data_GCV # _chem_comp.id GCV _chem_comp.name "4-O-methyl-alpha-D-glucopyranuronic acid" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H12 O7" _chem_comp.mon_nstd_parent_comp_id GCU _chem_comp.pdbx_synonyms "4-O-METHYL-ALPHA-D-GLUCURONIC ACID; 4-O-methyl-D-glucuronic acid; 4-O-methyl-glucuronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-11-06 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 208.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GCV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1H41 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GCV "4-O-METHYL-ALPHA-D-GLUCURONIC ACID" PDB ? 2 GCV "4-O-methyl-D-glucuronic acid" PDB ? 3 GCV "4-O-methyl-glucuronic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GCV C7 C7 C 0 1 N N N 5.672 -11.745 7.235 -2.823 -0.217 1.272 C7 GCV 1 GCV C1 C1 C 0 1 N N S 9.220 -12.824 3.472 1.561 -0.147 -1.363 C1 GCV 2 GCV C2 C2 C 0 1 N N R 9.745 -12.168 4.773 0.212 -0.529 -1.977 C2 GCV 3 GCV C3 C3 C 0 1 N N R 8.777 -12.405 5.933 -0.906 0.179 -1.206 C3 GCV 4 GCV C4 C4 C 0 1 N N S 7.312 -12.211 5.580 -0.754 -0.142 0.284 C4 GCV 5 GCV C5 C5 C 0 1 N N S 6.991 -12.996 4.319 0.667 0.208 0.729 C5 GCV 6 GCV C6 C6 C 0 1 N N N 5.558 -12.789 3.881 0.817 -0.075 2.202 C6 GCV 7 GCV O1 O1 O 0 1 N Y N 9.394 -14.247 3.561 1.725 1.270 -1.422 O1 GCV 8 GCV O2 O2 O 0 1 N N N 11.000 -12.799 5.142 0.178 -0.125 -3.348 O2 GCV 9 GCV O3 O3 O 0 1 N N N 9.158 -11.512 7.015 -2.177 -0.280 -1.668 O3 GCV 10 GCV O4 O4 O 0 1 N N N 6.517 -12.712 6.656 -1.694 0.626 1.038 O4 GCV 11 GCV O5 O5 O 0 1 N N N 7.842 -12.563 3.260 1.609 -0.572 -0.002 O5 GCV 12 GCV O6A O6A O 0 1 N N N 4.691 -13.437 4.426 1.602 -0.914 2.578 O6A GCV 13 GCV O6B O6B O 0 1 N N N 5.302 -11.984 2.950 0.079 0.601 3.095 O6B GCV 14 GCV H71 H71 H 0 1 N N N 5.051 -12.136 8.074 -3.568 0.325 1.855 H71 GCV 15 GCV H72 H72 H 0 1 N N N 6.258 -10.854 7.561 -3.257 -0.518 0.318 H72 GCV 16 GCV H73 H73 H 0 1 N N N 5.028 -11.270 6.458 -2.507 -1.103 1.823 H73 GCV 17 GCV H1 H1 H 0 1 N N N 9.804 -12.437 2.605 2.363 -0.629 -1.922 H1 GCV 18 GCV H2 H2 H 0 1 N N N 9.897 -11.074 4.617 0.074 -1.608 -1.911 H2 GCV 19 GCV H3 H3 H 0 1 N N N 8.911 -13.454 6.287 -0.830 1.256 -1.357 H3 GCV 20 GCV H4 H4 H 0 1 N N N 7.098 -11.128 5.420 -0.936 -1.204 0.449 H4 GCV 21 GCV H5 H5 H 0 1 N N N 7.164 -14.081 4.508 0.852 1.266 0.544 H5 GCV 22 GCV HO1 HO1 H 0 1 N Y N 9.072 -14.649 2.763 2.585 1.469 -1.026 HO1 GCV 23 GCV HO2 HO2 H 0 1 N Y N 11.322 -12.397 5.940 0.896 -0.593 -3.795 HO2 GCV 24 GCV HO3 HO3 H 0 1 N Y N 8.557 -11.659 7.736 -2.230 -0.058 -2.608 HO3 GCV 25 GCV HO6B HOB H 0 0 N N N 4.402 -11.854 2.674 0.175 0.419 4.039 HO6B GCV 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GCV C7 O4 SING N N 1 GCV C7 H71 SING N N 2 GCV C7 H72 SING N N 3 GCV C7 H73 SING N N 4 GCV C1 C2 SING N N 5 GCV C1 O1 SING N N 6 GCV C1 O5 SING N N 7 GCV C1 H1 SING N N 8 GCV C2 C3 SING N N 