data_GDS # _chem_comp.id GDS _chem_comp.name "OXIDIZED GLUTATHIONE DISULFIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N6 O12 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 612.631 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GDS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2GRT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GDS N1 N1 N 0 1 N N N N N N 65.119 36.708 23.105 -1.103 2.393 6.466 N1 GDS 1 GDS CA1 CA1 C 0 1 N N S N N N 65.667 37.980 22.521 -2.373 1.986 5.848 CA1 GDS 2 GDS C1 C1 C 0 1 N N N N N N 65.429 39.221 23.442 -3.436 1.876 6.911 C1 GDS 3 GDS OE1 OE1 O 0 1 N N N N N N 66.154 40.250 23.268 -3.132 1.571 8.040 OE1 GDS 4 GDS OE2 OE2 O 0 1 N N N N N N 64.524 39.129 24.338 -4.720 2.116 6.602 OE2 GDS 5 GDS CB1 CB1 C 0 1 N N N N N N 65.152 38.194 21.062 -2.195 0.631 5.162 CB1 GDS 6 GDS CG1 CG1 C 0 1 N N N N N N 63.701 37.681 20.780 -1.115 0.743 4.083 CG1 GDS 7 GDS CD1 CD1 C 0 1 N N N N N N 62.672 38.814 20.543 -0.940 -0.592 3.407 CD1 GDS 8 GDS O1 O1 O 0 1 N N N N N N 61.452 38.541 20.487 -1.612 -1.540 3.754 O1 GDS 9 GDS N2 N2 N 0 1 N N N N N N 63.212 39.959 20.100 -0.036 -0.733 2.417 N2 GDS 10 GDS CA2 CA2 C 0 1 N N R N N N 62.490 41.218 19.758 0.133 -2.031 1.760 CA2 GDS 11 GDS C2 C2 C 0 1 N N N N N N 61.339 41.758 20.630 1.182 -2.829 2.490 C2 GDS 12 GDS O2 O2 O 0 1 N N N N N N 60.812 42.848 20.327 1.122 -4.040 2.504 O2 GDS 13 GDS CB2 CB2 C 0 1 N N N N N N 61.997 41.201 18.290 0.573 -1.815 0.311 CB2 GDS 14 GDS SG2 SG2 S 0 1 N N N N N N 63.198 40.881 16.938 -0.689 -0.853 -0.567 SG2 GDS 15 GDS N3 N3 N 0 1 N N N N N N 60.817 40.917 21.525 2.189 -2.197 3.126 N3 GDS 16 GDS CA3 CA3 C 0 1 N N N N N N 59.709 41.310 22.385 3.209 -2.974 3.836 CA3 GDS 17 GDS C3 C3 C 0 1 N N N N N N 59.731 40.644 23.753 4.212 -2.036 4.456 C3 GDS 18 GDS OE3 OE3 O 0 1 N N N N N N 59.572 41.388 24.733 4.088 -0.842 4.320 OE3 GDS 19 GDS OE4 OE4 O 0 1 N N N N N N 59.911 39.405 23.856 5.244 -2.528 5.161 OE4 GDS 20 GDS N4 N4 N 0 1 N N N N N N 61.155 35.599 17.354 2.189 2.197 -3.126 N4 GDS 21 GDS CA4 CA4 C 0 1 N N N N N N 59.895 34.914 17.230 3.210 2.973 -3.835 CA4 GDS 22 GDS C4 C4 C 0 1 N N N N N N 59.646 34.251 18.564 4.213 2.035 -4.456 C4 GDS 23 GDS OE5 OE5 O 0 1 N N N N N N 59.569 32.999 18.602 4.088 0.841 -4.320 OE5 GDS 24 GDS OE6 OE6 O 0 1 N N N N N N 59.570 34.989 19.579 5.245 2.527 -5.160 OE6 GDS 25 GDS C5 C5 C 0 1 N N N N N N 62.004 35.659 16.340 1.183 2.829 -2.490 C5 GDS 