data_GD2 # _chem_comp.id GD2 _chem_comp.name "(3S,4S)-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-4-(prop-2-en-1-yl)-4,5-dihydroimidazo[1,5,4-de][1,4]benzoxazine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-20 _chem_comp.pdbx_modified_date 2022-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 394.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T9U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GD2 C12 C1 C 0 1 Y N N -2.047 -30.892 13.456 -4.492 0.027 0.171 C12 GD2 1 GD2 C13 C2 C 0 1 Y N N -1.131 -29.828 13.875 -3.413 0.865 0.256 C13 GD2 2 GD2 C14 C3 C 0 1 Y N N -1.679 -28.638 14.336 -2.139 0.300 0.184 C14 GD2 3 GD2 C02 C4 C 0 1 N N N -2.496 -24.284 15.738 2.257 -0.760 0.034 C02 GD2 4 GD2 C04 C5 C 0 1 Y N N -1.907 -26.625 15.153 0.028 0.025 0.139 C04 GD2 5 GD2 C06 C6 C 0 1 Y N N -3.041 -28.390 14.418 -1.883 -1.054 0.030 C06 GD2 6 GD2 C07 C7 C 0 1 Y N N -3.954 -29.430 14.007 -2.991 -1.899 -0.056 C07 GD2 7 GD2 C08 C8 C 0 1 Y N N -3.428 -30.660 13.540 -4.274 -1.355 0.015 C08 GD2 8 GD2 C09 C9 C 0 1 N N N -4.456 -31.714 13.109 -5.439 -2.257 -0.076 C09 GD2 9 GD2 C16 C10 C 0 1 N N S 0.507 -27.607 14.756 -0.950 2.424 0.419 C16 GD2 10 GD2 C17 C11 C 0 1 N N N 1.001 -28.697 13.781 -2.292 2.800 1.067 C17 GD2 11 GD2 C19 C12 C 0 1 N N N 0.979 -27.854 16.197 -0.828 3.103 -0.947 C19 GD2 12 GD2 C20 C13 C 0 1 N N N 2.493 -27.688 16.419 -0.754 4.597 -0.761 C20 GD2 13 GD2 C21 C14 C 0 1 N N N 2.955 -27.073 17.477 0.248 5.272 -1.267 C21 GD2 14 GD2 C22 C15 C 0 1 Y N N -1.976 -22.894 16.161 3.702 -0.521 0.168 C22 GD2 15 GD2 C23 C16 C 0 1 Y N N -2.725 -21.942 16.758 4.332 0.703 0.315 C23 GD2 16 GD2 C24 C17 C 0 1 Y N N -1.878 -20.843 16.926 5.695 0.410 0.400 C24 GD2 17 GD2 C25 C18 C 0 1 N N N -2.265 -19.522 17.571 6.809 1.411 0.569 C25 GD2 18 GD2 C28 C19 C 0 1 N N N 0.369 -23.097 15.286 4.483 -2.908 0.053 C28 GD2 19 GD2 C29 C20 C 0 1 N N N 1.316 -23.663 16.361 4.639 -3.321 -1.412 C29 GD2 20 GD2 N03 N1 N 0 1 N N N -1.490 -25.325 15.622 1.390 0.265 0.157 N03 GD2 21 GD2 N05 N2 N 0 1 Y N N -3.172 -27.067 14.927 -0.529 -1.168 0.008 N05 GD2 22 GD2 N10 N3 N 0 1 N N N -5.808 -31.266 12.803 -5.254 -3.584 -0.226 N10 GD2 23 GD2 N15 N4 N 0 1 Y N N -0.957 -27.571 14.746 -0.921 0.969 0.252 N15 GD2 24 GD2 N26 N5 N 0 1 Y N N -0.682 -21.147 16.412 5.833 -0.888 0.308 