9 GCV C2 O2 SING N N 10 GCV C2 H2 SING N N 11 GCV C3 C4 SING N N 12 GCV C3 O3 SING N N 13 GCV C3 H3 SING N N 14 GCV C4 C5 SING N N 15 GCV C4 O4 SING N N 16 GCV C4 H4 SING N N 17 GCV C5 C6 SING N N 18 GCV C5 O5 SING N N 19 GCV C5 H5 SING N N 20 GCV C6 O6A DOUB N N 21 GCV C6 O6B SING N N 22 GCV O1 HO1 SING N N 23 GCV O2 HO2 SING N N 24 GCV O3 HO3 SING N N 25 GCV O6B HO6B SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GCV SMILES ACDLabs 10.04 "O=C(O)C1OC(O)C(O)C(O)C1OC" GCV SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1[C@H](O)[C@@H](O)[C@@H](O)O[C@@H]1C(O)=O" GCV SMILES CACTVS 3.341 "CO[CH]1[CH](O)[CH](O)[CH](O)O[CH]1C(O)=O" GCV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@H]1[C@@H]([C@H]([C@H](O[C@@H]1C(=O)O)O)O)O" GCV SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(OC1C(=O)O)O)O)O" GCV InChI InChI 1.03 "InChI=1S/C7H12O7/c1-13-4-2(8)3(9)7(12)14-5(4)6(10)11/h2-5,7-9,12H,1H3,(H,10,11)/t2-,3-,4+,5+,7+/m1/s1" GCV InChIKey InChI 1.03 WGLLPAPKWFDHHV-NRGGUMNKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCV "SYSTEMATIC NAME" ACDLabs 10.04 "4-O-methyl-alpha-D-glucopyranuronic acid" GCV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4R,5R,6S)-4,5,6-trihydroxy-3-methoxy-oxane-2-carboxylic acid" GCV "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpA4OMe # _pdbx_chem_comp_related.comp_id GCV _pdbx_chem_comp_related.related_comp_id GCU _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GCV C1 GCU C1 "Carbohydrate core" 2 GCV C2 GCU C2 "Carbohydrate core" 3 GCV C3 GCU C3 "Carbohydrate core" 4 GCV C4 GCU C4 "Carbohydrate core" 5 GCV C5 GCU C5 "Carbohydrate core" 6 GCV C6 GCU C6 "Carbohydrate core" 7 GCV O1 GCU O1 "Carbohydrate core" 8 GCV O2 GCU O2 "Carbohydrate core" 9 GCV O3 GCU O3 "Carbohydrate core" 10 GCV O4 GCU O4 "Carbohydrate core" 11 GCV O5 GCU O5 "Carbohydrate core" 12 GCV O6A GCU O6A "Carbohydrate core" 13 GCV O6B GCU O6B "Carbohydrate core" 14 GCV H1 GCU H1 "Carbohydrate core" 15 GCV H2 GCU H2 "Carbohydrate core" 16 GCV H3 GCU H3 "Carbohydrate core" 17 GCV H4 GCU H4 "Carbohydrate core" 18 GCV H5 GCU H5 "Carbohydrate core" 19 GCV HO1 GCU HO1 "Carbohydrate core" 20 GCV HO2 GCU HO2 "Carbohydrate core" 21 GCV HO3 GCU HO3 "Carbohydrate core" 22 GCV HO6B GCU HO6B "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GCV "CARBOHYDRATE ISOMER" D PDB ? GCV "CARBOHYDRATE RING" pyranose PDB ? GCV "CARBOHYDRATE ANOMER" alpha PDB ? GCV "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GCV "Create component" 2001-11-06 RCSB GCV "Modify descriptor" 2011-06-04 RCSB GCV "Other modification" 2020-07-03 RCSB GCV "Modify parent residue" 2020-07-17 RCSB GCV "Modify name" 2020-07-17 RCSB GCV "Modify synonyms" 2020-07-17 RCSB GCV "Modify linking type" 2020-07-17 RCSB GCV "Modify atom id" 2020-07-17 RCSB GCV "Modify component atom id" 2020-07-17 RCSB GCV "Modify leaving atom flag" 2020-07-17 RCSB ##