data_GDQ # _chem_comp.id GDQ _chem_comp.name "(1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-12 _chem_comp.pdbx_modified_date 2018-09-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 159.183 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GDQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HMG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GDQ C7 C1 C 0 1 N N N 4.955 24.740 3.307 -0.122 -1.802 0.495 C7 GDQ 1 GDQ C4 C2 C 0 1 N N R 2.812 24.027 4.365 0.344 0.666 0.269 C4 GDQ 2 GDQ C2 C3 C 0 1 N N S 4.926 22.774 4.983 -2.057 -0.074 0.072 C2 GDQ 3 GDQ C1 C4 C 0 1 N N S 5.709 23.724 4.135 -1.598 -1.495 0.356 C1 GDQ 4 GDQ O4 O1 O 0 1 N N N 1.403 23.778 4.166 1.278 1.592 -0.288 O4 GDQ 5 GDQ C5 C5 C 0 1 N N R 3.510 24.374 3.041 0.757 -0.735 -0.122 C5 GDQ 6 GDQ C6 C6 C 0 1 N N N 2.848 25.532 2.273 2.202 -0.966 0.326 C6 GDQ 7 GDQ O6 O2 O 0 1 N N N 3.000 26.801 2.911 3.061 -0.039 -0.339 O6 GDQ 8 GDQ C3 C7 C 0 1 N N R 3.408 22.787 4.993 -1.046 1.026 -0.213 C3 GDQ 9 GDQ O3 O3 O 0 1 N N N 2.948 22.730 6.358 -1.468 2.224 0.442 O3 GDQ 10 GDQ N2 N1 N 0 1 N N N 5.609 22.307 3.745 -2.163 -1.140 -0.944 N2 GDQ 11 GDQ H1 H1 H 0 1 N N N 5.468 24.846 2.340 0.121 -1.889 1.554 H1 GDQ 12 GDQ H2 H2 H 0 1 N N N 4.975 25.702 3.840 0.087 -2.754 0.008 H2 GDQ 13 GDQ H3 H3 H 0 1 N N N 2.943 24.871 5.058 0.371 0.751 1.356 H3 GDQ 14 GDQ H4 H4 H 0 1 N N N 5.399 22.480 5.931 -2.980 0.251 0.553 H4 GDQ 15 GDQ H5 H5 H 0 1 N N N 6.675 24.057 4.542 -2.248 -2.086 1.002 H5 GDQ 16 GDQ H6 H6 H 0 1 N N N 0.998 23.566 4.999 1.114 2.513 -0.042 H6 GDQ 17 GDQ H7 H7 H 0 1 N N N 3.490 23.481 2.398 0.710 -0.826 -1.207 H7 GDQ 18 GDQ H8 H8 H 0 1 N N N 1.773 25.317 2.178 2.275 -0.821 1.404 H8 GDQ 19 GDQ H9 H9 H 0 1 N N N 3.301 25.589 1.272 2.501 -1.984 0.076 H9 GDQ 20 GDQ H10 H10 H 0 1 N N N 2.572 27.471 2.391 3.995 -0.128 -0.103 H10 GDQ 21 GDQ H11 H11 H 0 1 N N N 3.046 21.905 4.444 -1.012 1.205 -1.287 H11 GDQ 22 GDQ H12 H12 H 0 1 N N N 3.307 21.959 6.782 -0.896 2.986 0.274 H12 GDQ 23 GDQ H13 H13 H 0 1 N N N 5.068 22.047 2.945 -1.439 -1.049 -1.640 H13 GDQ 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GDQ C6 O6 SING N N 1 GDQ C6 C5 SING N N 2 GDQ C5 C7 SING N N 3 GDQ C5 C4 SING N N 4 GDQ C7 C1 SING N N 5 GDQ N2 C1 SING N N 6 GDQ N2 C2 SING N N 7 GDQ C1 C2 SING N N 8 GDQ O4 C4 SING N N 9 GDQ C4 C3 SING N N 10 GDQ C2 C3 SING N N 11 GDQ C3 O3 SING N N 12 GDQ C7 H1 SING N N 13 GDQ C7 H2 SING N N 14 GDQ C4 H3 SING N N 15 GDQ C2 H4 SING N N 16 GDQ C1 H5 SING N N 17 GDQ O4 H6 SING N N 18 GDQ C5 H7 SING N N 19 GDQ C6 H8 SING N N 20 GDQ C6 H9 SING N N 21 GDQ O6 H10 SING N N 22 GDQ C3 H11 SING N N 23 GDQ O3 H12 SING N N 24 GDQ N2 H13 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GDQ InChI InChI 1.03 "InChI=1S/C7H13NO3/c9-2-3-1-4-5(8-4)7(11)6(3)10/h3-11H,1-2H2/t3-,4+,5+,6-,7-/m1/s1" GDQ InChIKey InChI 1.03 JACJTGDBUDQHPY-VOQCIKJUSA-N GDQ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1C[C@@H]2N[C@@H]2[C@@H](O)[C@@H]1O" GDQ SMILES CACTVS 3.385 "OC[CH]1C[CH]2N[CH]2[CH](O)[CH]1O" GDQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H]([C@@H]([C@@H]2[C@H]1N2)O)O)CO" GDQ SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(C(C2C1N2)O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GDQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GDQ "Create component" 2018-09-12 EBI GDQ "Initial release" 2018-09-26 RCSB #