N26 GD2 25 GD2 N27 N6 N 0 1 Y N N -0.755 -22.420 15.922 4.692 -1.463 0.177 N27 GD2 26 GD2 O01 O1 O 0 1 N N N -3.631 -24.478 15.507 1.844 -1.882 -0.187 O01 GD2 27 GD2 O11 O2 O 0 1 N N N -4.158 -32.856 12.979 -6.565 -1.803 -0.017 O11 GD2 28 GD2 O18 O3 O 0 1 N N N 0.309 -29.942 13.842 -3.420 2.216 0.403 O18 GD2 29 GD2 H1 H1 H 0 1 N N N -1.667 -31.835 13.090 -5.496 0.420 0.227 H1 GD2 30 GD2 H2 H2 H 0 1 N N N -5.021 -29.273 14.055 -2.856 -2.964 -0.177 H2 GD2 31 GD2 H3 H3 H 0 1 N N N 0.900 -26.636 14.421 -0.129 2.740 1.062 H3 GD2 32 GD2 H4 H4 H 0 1 N N N 2.062 -28.889 13.999 -2.285 2.467 2.105 H4 GD2 33 GD2 H5 H5 H 0 1 N N N 0.902 -28.305 12.758 -2.398 3.885 1.051 H5 GD2 34 GD2 H6 H6 H 0 1 N N N 0.457 -27.143 16.854 0.076 2.755 -1.446 H6 GD2 35 GD2 H7 H7 H 0 1 N N N 0.703 -28.882 16.476 -1.697 2.855 -1.555 H7 GD2 36 GD2 H8 H8 H 0 1 N N N 3.184 -28.085 15.690 -1.528 5.111 -0.209 H8 GD2 37 GD2 H9 H9 H 0 1 N N N 4.020 -26.965 17.617 0.300 6.342 -1.133 H9 GD2 38 GD2 H10 H10 H 0 1 N N N 2.271 -26.673 18.211 1.021 4.758 -1.818 H10 GD2 39 GD2 H11 H11 H 0 1 N N N -3.763 -22.015 17.046 3.868 1.678 0.356 H11 GD2 40 GD2 H12 H12 H 0 1 N N N -1.403 -18.839 17.554 6.996 1.570 1.631 H12 GD2 41 GD2 H13 H13 H 0 1 N N N -3.100 -19.073 17.014 7.713 1.031 0.093 H13 GD2 42 GD2 H14 H14 H 0 1 N N N -2.572 -19.699 18.612 6.523 2.355 0.105 H14 GD2 43 GD2 H15 H15 H 0 1 N N N -0.007 -23.920 14.661 3.480 -3.161 0.397 H15 GD2 44 GD2 H16 H16 H 0 1 N N N 0.918 -22.381 14.657 5.220 -3.434 0.659 H16 GD2 45 GD2 H17 H17 H 0 1 N N N 2.161 -24.172 15.875 5.641 -3.067 -1.757 H17 GD2 46 GD2 H18 H18 H 0 1 N N N 1.694 -22.841 16.986 4.484 -4.396 -1.505 H18 GD2 47 GD2 H19 H19 H 0 1 N N N 0.769 -24.380 16.990 3.902 -2.794 -2.019 H19 GD2 48 GD2 H20 H20 H 0 1 N N N -0.535 -25.146 15.860 1.722 1.171 0.257 H20 GD2 49 GD2 H21 H21 H 0 1 N N N -6.491 -31.922 12.481 -4.356 -3.946 -0.273 H21 GD2 50 GD2 H22 H22 H 0 1 N N N -6.053 -30.303 12.915 -6.020 -4.176 -0.286 H22 GD2 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GD2 N10 C09 SING N N 1 GD2 O11 C09 DOUB N N 2 GD2 C09 C08 SING N N 3 GD2 C12 C08 DOUB Y N 4 GD2 C12 C13 SING Y N 5 GD2 C08 C07 SING Y N 6 GD2 C17 O18 SING N N 7 GD2 C17 C16 SING N N 8 GD2 O18 C13 SING N N 9 GD2 C13 C14 DOUB Y N 10 GD2 C07 C06 DOUB Y N 11 GD2 C14 C06 SING Y N 12 GD2 C14 N15 