data_GE1 # _chem_comp.id GE1 _chem_comp.name "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;3,4-DIDEOXY-2,6-AMINO-ALPHA-D GALACTOPYRANOSE; 2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexose; 2,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose; 2,6-diamino-2,3,4,6-tetradeoxy-erythro-hexose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-04 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GE1 "3,4-DIDEOXY-2,6-AMINO-ALPHA-D GALACTOPYRANOSE" PDB ? 2 GE1 "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexose" PDB ? 3 GE1 "2,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose" PDB ? 4 GE1 "2,6-diamino-2,3,4,6-tetradeoxy-erythro-hexose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GE1 C5 C5 C 0 1 N N S 9.554 1.870 -2.768 -0.328 0.217 1.024 C5 GE1 1 GE1 O O O 0 1 N N N 8.204 1.925 -3.336 0.591 -0.755 0.532 O GE1 2 GE1 C1 C1 C 0 1 N N S 7.230 2.726 -2.597 0.963 -0.368 -0.788 C1 GE1 3 GE1 O1 O1 O 0 1 N Y N 7.686 4.109 -2.508 1.410 0.988 -0.778 O1 GE1 4 GE1 C2 C2 C 0 1 N N R 7.059 2.114 -1.178 -0.241 -0.499 -1.724 C2 GE1 5 GE1 N2 N2 N 0 1 N N N 6.080 2.852 -0.354 0.151 -0.127 -3.089 N2 GE1 6 GE1 C3 C3 C 0 1 N N N 8.430 2.028 -0.455 -1.354 0.435 -1.238 C3 GE1 7 GE1 C4 C4 C 0 1 N N N 9.495 1.317 -1.318 -1.638 0.134 0.237 C4 GE1 8 GE1 C6 C6 C 0 1 N N N 10.518 1.032 -3.633 -0.606 -0.048 2.505 C6 GE1 9 GE1 N1 N1 N 0 1 N N N 10.331 1.178 -5.086 0.649 0.034 3.262 N1 GE1 10 GE1 H5 H5 H 0 1 N N N 9.958 2.899 -2.742 0.100 1.212 0.909 H5 GE1 11 GE1 H1 H1 H 0 1 N N N 6.262 2.685 -3.140 1.768 -1.012 -1.142 H1 GE1 12 GE1 HO1 HO1 H 0 1 N N N 7.052 4.629 -2.027 2.168 1.028 -0.178 HO1 GE1 13 GE1 H2 H2 H 0 1 N N N 6.672 1.086 -1.302 -0.599 -1.528 -1.715 H2 GE1 14 GE1 HN21 HN21 H 0 0 N N N 5.160 2.839 -0.807 0.882 -0.765 -3.365 HN21 GE1 15 GE1 HN22 HN22 H 0 0 N N N 5.951 2.380 0.548 -0.641 -0.320 -3.682 HN22 GE1 16 GE1 H31 H31 H 0 1 N N N 8.794 3.040 -0.194 -2.256 0.266 -1.826 H31 GE1 17 GE1 H32 H32 H 0 1 N N N 8.328 1.493 0.510 -1.034 1.472 -1.345 H32 GE1 18 GE1 H41 H41 H 0 1 N N N 10.485 1.379 -0.830 -2.057 -0.867 0.331 H41 GE1 19 GE1 H42 H42 H 0 1 N N N 9.243 0.242 -1.348 -2.346 0.865 0.629 H42 GE1 20 GE1 H61 H61 H 0 1 N N N 10.443 -0.038 -3.381 -1.035 -1.043 2.621 H61 GE1 21 GE1 H62 H62 H 0 1 N N N 11.553 1.314 -3.381 -1.307 0.695 2.882 H62 GE1 22 GE1 HN11 HN11 H 0 0 N N N 10.419 2.164 -5.355 0.419 -0.147 4.227 HN11 GE1 23 GE1 HN12 HN12 H 0 0 N N N 9.377 0.905 -5.347 1.225 -0.734 2.952 HN12 GE1 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GE1 C5 O SING N N 1 GE1 C5 C4 SING N N 2 GE1 C5 C6 SING N N 3 GE1 C5 H5 SING N N 4 GE1 O C1 SING N N 5 GE1 C1 O1 SING N N 6 GE1 C1 C2 SING N N 7 GE1 C1 H1 SING N N 8 GE1 O1 HO1 SING N N 9 GE1 C2 N2 SING N N 10 GE1 C2 C3 SING N N 11 GE1 C2 H2 SING N N 12 GE1 N2 HN21 SING N N 13 GE1 N2 HN22 SING N N 14 GE1 C3 C4 SING N N 15 GE1 C3 H31 SING N N 16 GE1 C3 H32 SING N N 17 GE1 C4 H41 SING N N 18 GE1 C4 H42 SING N N 19 GE1 C6 N1 SING N N 20 GE1 C6 H61 SING N N 21 GE1 C6 H62 SING N N 22 GE1 N1 HN11 SING N N 23 GE1 N1 HN12 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GE1 SMILES ACDLabs 10.04 "OC1OC(CN)CCC1N" GE1 SMILES_CANONICAL CACTVS 3.341 "NC[C@@H]1CC[C@@H](N)[C@@H](O)O1" GE1 SMILES CACTVS 3.341 "NC[CH]1CC[CH](N)[CH](O)O1" GE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C[C@H]([C@H](O[C@@H]1CN)O)N" GE1 SMILES "OpenEye OEToolkits" 1.5.0 "C1CC(C(OC1CN)O)N" GE1 InChI InChI 1.03 "InChI=1S/C6H14N2O2/c7-3-4-1-2-5(8)6(9)10-4/h4-6,9H,1-3,7-8H2/t4-,5+,6-/m0/s1" GE1 InChIKey InChI 1.03 FGFITZOBEYBNGG-JKUQZMGJSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GE1 "SYSTEMATIC NAME" ACDLabs 10.04 "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose" GE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,6S)-3-amino-6-(aminomethyl)oxan-2-ol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GE1 "CARBOHYDRATE ISOMER" D PDB ? GE1 "CARBOHYDRATE RING" pyranose PDB ? GE1 "CARBOHYDRATE ANOMER" alpha PDB ? GE1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GE1 "Create component" 1999-08-04 RCSB GE1 "Modify descriptor" 2011-06-04 RCSB GE1 "Other modification" 2020-07-03 RCSB GE1 "Modify name" 2020-07-17 RCSB GE1 "Modify synonyms" 2020-07-17 RCSB GE1 "Modify linking type" 2020-07-17 RCSB ##