data_GDL
#

_chem_comp.id                                   GDL
_chem_comp.name                                 "2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H13 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-10-29
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       219.192
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GDL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O7A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GDL
_pdbx_chem_comp_synonyms.name        "2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GDL  C1   C1    C  0  1  N  N  N  71.823  81.429  26.794   1.148  -0.144   0.140  C1   GDL   1  
GDL  C2   C2    C  0  1  N  N  R  71.207  80.369  27.893  -0.163   0.190   0.815  C2   GDL   2  
GDL  C3   C3    C  0  1  N  N  R  71.287  78.803  27.382  -1.307  -0.317  -0.070  C3   GDL   3  
GDL  C4   C4    C  0  1  N  N  S  71.332  78.733  25.818  -1.136   0.248  -1.483  C4   GDL   4  
GDL  C5   C5    C  0  1  N  N  R  72.461  79.615  25.332   0.194  -0.236  -2.067  C5   GDL   5  
GDL  C6   C6    C  0  1  N  N  N  72.592  79.524  23.783   0.410   0.397  -3.443  C6   GDL   6  
GDL  C7   C7    C  0  1  N  N  N  73.278  80.507  29.348   0.227   0.175   3.220  C7   GDL   7  
GDL  C8   C8    C  0  1  N  N  N  73.810  80.749  30.780   0.162  -0.498   4.567  C8   GDL   8  
GDL  N2   N1    N  0  1  N  N  N  71.913  80.484  29.202  -0.226  -0.464   2.125  N2   GDL   9  
GDL  O1   O1    O  0  1  N  N  N  71.752  82.624  27.152   2.052  -0.663   0.752  O1   GDL  10  
GDL  O3   O3    O  0  1  N  N  N  70.148  78.121  27.886  -2.558   0.114   0.470  O3   GDL  11  
GDL  O4   O4    O  0  1  N  N  N  71.562  77.400  25.434  -2.212  -0.199  -2.309  O4   GDL  12  
GDL  O5   O5    O  0  1  N  N  N  72.323  81.038  25.681   1.273   0.156  -1.171  O5   GDL  13  
GDL  O6   O6    O  0  1  N  N  N  73.808  80.188  23.404   1.652  -0.055  -3.986  O6   GDL  14  
GDL  O7   O7    O  0  1  N  N  N  74.058  80.541  28.388   0.687   1.293   3.123  O7   GDL  15  
GDL  H2   H2    H  0  1  N  N  N  70.147  80.640  28.011  -0.247   1.269   0.941  H2   GDL  16  
GDL  H3   H3    H  0  1  N  N  N  72.206  78.328  27.755  -1.283  -1.406  -0.108  H3   GDL  17  
GDL  H4   H4    H  0  1  N  N  N  70.383  79.078  25.382  -1.139   1.337  -1.441  H4   GDL  18  
GDL  H5   H5    H  0  1  N  N  N  73.354  79.231  25.847   0.176  -1.321  -2.164  H5   GDL  19  
GDL  H61  H6C1  H  0  1  N  N  N  72.629  78.469  23.472  -0.403   0.109  -4.108  H61  GDL  20  
GDL  H62  H6C2  H  0  1  N  N  N  71.728  79.999  23.296   0.432   1.483  -3.343  H62  GDL  21  
GDL  H81  H8C1  H  0  1  N  N  N  73.993  79.782  31.272   0.572   0.168   5.326  H81  GDL  22  
GDL  H82  H8C2  H  0  1  N  N  N  74.750  81.319  30.730  -0.874  -0.729   4.808  H82  GDL  23  
GDL  H83  H8C3  H  0  1  N  N  N  73.066  81.318  31.356   0.744  -1.419   4.541  H83  GDL  24  
GDL  HN2  HB    H  0  1  N  N  N  71.357  80.548  30.025  -0.594  -1.358   2.203  HN2  GDL  25  
GDL  HO3  HC    H  0  1  N  Y  N  70.293  77.144  27.822  -2.622  -0.259   1.359  HO3  GDL  26  
GDL  HO4  HD    H  0  1  N  N  N  70.695  76.940  25.302  -2.066   0.178  -3.188  HO4  GDL  27  
GDL  HO6  H6    H  0  1  N  N  N  74.500  79.513  23.188   1.749   0.366  -4.850  HO6  GDL  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GDL  C1  C2   SING  N  N   1  
GDL  C1  O1   DOUB  N  N   2  
GDL  C1  O5   SING  N  N   3  
GDL  C2  C3   SING  N  N   4  
GDL  C2  N2   SING  N  N   5  
GDL  C2  H2   SING  N  N   6  
GDL  C3  C4   SING  N  N   7  
GDL  C3  O3   SING  N  N   8  
GDL  C3  H3   SING  N  N   9  
GDL  C4  C5   SING  N  N  10  
GDL  C4  O4   SING  N  N  11  
GDL  C4  H4   SING  N  N  12  
GDL  C5  C6   SING  N  N  13  
GDL  C5  O5   SING  N  N  14  
GDL  C5  H5   SING  N  N  15  
GDL  C6  O6   SING  N  N  16  
GDL  C6  H61  SING  N  N  17  
GDL  C6  H62  SING  N  N  18  
GDL  C7  C8   SING  N  N  19  
GDL  C7  N2   SING  N  N  20  
GDL  C7  O7   DOUB  N  N  21  
GDL  C8  H81  SING  N  N  22  
GDL  C8  H82  SING  N  N  23  
GDL  C8  H83  SING  N  N  24  
GDL  N2  HN2  SING  N  N  25  
GDL  O3  HO3  SING  N  N  26  
GDL  O4  HO4  SING  N  N  27  
GDL  O6  HO6  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GDL  SMILES            ACDLabs               10.04  "O=C1OC(CO)C(O)C(O)C1NC(=O)C"  
GDL  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)OC1=O"  
GDL  SMILES            CACTVS                3.341  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)OC1=O"  
GDL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](OC1=O)CO)O)O"  
GDL  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(C(C(OC1=O)CO)O)O"  
GDL  InChI             InChI                 1.03   "InChI=1S/C8H13NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-7,10,12-13H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-/m1/s1"  
GDL  InChIKey          InChI                 1.03   NELQYZRSPDCGRQ-DBRKOABJSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GDL  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-oxotetrahydro-2H-pyran-3-yl]acetamide (non-preferred name)"  
GDL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-oxo-oxan-3-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GDL  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GDL  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GDL  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GDL  "Create component"          2002-10-29  EBI   
GDL  "Modify descriptor"         2011-06-04  RCSB  
GDL  "Other modification"        2020-07-03  RCSB  
GDL  "Modify name"               2020-07-17  RCSB  
GDL  "Modify synonyms"           2020-07-17  RCSB  
GDL  "Modify internal type"      2020-07-17  RCSB  
GDL  "Modify linking type"       2020-07-17  RCSB  
GDL  "Modify atom id"            2020-07-17  RCSB  
GDL  "Modify component atom id"  2020-07-17  RCSB  
GDL  "Modify leaving atom flag"  2020-07-17  RCSB  
##