SING Y N 13 GD2 C06 N05 SING Y N 14 GD2 N15 C16 SING N N 15 GD2 N15 C04 SING Y N 16 GD2 C16 C19 SING N N 17 GD2 N05 C04 DOUB Y N 18 GD2 C04 N03 SING N N 19 GD2 C28 N27 SING N N 20 GD2 C28 C29 SING N N 21 GD2 O01 C02 DOUB N N 22 GD2 N03 C02 SING N N 23 GD2 C02 C22 SING N N 24 GD2 N27 C22 SING Y N 25 GD2 N27 N26 SING Y N 26 GD2 C22 C23 DOUB Y N 27 GD2 C19 C20 SING N N 28 GD2 N26 C24 DOUB Y N 29 GD2 C20 C21 DOUB N N 30 GD2 C23 C24 SING Y N 31 GD2 C24 C25 SING N N 32 GD2 C12 H1 SING N N 33 GD2 C07 H2 SING N N 34 GD2 C16 H3 SING N N 35 GD2 C17 H4 SING N N 36 GD2 C17 H5 SING N N 37 GD2 C19 H6 SING N N 38 GD2 C19 H7 SING N N 39 GD2 C20 H8 SING N N 40 GD2 C21 H9 SING N N 41 GD2 C21 H10 SING N N 42 GD2 C23 H11 SING N N 43 GD2 C25 H12 SING N N 44 GD2 C25 H13 SING N N 45 GD2 C25 H14 SING N N 46 GD2 C28 H15 SING N N 47 GD2 C28 H16 SING N N 48 GD2 C29 H17 SING N N 49 GD2 C29 H18 SING N N 50 GD2 C29 H19 SING N N 51 GD2 N03 H20 SING N N 52 GD2 N10 H21 SING N N 53 GD2 N10 H22 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GD2 SMILES ACDLabs 12.01 "Cc1cc(n(CC)n1)C(=O)Nc1nc2cc(cc3OCC(CC=C)n1c32)C(N)=O" GD2 InChI InChI 1.03 "InChI=1S/C20H22N6O3/c1-4-6-13-10-29-16-9-12(18(21)27)8-14-17(16)26(13)20(22-14)23-19(28)15-7-11(3)24-25(15)5-2/h4,7-9,13H,1,5-6,10H2,2-3H3,(H2,21,27)(H,22,23,28)/t13-/m0/s1" GD2 InChIKey InChI 1.03 FUJSVEJZTWYXMY-ZDUSSCGKSA-N GD2 SMILES_CANONICAL CACTVS 3.385 "CCn1nc(C)cc1C(=O)Nc2nc3cc(cc4OC[C@H](CC=C)n2c34)C(N)=O" GD2 SMILES CACTVS 3.385 "CCn1nc(C)cc1C(=O)Nc2nc3cc(cc4OC[CH](CC=C)n2c34)C(N)=O" GD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCn1c(cc(n1)C)C(=O)Nc2nc3cc(cc4c3n2[C@H](CO4)CC=C)C(=O)N" GD2 SMILES "OpenEye OEToolkits" 2.0.7 "CCn1c(cc(n1)C)C(=O)Nc2nc3cc(cc4c3n2C(CO4)CC=C)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GD2 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,4S)-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-4-(prop-2-en-1-yl)-4,5-dihydroimidazo[1,5,4-de][1,4]benzoxazine-8-carboxamide" GD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(11~{S})-2-[(2-ethyl-5-methyl-pyrazol-3-yl)carbonylamino]-11-prop-2-enyl-9-oxa-1,3-diazatricyclo[6.3.1.0^{4,12}]dodeca-2,4,6,8(12)-tetraene-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GD2 "Create component" 2021-12-20 RCSB GD2 "Initial release" 2022-12-21 RCSB #