data_GDM # _chem_comp.id GDM _chem_comp.name GELDANAMYCIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H40 N2 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.636 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GDM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1YET _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GDM O1 O1 O 0 1 N N N 38.435 -50.989 68.147 1.705 0.636 -1.266 O1 GDM 1 GDM O2 O2 O 0 1 N N N 37.589 -47.387 62.638 1.793 1.918 4.186 O2 GDM 2 GDM O3 O3 O 0 1 N N N 37.968 -44.717 63.248 0.583 0.045 5.545 O3 GDM 3 GDM O4 O4 O 0 1 N N N 38.937 -43.256 61.763 -0.223 -1.993 5.885 O4 GDM 4 GDM O5 O5 O 0 1 N N N 44.943 -43.478 64.421 -4.511 -1.193 0.882 O5 GDM 5 GDM O6 O6 O 0 1 N N N 45.405 -46.265 63.758 -1.518 0.718 0.011 O6 GDM 6 GDM O7 O7 O 0 1 N N N 43.245 -44.819 68.520 -1.147 -0.165 -6.473 O7 GDM 7 GDM O8 O8 O 0 1 N N N 40.642 -44.516 69.253 1.534 0.075 -7.103 O8 GDM 8 GDM O9 O9 O 0 1 N N N 42.112 -49.448 68.120 0.294 -1.032 -2.127 O9 GDM 9 GDM N1 N1 N 0 1 N N N 39.589 -49.161 68.817 2.972 -0.481 -2.662 N1 GDM 10 GDM N2 N2 N 0 1 N N N 36.729 -43.186 62.247 0.278 -0.809 7.694 N2 GDM 11 GDM C1 C1 C 0 1 N N N 39.217 -50.118 67.848 2.657 -0.107 -1.422 C1 GDM 12 GDM C2 C2 C 0 1 N N N 39.878 -50.073 66.504 3.358 -0.522 -0.215 C2 GDM 13 GDM C3 C3 C 0 1 N N N 39.713 -48.980 65.714 2.863 -0.088 0.967 C3 GDM 14 GDM C4 C4 C 0 1 N N N 40.293 -48.799 64.387 3.461 -0.420 2.250 C4 GDM 15 GDM C5 C5 C 0 1 N N N 39.856 -47.939 63.444 2.883 -0.052 3.397 C5 GDM 16 GDM C6 C6 C 0 1 N N S 38.709 -46.995 63.529 1.591 0.717 3.433 C6 GDM 17 GDM C7 C7 C 0 1 N N S 39.111 -45.501 63.147 0.495 -0.112 4.105 C7 GDM 18 GDM C8 C8 C 0 1 N N N 40.274 -44.880 64.112 -0.865 0.346 3.633 C8 GDM 19 GDM C9 C9 C 0 1 N N N 41.406 -44.432 63.592 -1.551 -0.419 2.826 C9 GDM 20 GDM C10 C10 C 0 1 N N S 42.567 -43.787 64.288 -2.913 -0.062 2.300 C10 GDM 21 GDM C11 C11 C 0 1 N N R 43.932 -44.337 63.843 -3.142 -0.791 0.968 C11 GDM 22 GDM C12 C12 C 0 1 N N S 44.143 -45.789 64.274 -2.814 0.152 -0.191 C12 GDM 23 GDM C13 C13 C 0 1 N N N 44.198 -45.976 65.787 -2.838 -0.635 -1.503 C13 GDM 24 GDM C14 C14 C 0 1 N N R 44.363 -47.432 66.283 -2.217 0.183 -2.633 C14 GDM 25 GDM C15 C15 C 0 1 N N N 44.162 -47.582 67.831 -1.927 -0.723 -3.835 C15 GDM 26 GDM C16 C16 C 0 1 N N N 42.782 -47.190 68.272 -0.489 -0.547 -4.256 C16 GDM 27 GDM C17 C17 C 0 1 N N N 42.359 -45.958 68.576 -0.175 -0.282 -5.541 C17 GDM 28 GDM C18 C18 C 0 1 N N N 40.973 -45.667 68.987 1.249 -0.121 -5.937 C18 GDM 29 GDM C19 C19 C 0 1 N N