26 GDS O5 O5 O 0 1 N N N N N N 62.042 34.825 15.428 1.123 4.040 -2.504 O5 GDS 27 GDS CA5 CA5 C 0 1 N N R N N N 63.252 36.404 16.720 0.134 2.031 -1.760 CA5 GDS 28 GDS N5 N5 N 0 1 N N N N N N 64.415 35.560 16.378 -0.036 0.733 -2.417 N5 GDS 29 GDS CB5 CB5 C 0 1 N N N N N N 63.267 37.846 16.128 0.573 1.815 -0.311 CB5 GDS 30 GDS SG5 SG5 S 0 1 N N N N N N 64.005 39.032 17.314 -0.689 0.854 0.566 SG5 GDS 31 GDS CA6 CA6 C 0 1 N N S N N N 68.697 35.063 17.021 -2.372 -1.986 -5.849 CA6 GDS 32 GDS C6 C6 C 0 1 N N N N N N 69.028 36.118 16.011 -3.435 -1.875 -6.911 C6 GDS 33 GDS OE7 OE7 O 0 1 N N N N N N 68.869 37.303 16.346 -3.132 -1.571 -8.040 OE7 GDS 34 GDS OE8 OE8 O 0 1 N N N N N N 69.480 35.752 14.916 -4.720 -2.115 -6.603 OE8 GDS 35 GDS N6 N6 N 0 1 N N N N N N 68.896 35.694 18.337 -1.103 -2.392 -6.466 N6 GDS 36 GDS CB6 CB6 C 0 1 N N N N N N 67.260 34.523 16.880 -2.194 -0.630 -5.162 CB6 GDS 37 GDS CG6 CG6 C 0 1 N N N N N N 66.533 34.794 15.556 -1.115 -0.742 -4.084 CG6 GDS 38 GDS CD6 CD6 C 0 1 N N N N N N 65.502 35.930 15.696 -0.940 0.592 -3.407 CD6 GDS 39 GDS O6 O6 O 0 1 N N N N N N 65.612 37.031 15.078 -1.612 1.540 -3.754 O6 GDS 40 GDS HN11 1HN1 H 0 0 N N N N N N 65.274 35.898 22.504 -0.402 2.353 5.742 HN11 GDS 41 GDS HN12 2HN1 H 0 0 N N N N N N 64.130 36.807 23.335 -0.866 1.678 7.138 HN12 GDS 42 GDS HA1 HA1 H 0 1 N N N N N N 66.775 37.869 22.464 -2.672 2.731 5.110 HA1 GDS 43 GDS HO2 HO2 H 0 1 N N N N N N 64.379 39.883 24.897 -5.402 2.045 7.284 HO2 GDS 44 GDS HB11 1HB1 H 0 0 N N N N N N 65.238 39.269 20.779 -1.895 -0.113 5.900 HB11 GDS 45 GDS HB12 2HB1 H 0 0 N N N N N N 65.865 37.741 20.334 -3.137 0.329 4.703 HB12 GDS 46 GDS HG11 1HG1 H 0 0 N N N N N N 63.697 36.962 19.927 -1.415 1.487 3.346 HG11 GDS 47 GDS HG12 2HG1 H 0 0 N N N N N N 63.358 37.003 21.596 -0.174 1.044 4.542 HG12 GDS 48 GDS HN2 HN2 H 0 1 N N N N N N 64.224 39.867 20.019 0.500 0.025 2.140 HN2 GDS 49 GDS HA2 HA2 H 0 1 N N N N N N 63.315 41.935 19.975 -0.811 -2.573 1.776 HA2 GDS 50 GDS HB21 1HB2 H 0 0 N N N N N N 61.160 40.469 18.203 1.518 -1.273 0.295 HB21 GDS 51 GDS HB22 2HB2 H 0 0 N N N N N N 61.471 42.161 18.079 0.700 -2.781 -0.177 HB22 GDS 52 GDS HN3 HN3 H 0 1 N N N N N N 61.254 39.995 21.551 2.237 -1.229 3.115 HN3 GDS 53 GDS HA31 1HA3 H 0 0 N N N N N N 59.665 42.419 22.488 2.735 -3.568 4.617 HA31 GDS 54 GDS HA32 2HA3 H 0 0 N N N N N N 58.733 41.131 21.876 3.716 -3.635 3.133 HA32 GDS 55 GDS HO4 HO4 H 0 1 N N N N N N 59.924 