SING N N 14 GCP PA O1A DOUB N N 15 GCP PA O2A SING N N 16 GCP PA "O5'" SING N N 17 GCP O2A HOA2 SING N N 18 GCP "O5'" "C5'" SING N N 19 GCP "C5'" "C4'" SING N N 20 GCP "C5'" "H5'2" SING N N 21 GCP "C5'" "H5'1" SING N N 22 GCP "C4'" "O4'" SING N N 23 GCP "C4'" "C3'" SING N N 24 GCP "C4'" "H4'" SING N N 25 GCP "O4'" "C1'" SING N N 26 GCP "C3'" "O3'" SING N N 27 GCP "C3'" "C2'" SING N N 28 GCP "C3'" "H3'" SING N N 29 GCP "O3'" "HO3'" SING N N 30 GCP "C2'" "O2'" SING N N 31 GCP "C2'" "C1'" SING N N 32 GCP "C2'" "H2'" SING N N 33 GCP "O2'" "HO2'" SING N N 34 GCP "C1'" N9 SING N N 35 GCP "C1'" "H1'" SING N N 36 GCP N9 C8 SING Y N 37 GCP N9 C4 SING Y N 38 GCP C8 N7 DOUB Y N 39 GCP C8 H8 SING N N 40 GCP N7 C5 SING Y N 41 GCP C5 C6 SING Y N 42 GCP C5 C4 DOUB Y N 43 GCP C6 O6 DOUB N N 44 GCP C6 N1 SING Y N 45 GCP N1 C2 SING Y N 46 GCP N1 HN1 SING N N 47 GCP C2 N2 SING N N 48 GCP C2 N3 DOUB Y N 49 GCP N2 HN21 SING N N 50 GCP N2 HN22 SING N N 51 GCP N3 C4 SING Y N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GCP SMILES ACDLabs 10.04 "O=P(O)(O)CP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" GCP SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O" GCP SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O" GCP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N" GCP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N" GCP InChI InChI 1.03 "InChI=1S/C11H18N5O13P3/c12-11-14-8-5(9(19)15-11)13-2-16(8)10-7(18)6(17)4(28-10)1-27-32(25,26)29-31(23,24)3-30(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1" GCP InChIKey InChI 1.03 PHBDHXOBFUBCJD-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]oxy}phosphoryl]guanosine" GCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GCP "Create component" 1999-07-08 RCSB GCP "Modify descriptor" 2011-06-04 RCSB GCP "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 GCP ILE None "Covalent chemical modification" "Amino-acid side chain" "Any position" O1G CD1 ? ? 2 GCP LYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" O1B CB ? ? #