GUANOSINE-5'-DIPHOSPHATE
RNA linking
HETAIN
C10 H15 N5 O11 P2
G
0
1999-07-08
2014-05-12
N
REL
443.201
G
GDP
N
Corina
N
1EK0
EBI
PB
P
0
1
N
N
N
13.635
17.027
28.402
-5.743
-1.471
0.475
PB
GDP
1
O1B
O
0
1
N
N
N
14.317
18.299
28.131
-6.829
-0.831
-0.300
O1B
GDP
2
O2B
O
0
1
N
N
N
14.465
15.868
28.851
-6.293
-1.885
1.930
O2B
GDP
3
O3B
O
0
1
N
N
N
12.657
17.014
29.609
-5.234
-2.787
-0.301
O3B
GDP
4
O3A
O
0
1
N
N
N
13.031
16.438
26.904
-4.519
-0.438
0.638
O3A
GDP
5
PA
P
0
1
N
N
N
12.164
17.382
25.843
-3.821
0.633
-0.340
PA
GDP
6
O1A
O
0
1
N
N
N
11.308
16.310
25.239
-3.718
0.063
-1.702
O1A
GDP
7
O2A
O
0
1
N
N
N
11.654
18.737
26.082
-4.708
1.976
-0.386
O2A
GDP
8
O5'
O
0
1
N
N
N
13.417
17.470
24.852
-2.348
0.981
0.208
O5'
GDP
9
C5'
C
0
1
N
N
N
14.543
18.324
25.037
-1.434
1.823
-0.497
C5'
GDP
10
C4'
C
0
1
N
N
R
15.043
18.710
23.648
-0.133
1.943
0.299
C4'
GDP
11
O4'
O
0
1
N
N
N
15.183
17.536
22.793
0.533
0.670
0.344
O4'
GDP
12
C3'
C
0
1
N
N
S
13.926
19.400
22.829
0.820
2.933
-0.399
C3'
GDP
13
O3'
O
0
1
N
N
N
14.002
20.787
23.226
1.125
4.028
0.467
O3'
GDP
14
C2'
C
0
1
N
N
R
14.511
19.303
21.406
2.091
2.098
-0.686
C2'
GDP
15
O2'
O
0
1
N
N
N
15.627
20.165
21.220
3.271
2.861
-0.428
O2'
GDP
16
C1'
C
0
1
N
N
R
15.015
17.874
21.438
1.952
0.935
0.329
C1'
GDP
17
N9
N
0
1
Y
N
N
13.968
16.928
20.922
2.691
-0.243
-0.132
N9
GDP
18
C8
C
0
1
Y
N
N
13.129
16.056
21.555
2.200
-1.252
-0.908
C8
GDP
19
N7
N
0
1
Y
N
N
12.358
15.405
20.737
3.131
-2.134
-1.125
N7
GDP
20
C5
C
0
1
Y
N
N
12.701
15.869
19.474
4.272
-1.746
-0.504
C5
GDP
21
C6
C
0
1
N
N
N
12.214
15.545
18.183
5.571
-2.295
-0.396
C6
GDP
22
O6
O
0
1
N
N
N
11.326
14.728
17.882
5.850
-3.350
-0.939
O6
GDP
23
N1
N
0
1
N
N
N
12.870
16.282
17.187
6.495
-1.620
0.324
N1
GDP
24
C2
C
0
1
N
N
N
13.858
17.205
17.402
6.171
-0.441
0.927
C2
GDP
25
N2
N
0
1
N
N
N
14.348
17.795
16.316
7.130
0.222
1.651
N2
GDP
26
N3
N
0
1
N
N
N
14.329
17.524
18.614
4.968
0.079
0.834
N3
GDP
27
C4
C
0
1
Y
N
N
13.701
16.819
19.565
4.003
-0.529
0.133
C4
GDP
28
HOB2
H
0
0
N
N
N
15.376
16.131
28.902
-7.033
-2.508
1.908
HOB2
GDP
29
HOB3
H
0
0
N
N
N
12.643
17.873
30.015
-4.521
-3.259
0.151
HOB3
GDP
30
HOA2
H
0
0
N
N
N
10.749
18.789
25.799
-4.818
2.404
0.474
HOA2
GDP
31
H5'1
H
0
1
N
N
N
14.247
19.224
25.596
-1.222
1.390
-1.475
H5'
GDP
32
H5'2
H
0
0
N
N
N
15.333
17.793
25.589
-1.874
2.811
-0.625
H5''
GDP
33
H4'
H
0
1
N
N
N
15.955
19.324
23.692
-0.349
2.285
1.312
H4'
GDP
34
H3'
H
0
1
N
N
N
12.939
18.927
22.938
0.380
3.294
-1.329
H3'
GDP
35
HO3'
H
0
0
N
Y
N
13.340
21.286
22.762
1.722
4.683
0.078
HO3'
GDP
36
H2'
H
0
1
N
N
N
13.729
19.439
20.644
2.088
1.724
-1.710
H2'
GDP
37
HO2'
H
0
0
N
N
N
15.954
20.073
20.333
3.357
3.652
-0.979
HO2'
GDP
38
H1'
H
0
1
N
N
N
15.948
17.778
20.863
2.295
1.244
1.316
H1'
GDP
39
H8
H
0
1
N
N
N
13.109
15.921
22.626
1.190
-1.310
-1.285
H8
GDP
40
HN1
H
0
1
N
N
N
12.593
16.120
16.240
7.392
-1.977
0.412
HN1
GDP
41
HN21
H
0
0
N
N
N
15.071
18.480
16.402
8.023
-0.150
1.728
HN21
GDP
42
HN22
H
0
0
N
N
N
13.993
17.554
15.413
6.915
1.062
2.086
HN22
GDP
43
doub
N
N
1
sing
N
N
2
sing
N
N
3
sing
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
doub
N
N
8
sing
N
N
9
sing
N
N
10
sing
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
sing
N
N
15
sing
N
N
16
sing
N
N
17
sing
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
sing
N
N
26
sing
N
N
27
sing
N
N
28
sing
N
N
29
sing
Y
N
30
sing
Y
N
31
doub
Y
N
32
sing
N
N
33
sing
Y
N
34
sing
N
N
35
doub
Y
N
36
doub
N
N
37
sing
N
N
38
sing
N
N
39
sing
N
N
40
sing
N
N
41
doub
N
N
42
sing
N
N
43
sing
N
N
44
sing
N
N
45
O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
QGWNDRXFNXRZMB-UUOKFMHZSA-N
NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
guanosine 5'-(trihydrogen diphosphate)
[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate
EBI
RCSB
RCSB