38.989 24.710 5.887 -1.926 5.559 HO4 GDS 56 GDS HN4 HN4 H 0 1 N N N N N N 61.462 36.067 18.206 2.238 1.228 -3.115 HN4 GDS 57 GDS HA41 1HA4 H 0 0 N N N N N N 59.060 35.575 16.900 2.736 3.568 -4.616 HA41 GDS 58 GDS HA42 2HA4 H 0 0 N N N N N N 59.856 34.207 16.368 3.717 3.634 -3.133 HA42 GDS 59 GDS HO6 HO6 H 0 1 N N N N N N 59.413 34.572 20.418 5.888 1.925 -5.558 HO6 GDS 60 GDS HA5 HA5 H 0 1 N N N N N N 63.294 36.585 17.819 -0.811 2.573 -1.776 HA5 GDS 61 GDS HN5 HN5 H 0 1 N N N N N N 64.476 34.579 16.652 0.501 -0.025 -2.140 HN5 GDS 62 GDS HB51 1HB5 H 0 0 N N N N N N 63.780 37.879 15.138 0.700 2.780 0.177 HB51 GDS 63 GDS HB52 2HB5 H 0 0 N N N N N N 62.250 38.168 15.802 1.519 1.272 -0.295 HB52 GDS 64 GDS HA6 HA6 H 0 1 N N N N N N 69.352 34.172 16.875 -2.672 -2.730 -5.111 HA6 GDS 65 GDS HO8 HO8 H 0 1 N N N N N N 69.690 36.421 14.275 -5.402 -2.044 -7.285 HO8 GDS 66 GDS HN61 1HN6 H 0 0 N N N N N N 68.670 34.975 19.024 -0.866 -1.678 -7.139 HN61 GDS 67 GDS HN62 2HN6 H 0 0 N N N N N N 68.367 36.557 18.460 -0.402 -2.353 -5.742 HN62 GDS 68 GDS HB61 1HB6 H 0 0 N N N N N N 67.254 33.427 17.087 -3.136 -0.328 -4.704 HB61 GDS 69 GDS HB62 2HB6 H 0 0 N N N N N N 66.639 34.898 17.726 -1.894 0.113 -5.900 HB62 GDS 70 GDS HG61 1HG6 H 0 0 N N N N N N 67.253 34.998 14.730 -0.173 -1.044 -4.542 HG61 GDS 71 GDS HG62 2HG6 H 0 0 N N N N N N 66.064 33.866 15.151 -1.415 -1.487 -3.346 HG62 GDS 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GDS N1 CA1 SING N N 1 GDS N1 HN11 SING N N 2 GDS N1 HN12 SING N N 3 GDS CA1 C1 SING N N 4 GDS CA1 CB1 SING N N 5 GDS CA1 HA1 SING N N 6 GDS C1 OE1 DOUB N N 7 GDS C1 OE2 SING N N 8 GDS OE2 HO2 SING N N 9 GDS CB1 CG1 SING N N 10 GDS CB1 HB11 SING N N 11 GDS CB1 HB12 SING N N 12 GDS CG1 CD1 SING N N 13 GDS CG1 HG11 SING N N 14 GDS CG1 HG12 SING N N 15 GDS CD1 O1 DOUB N N 16 GDS CD1 N2 SING N N 17 GDS N2 CA2 SING N N 18 GDS N2 HN2 SING N N 19 GDS CA2 C2 SING N N 20 GDS CA2 CB2 SING N N 21 GDS CA2 HA2 SING N N 22 GDS C2 O2 DOUB N N 23 GDS C2 N3 SING N N 24 GDS CB2 SG2 SING N N 25 GDS CB2 HB21 SING N N 26 GDS CB2 HB22 SING N N 27 GDS SG2 SG5 SING N N 28 GDS N3 CA3 SING N N 29 GDS N3 HN3 SING N N 30 GDS CA3 C3 SING N N 31 GDS CA3 HA31 SING N N 32 GDS CA3 HA32 SING N N 33 GDS C3 OE3 DOUB N N 34 GDS C3 OE4 SING N N 35 GDS OE4 HO4 SING N N 36 GDS N4 CA4 SING N N 37 GDS N4 C5 SING N N 38 GDS N4 HN4 SING N N 39 GDS CA4 C4 SING N N 40 GDS CA4 HA41 SING N N 41 GDS CA4 HA42 SING N N 42 GDS C4 