data_GDV # _chem_comp.id GDV _chem_comp.name "(5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H21 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2006-10-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GDV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2J47 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GDV O1 O1 O 0 1 N N N 3.010 -6.448 34.300 4.885 -5.565 0.521 O1 GDV 1 GDV C10 C10 C 0 1 N N N 3.214 -7.607 34.627 4.561 -4.827 1.445 C10 GDV 2 GDV C12 C12 C 0 1 N N N 4.059 -7.939 35.840 4.964 -5.174 2.839 C12 GDV 3 GDV N4 N4 N 0 1 N N N 2.723 -8.707 34.016 3.832 -3.655 1.339 N4 GDV 4 GDV C2 C2 C 0 1 N N S 1.883 -8.675 32.827 3.344 -3.136 0.085 C2 GDV 5 GDV C3 C3 C 0 1 N N R 2.734 -8.322 31.595 4.372 -2.206 -0.563 C3 GDV 6 GDV O3 O3 O 0 1 N N N 3.157 -9.541 30.962 5.379 -3.000 -1.194 O3 GDV 7 GDV C4 C4 C 0 1 N N R 1.961 -7.337 30.665 3.724 -1.319 -1.636 C4 GDV 8 GDV O4 O4 O 0 1 N N N 2.791 -7.059 29.550 4.741 -0.449 -2.139 O4 GDV 9 GDV C5 C5 C 0 1 N N R 1.636 -6.005 31.451 2.555 -0.473 -1.083 C5 GDV 10 GDV C6 C6 C 0 1 N N N 1.076 -4.932 30.498 1.776 0.175 -2.232 C6 GDV 11 GDV O5 O5 O 0 1 N N N -0.040 -5.397 29.737 1.275 -0.851 -3.069 O5 GDV 12 GDV C1 C1 C 0 1 Y N N 0.677 -7.748 32.917 2.028 -2.473 0.304 C1 GDV 13 GDV N1 N1 N 1 1 Y N N 0.629 -6.529 32.346 1.677 -1.282 -0.218 N1 GDV 14 GDV C7 C7 C 0 1 Y N N -0.628 -6.048 32.632 0.421 -0.949 0.268 C7 GDV 15 GDV C8 C8 C 0 1 Y N N -1.264 -6.987 33.431 -0.012 -2.000 1.026 C8 GDV 16 GDV N2 N2 N 0 1 Y N N -0.431 -8.032 33.602 0.992 -2.929 1.020 N2 GDV 17 GDV C9 C9 C 0 1 N N N -2.544 -6.917 33.983 -1.247 -2.125 1.696 C9 GDV 18 GDV O2 O2 O 0 1 N N N -3.238 -5.944 33.779 -2.157 -1.252 1.645 O2 GDV 19 GDV N3 N3 N 0 1 N N N -2.962 -8.002 34.685 -1.460 -3.329 2.425 N3 GDV 20 GDV C11 C11 C 0 1 Y N N -4.207 -8.107 35.304 -2.591 -3.761 3.162 C11 GDV 21 GDV C17 C17 C 0 1 Y N N -4.902 -9.319 35.425 -3.704 -2.941 3.232 C17 GDV 22 GDV C16 C16 C 0 1 Y N N -6.122 -9.403 36.122 -4.817 -3.366 3.957 C16 GDV 23 GDV C15 C15 C 0 1 Y N N -6.661 -8.264 36.718 -4.800 -4.604 4.600 C15 GDV 24 GDV C14 C14 C 0 1 Y N N -5.987 -7.053 36.610 -3.669 -5.416 4.519 C14 GDV 25 GDV C13 C13 C 0 1 Y N N -4.757 -6.975 35.921 -2.555 -4.991 3.794 C13 GDV 26 GDV H121 1H12 H 0 0 N N N 4.245 -8.997 36.139 4.574 -6.153 3.159 H121 GDV 27 GDV H122 2H12 H 0 0 N N N 3.630 -7.402 36.718 6.058 -5.244 2.956 H122 GDV 28 GDV H123 3H12 H 0 0 N N N 5.046 -7.434 35.723 4.636 -4.464 3.615 H123 GDV 29 GDV H4 H4 H 0 1 N N N 2.955 -9.618 34.412 3.629 -3.134 2.190 H4 GDV 30 GDV H2 H2 H 0 1 N N N 1.493 -9.708 32.672 3.129 -3.999 -0.554 H2 GDV 31 GDV H3 H3 H 0 1 N N N 3.648 -7.796 31.957 4.876 -1.581 0.184 H3 GDV 32 GDV HA HA H 0 1 N N N 3.682 -9.323 30.201 4.921 -3.744 -1.615 HA GDV 33 GDV HB HB H 0 1 N N N 1.013 -7.811 30.320 3.388 -1.941 -2.475 HB GDV 34 GDV HC HC H 0 1 N N N 2.320 -6.459 28.983 5.369 -1.012 -2.615 HC GDV 35 GDV H5 H5 H 0 1 N N N 2.526 -5.632 32.010 2.955 0.334 -0.455 H5 GDV 36 GDV H6C1 1H6C H 0 0 N N N 1.876 -4.533 29.831 2.436 0.821 -2.809 H6C1 GDV 37 GDV H6C2 2H6C H 0 0 N N N 0.821 -3.999 31.053 0.944 0.756 -1.836 H6C2 GDV 38 GDV HD HD H 0 1 N N N -0.385 -4.735 29.149 1.908 -0.959 -3.799 HD GDV 39 GDV H7 H7 H 0 1 N N N -1.053 -5.090 32.288 0.006 -0.000 -0.011 H7 GDV 40 GDV HE HE H 0 1 N N N -0.612 -8.874 34.148 0.971 -3.820 1.510 HE GDV 41 GDV HF HF H 0 1 N N N -2.323 -8.793 34.765 -0.678 -3.980 2.416 HF GDV 42 GDV H17 H17 H 0 1 N N N -4.483 -10.228 34.963 -3.730 -1.975 2.734 H17 GDV 43 GDV H16 H16 H 0 1 N N N -6.650 -10.368 36.196 -5.698 -2.733 4.020 H16 GDV 44 GDV H15 H15 H 0 1 N N N -7.614 -8.323 37.270 -5.666 -4.935 5.165 H15 GDV 45 GDV H14 H14 H 0 1 N N N -6.417 -6.145 37.066 -3.655 -6.379 5.020 H14 GDV 46 GDV H13 H13 H 0 1 N N N -4.222 -6.012 35.868 -1.679 -5.633 3.737 H13 GDV 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GDV O1 C10 DOUB N N 1 GDV C10 C12 SING N N 2 GDV C10 N4 SING N N 3 GDV C12 H121 SING N N 4 GDV C12 H122 SING N N 5 GDV C12 H123 SING N N 6 GDV N4 C2 SING N N 7 GDV N4 H4 SING N N 8 GDV C2 C3 SING N N 9 GDV C2 C1 SING N N 10 GDV C2 H2 SING N N 11 GDV C3 O3 SING N N 12 GDV C3 C4 SING N N 13 GDV C3 H3 SING N N 14 GDV O3 HA SING N N 15 GDV C4 O4 SING N N 16 GDV C4 C5 SING N N 17 GDV C4 HB SING N N 18 GDV O4 HC SING N N 19 GDV C5 C6 SING N N 20 GDV C5 N1 SING N N 21 GDV C5 H5 SING N N 22 GDV C6 O5 SING N N 23 GDV C6 H6C1 SING N N 24 GDV C6 H6C2 SING N N 25 GDV O5 HD SING N N 26 GDV C1 N1 DOUB Y N 27 GDV C1 N2 SING Y N 28 GDV N1 C7 SING Y N 29 GDV C7 C8 DOUB Y N 30 GDV C7 H7 SING N N 31 GDV C8 N2 SING Y N 32 GDV C8 C9 SING N N 33 GDV N2 HE SING N N 34 GDV C9 O2 DOUB N N 35 GDV C9 N3 SING N N 36 GDV N3 C11 SING N N 37 GDV N3 HF SING N N 38 GDV C11 C17 SING Y N 39 GDV C11 C13 DOUB Y N 40 GDV C17 C16 DOUB Y N 41 GDV C17 H17 SING N N 42 GDV C16 C15 SING Y N 43 GDV C16 H16 SING N N 44 GDV C15 C14 DOUB Y N 45 GDV C15 H15 SING N N 46 GDV C14 C13 SING Y N 47 GDV C14 H14 SING N N 48 GDV C13 H13 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GDV SMILES ACDLabs 10.04 "O=C(c1c[n+]2c(n1)C(NC(=O)C)C(O)C(O)C2CO)Nc3ccccc3" GDV SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)[n+]2cc([nH]c12)C(=O)Nc3ccccc3" GDV SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)[n+]2cc([nH]c12)C(=O)Nc3ccccc3" GDV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@H]1c2[nH]c(c[n+]2[C@@H]([C@H]([C@@H]1O)O)CO)C(=O)Nc3ccccc3" GDV SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1c2[nH]c(c[n+]2C(C(C1O)O)CO)C(=O)Nc3ccccc3" GDV InChI InChI 1.03 "InChI=1S/C17H20N4O5/c1-9(23)18-13-15(25)14(24)12(8-22)21-7-11(20-16(13)21)17(26)19-10-5-3-2-4-6-10/h2-7,12-15,22,24-25H,8H2,1H3,(H2,18,19,23,26)/p+1/t12-,13-,14-,15-/m1/s1" GDV InChIKey InChI 1.03 WWSQBPPKQTUEDT-KBUPBQIOSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GDV "SYSTEMATIC NAME" ACDLabs 10.04 "(5R,6R,7R,8S)-8-(acetylamino)-6,7-dihydroxy-5-(hydroxymethyl)-2-(phenylcarbamoyl)-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium" GDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5R,6R,7R,8S)-8-acetamido-6,7-dihydroxy-5-(hydroxymethyl)-N-phenyl-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GDV "Create component" 2006-10-19 PDBJ GDV "Modify descriptor" 2011-06-04 RCSB #