N 40.001 -46.762 69.066 2.305 -0.196 -4.927 C19 GDM 30 GDM C20 C20 C 0 1 N N N 40.371 -48.009 68.782 1.994 -0.431 -3.639 C20 GDM 31 GDM C21 C21 C 0 1 N N N 41.783 -48.291 68.373 0.577 -0.683 -3.256 C21 GDM 32 GDM C22 C22 C 0 1 N N N 40.664 -51.289 66.124 4.576 -1.397 -0.285 C22 GDM 33 GDM C23 C23 C 0 1 N N N 37.854 -48.536 61.758 2.211 2.922 3.259 C23 GDM 34 GDM C24 C24 C 0 1 N N N 37.970 -43.672 62.356 0.197 -0.956 6.357 C24 GDM 35 GDM C25 C25 C 0 1 N N N 39.940 -44.815 65.604 -1.404 1.671 4.106 C25 GDM 36 GDM C26 C26 C 0 1 N N N 42.479 -42.276 63.978 -3.986 -0.517 3.296 C26 GDM 37 GDM C27 C27 C 0 1 N N N 45.400 -46.454 62.308 -1.690 2.135 0.060 C27 GDM 38 GDM C28 C28 C 0 1 N N N 43.452 -48.342 65.511 -3.196 1.280 -3.064 C28 GDM 39 GDM C29 C29 C 0 1 N N N 44.622 -44.825 68.924 -1.151 1.199 -6.897 C29 GDM 40 GDM HO5 HO5 H 0 1 N N N 45.786 -43.817 64.146 -4.677 -1.782 1.630 HO5 GDM 41 GDM HN1 HN1 H 0 1 N N N 39.209 -49.341 69.746 3.876 -0.780 -2.892 HN1 GDM 42 GDM HN21 1HN2 H 0 0 N N N 35.912 -43.537 62.747 0.000 -1.531 8.280 HN21 GDM 43 GDM HN22 2HN2 H 0 0 N N N 36.730 -42.410 61.584 0.614 0.018 8.072 HN22 GDM 44 GDM H3 H3 H 0 1 N N N 39.078 -48.202 66.171 1.976 0.540 0.928 H3 GDM 45 GDM H4 H4 H 0 1 N N N 41.168 -49.383 64.056 4.393 -0.971 2.303 H4 GDM 46 GDM H5 H5 H 0 1 N N N 40.481 -48.013 62.538 3.367 -0.318 4.330 H5 GDM 47 GDM H6 H6 H 0 1 N N N 38.389 -47.041 64.596 1.276 0.980 2.428 H6 GDM 48 GDM H7 H7 H 0 1 N N N 39.526 -45.508 62.112 0.629 -1.163 3.846 H7 GDM 49 GDM H9 H9 H 0 1 N N N 41.380 -44.608 62.503 -1.110 -1.368 2.521 H9 GDM 50 GDM H10 H10 H 0 1 N N N 42.502 -44.004 65.379 -2.998 1.008 2.135 H10 GDM 51 GDM H11 H11 H 0 1 N N N 43.990 -44.339 62.729 -2.500 -1.668 0.921 H11 GDM 52 GDM H12 H12 H 0 1 N N N 43.268 -46.352 63.874 -3.558 0.947 -0.225 H12 GDM 53 GDM H131 1H13 H 0 0 N N N 45.001 -45.335 66.219 -2.274 -1.561 -1.376 H131 GDM 54 GDM H132 2H13 H 0 0 N N N 43.299 -45.514 66.258 -3.870 -0.879 -1.760 H132 GDM 55 GDM H14 H14 H 0 1 N N N 45.419 -47.732 66.091 -1.290 0.641 -2.295 H14 GDM 56 GDM H151 1H15 H 0 0 N N N 44.413 -48.614 68.170 -2.103 -1.762 -3.555 H151 GDM 57 GDM H152 2H15 H 0 0 N N N 44.939 -47.014 68.393 -2.591 -0.454 -4.657 H152 GDM 58 GDM H19 H19 H 0 1 N N N 38.942 -46.642 69.352 3.339 -0.065 -5.215 H19 GDM 59 GDM H221 1H22 H 0 0 N N N 41.155 -51.255 65.123 4.944 -1.588 0.722 H221 GDM 60 GDM H222 2H22 H 0 0 N N N 41.420 -51.514 66.911 4.317 -2.342 -0.763 H222 GDM 61 GDM H223 3H22 H 0 0 N N N 40.020 -52.196 66.200 5.350 -0.897 -0.866 H223 GDM 62 GDM H231 1H23 H 0 0 N N N 37.012 -48.830 61.088 2.378 3.860 3.789 H231 GDM 63 GDM H232 2H23 H 0 0 N N N 38.774 -48.352 61.156 3.136 2.608 2.776 H232 GDM 64 GDM H233 3H23 H 0 0 N N N 38.185 -49.412 62.362 1.437 3.064 2.504 H233 GDM 65 GDM H251 1H25 H 0 0 N N N 40.733 -44.391 66.262 -2.389 1.839 3.670 H251 GDM 66 GDM H252 2H25 H 0 0 N N N 38.985 -44.259 65.754 -1.485 1.664 5.193 H252 GDM 67 GDM H253 3H25 H 0 0 N N N 39.642 -45.825 65.970 -0.729 2.469 3.797 H253 GDM 68 GDM H261 1H26 H 0 0 N N N 43.342 -41.796 64.495 -3.827 -0.020 4.253 H261 GDM 69 GDM H262 2H26 H 0 0 N N N 42.437 -42.050 62.886 -4.972 -0.256 2.911 H262 GDM 70 GDM H263 3H26 H 0 0 N N N 41.495 -41.825 64.249 -3.922 -1.596 3.431 H263 GDM 71 GDM H271 1H27 H 0 0 N N N 46.374 -46.821 61.909 -0.741 2.608 0.311 H271 GDM 72 GDM H272 2H27 H 0 0 N N N 44.566 -47.126 61.998 -2.029 2.494 -0.911 H272 GDM 73 GDM H273 3H27 H 0 0 N N N 45.085 -45.519 61.787 -2.432 2.385 0.818 H273 GDM 74 GDM H281 1H28 H 0 0 N N N 43.570 -49.391 65.868 -2.754 1.865 -3.870 H281 GDM 75 GDM H282 2H28 H 0 0 N N N 42.390 -48.003 65.551 -4.123 0.823 -3.411 H282 GDM 76 GDM H283 3H28 H 0 0 N N N 43.608 -48.254 64.410 -3.407 1.931 -2.216 H283 GDM 77 GDM H291 1H29 H 0 0 N N N 45.306 -43.945 68.880 -1.887 1.331 -7.689 H291 GDM 78 GDM H292 2H29 H 0 0 N N N 44.646 -45.198 69.974 -1.405 1.840 -6.053 H292 GDM 79 GDM H293 3H29 H 0 0 N N N 45.119 -45.645 68.356 -0.162 1.465 -7.271 H293 GDM 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GDM O1 C1 DOUB N N 1 GDM O2 C6 SING N N 2 GDM O2 C23 SING N N 3 GDM O3 C7 SING N N 4 GDM O3 C24 SING N N 5 GDM O4 C24 DOUB N N 6 GDM O5 C11 SING N N 7 GDM O5 HO5 SING N N 8 GDM O6 C12 SING N N 9 GDM O6 C27 SING N N 10 GDM O7 C17 SING N N 11 GDM O7 C29 SING N N 12 GDM O8 C18 DOUB N N 13 GDM O9 C21 DOUB N N 14 GDM N1 C1 SING N N 15 GDM N1 C20 SING N N 16 GDM N1 HN1 SING N N 17 GDM N2 C24 SING N N 18 GDM N2 HN21 SING N N 19 GDM N2 HN22 SING N N 20 GDM C1 C2 SING N N 21 GDM C2 C3 DOUB N E 22 GDM C2 C22 SING N N 23 GDM C3 C4 SING N N 24 GDM C3 H3 SING N N 25 GDM C4 C5 DOUB N Z 26 GDM C4 H4 SING N N 27 GDM C5 C6 SING N N 28 GDM C5 H5 SING N N 29 GDM C6 C7 SING N N 30 GDM C6 H6 SING N N 31 GDM C7 C8 SING N N 32 GDM C7 H7 SING N N 33 GDM C8 C9 DOUB N E 34 GDM C8 C25 SING N N 35 GDM C9 C10 SING N N 36 GDM C9 H9 SING N N 37 GDM C10 C11 SING N N 38 GDM C10 C26 SING N N 39 GDM C10 H10 SING N N 40 GDM C11 C12 SING N N 41 GDM C11 H11 SING N N 42 GDM C12 C13 SING N N 43 GDM C12 H12 SING N N 44 GDM C13 C14 SING N N 45 GDM C13 H131 SING N N 46 GDM C13 H132 SING N N 47 GDM C14 C15 SING N N 48 GDM C14 C28 SING N N 49 GDM C14 H14 SING N N 50 GDM C15 C16 SING N N 51 GDM C15 H151 SING N N 52 GDM C15 H152 SING N N 53 GDM C16 C17 DOUB N N 54 GDM C16 C21 SING N N 55 GDM C17 C18 SING N N 56 GDM C18 C19 SING N N 57 GDM C19 C20 DOUB N N 58 GDM C19 H19 SING N N 59 GDM C20 C21 SING N N 60 GDM C22 H221 SING N N 61 GDM C22 H222 SING N N 62 GDM C22 H223 SING N N 63 GDM C23 H231 SING N N 64 GDM C23 H232 SING N N 65 GDM C23 H233 SING N N 66 GDM C25 H251 SING N N 67 GDM C25 H252 SING N N 68 GDM C25 H253 SING N N 69 GDM C26 H261 SING N N 70 GDM C26 H262 SING N N 71 GDM C26 H263 SING N N 72 GDM C27 H271 SING N N 73 GDM C27 H272 SING N N 74 GDM C27 H273 SING N N 75 GDM C28 H281 SING N N 76 GDM C28 H282 SING N N 77 GDM C28 H283 SING N N 78 GDM C29 H291 SING N N 79 GDM C29 H292 SING N N 80 GDM C29 H293 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GDM SMILES ACDLabs 10.04 "O=C1C(OC)=C2C(=O)C(=C1)NC(=O)C(=CC=CC(OC)C(OC(=O)N)C(=CC(C)C(O)C(OC)CC(C)C2)C)C" GDM SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1C[C@H](C)CC2=C(OC)C(=O)C=C(NC(=O)\C(=C\C=C/[C@H](OC)[C@@H](OC(N)=O)\C(=C\[C@H](C)[C@H]1O)C)C)C2=O" GDM SMILES CACTVS 3.341 "CO[CH]1C[CH](C)CC2=C(OC)C(=O)C=C(NC(=O)C(=CC=C[CH](OC)[CH](OC(N)=O)C(=C[CH](C)[CH]1O)C)C)C2=O" GDM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1C[C@@H]([C@@H]([C@H](\C=C(\[C@@H]([C@H](\C=C/C=C(/C(=O)NC2=CC(=O)C(=C(C1)C2=O)OC)\C)OC)OC(=O)N)/C)C)O)OC" GDM SMILES "OpenEye OEToolkits" 1.5.0 "CC1CC(C(C(C=C(C(C(C=CC=C(C(=O)NC2=CC(=O)C(=C(C1)C2=O)OC)C)OC)OC(=O)N)C)C)O)OC" GDM InChI InChI 1.03 "InChI=1S/C29H40N2O9/c1-15-11-19-25(34)20(14-21(32)27(19)39-7)31-28(35)16(2)9-8-10-22(37-5)26(40-29(30)36)18(4)13-17(3)24(33)23(12-15)38-6/h8-10,13-15,17,22-24,26,33H,11-12H2,1-7H3,(H2,30,36)(H,31,35)/b10-8-,16-9+,18-13+/t15-,17+,22+,23+,24-,26+/m1/s1" GDM InChIKey InChI 1.03 QTQAWLPCGQOSGP-KSRBKZBZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GDM "SYSTEMATIC NAME" ACDLabs 10.04 "(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-13-hydroxy-8,14,19-trimethoxy-4,10,12,16-tetramethyl-3,20,22-trioxo-2-azabicyclo[16.3.1]docosa-1(21),4,6,10,18-pentaen-9-yl carbamate" GDM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3R,5S,6R,7S,8E,10S,11S,12Z,14E)-6-hydroxy-5,11,21-trimethoxy-3,7,9,15-tetramethyl-16,20,22-trioxo-17-azabicyclo[16.3.1]docosa-1(21),8,12,14,18-pentaen-10-yl] carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GDM "Create component" 1999-07-08 EBI GDM "Modify descriptor" 2011-06-04 RCSB #