OE5 DOUB N N 43 GDS C4 OE6 SING N N 44 GDS OE6 HO6 SING N N 45 GDS C5 O5 DOUB N N 46 GDS C5 CA5 SING N N 47 GDS CA5 N5 SING N N 48 GDS CA5 CB5 SING N N 49 GDS CA5 HA5 SING N N 50 GDS N5 CD6 SING N N 51 GDS N5 HN5 SING N N 52 GDS CB5 SG5 SING N N 53 GDS CB5 HB51 SING N N 54 GDS CB5 HB52 SING N N 55 GDS CA6 C6 SING N N 56 GDS CA6 N6 SING N N 57 GDS CA6 CB6 SING N N 58 GDS CA6 HA6 SING N N 59 GDS C6 OE7 DOUB N N 60 GDS C6 OE8 SING N N 61 GDS OE8 HO8 SING N N 62 GDS N6 HN61 SING N N 63 GDS N6 HN62 SING N N 64 GDS CB6 CG6 SING N N 65 GDS CB6 HB61 SING N N 66 GDS CB6 HB62 SING N N 67 GDS CG6 CD6 SING N N 68 GDS CG6 HG61 SING N N 69 GDS CG6 HG62 SING N N 70 GDS CD6 O6 DOUB N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GDS SMILES ACDLabs 10.04 "O=C(NC(C(=O)NCC(=O)O)CSSCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)CCC(C(=O)O)N" GDS SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCC(=O)N[C@@H](CSSC[C@H](NC(=O)CC[C@H](N)C(O)=O)C(=O)NCC(O)=O)C(=O)NCC(O)=O)C(O)=O" GDS SMILES CACTVS 3.341 "N[CH](CCC(=O)N[CH](CSSC[CH](NC(=O)CC[CH](N)C(O)=O)C(=O)NCC(O)=O)C(=O)NCC(O)=O)C(O)=O" GDS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)N[C@@H](CSSC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N)C(=O)NCC(=O)O)[C@@H](C(=O)O)N" GDS SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(=O)NC(CSSCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)C(=O)NCC(=O)O)C(C(=O)O)N" GDS InChI InChI 1.03 "InChI=1S/C20H32N6O12S2/c21-9(19(35)36)1-3-13(27)25-11(17(33)23-5-15(29)30)7-39-40-8-12(18(34)24-6-16(31)32)26-14(28)4-2-10(22)20(37)38/h9-12H,1-8,21-22H2,(H,23,33)(H,24,34)(H,25,27)(H,26,28)(H,29,30)(H,31,32)(H,35,36)(H,37,38)/t9-,10-,11-,12-/m0/s1" GDS InChIKey InChI 1.03 YPZRWBKMTBYPTK-BJDJZHNGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GDS "SYSTEMATIC NAME" ACDLabs 10.04 ;(2S,2'S)-5,5'-[disulfanediylbis({(2R)-3-[(carboxymethyl)amino]-3-oxopropane-1,2-diyl}imino)]bis(2-amino-5-oxopentanoic acid) (non-preferred name) ; GDS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-[[(2R)-3-[(2R)-2-[[(4S)-4-amino-5-hydroxy-5-oxo-pentanoyl]amino]-3-(carboxymethylamino)-3-oxo-propyl]disulfanyl-1-(carboxymethylamino)-1-oxo-propan-2-yl]amino]-5-oxo-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GDS "Create component" 1999-07-08 RCSB GDS "Modify descriptor" 2011-06-04 RCSB GDS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GDS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #