data_GE6
#
_chem_comp.id GE6
_chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H15 F N3 O15 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-21
_chem_comp.pdbx_modified_date 2020-08-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.157
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GE6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7CTT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GE6 C01 C1 C 0 1 N N S 123.725 125.808 127.917 -2.620 3.209 -0.341 C01 GE6 1
GE6 C02 C2 C 0 1 N N R 122.934 127.044 128.181 -3.897 2.342 -0.411 C02 GE6 2
GE6 C03 C3 C 0 1 N N R 121.641 126.701 128.034 -3.374 0.931 -0.759 C03 GE6 3
GE6 C04 C4 C 0 1 N N R 122.795 124.893 127.019 -1.477 2.219 -0.655 C04 GE6 4
GE6 C05 C5 C 0 1 N N N 122.846 123.443 127.600 -0.245 2.542 0.193 C05 GE6 5
GE6 C06 C6 C 0 1 N N N 120.996 125.223 129.809 -4.120 -0.164 1.293 C06 GE6 6
GE6 C07 C7 C 0 1 N N N 120.431 124.993 131.060 -4.848 -1.118 1.964 C07 GE6 7
GE6 C08 C8 C 0 1 N N N 120.009 127.258 131.274 -5.671 -1.978 -0.004 C08 GE6 8
GE6 C09 C9 C 0 1 N N N 119.435 128.444 132.126 -6.509 -2.958 -0.719 C09 GE6 9
GE6 C10 C10 C 0 1 N N N 120.575 127.498 130.014 -4.914 -0.967 -0.746 C10 GE6 10
GE6 F01 F1 F 0 1 N N N 120.370 123.725 131.564 -4.795 -1.160 3.313 F01 GE6 11
GE6 N01 N1 N 0 1 N N N 119.458 129.866 131.592 -7.209 -3.879 -0.026 N01 GE6 12
GE6 N02 N2 N 0 1 N N N 121.048 126.473 129.320 -4.154 -0.090 -0.054 N02 GE6 13
GE6 N03 N3 N 0 1 N N N 119.955 126.019 131.753 -5.599 -1.995 1.319 N03 GE6 14
GE6 O01 O1 O 0 1 N N N 121.607 125.367 127.134 -2.004 0.922 -0.302 O01 GE6 15
GE6 O02 O2 O 0 1 N N N 123.315 128.100 127.168 -4.772 2.821 -1.434 O02 GE6 16
GE6 O03 O3 O 0 1 N N N 124.874 126.110 127.215 -2.668 4.250 -1.319 O03 GE6 17
GE6 O04 O4 O 0 1 N N N 118.984 128.213 133.205 -6.569 -2.935 -1.933 O04 GE6 18
GE6 O05 O5 O 0 1 N N N 120.638 128.884 129.472 -4.959 -0.925 -1.964 O05 GE6 19
GE6 O06 O6 O 0 1 N N N 123.372 122.608 126.709 0.814 1.643 -0.143 O06 GE6 20
GE6 O07 O7 O 0 1 N N N 125.318 121.093 127.837 3.156 0.462 0.032 O07 GE6 21
GE6 O08 O8 O 0 1 N N N 123.629 120.079 126.141 2.105 1.600 2.025 O08 GE6 22
GE6 O09 O9 O 0 1 N N N 122.791 120.722 128.390 2.990 3.081 0.183 O09 GE6 23
GE6 O10 O10 O 0 1 N N N 127.028 121.178 130.005 5.183 -1.084 -0.610 O10 GE6 24
GE6 O11 O11 O 0 1 N N N 125.933 119.191 131.119 6.613 -2.735 -2.074 O11 GE6 25
GE6 O12 O12 O 0 1 N N N 128.326 119.117 130.841 7.732 -0.596 -1.032 O12 GE6 26
GE6 O13 O13 O 0 1 N N N 126.331 123.391 128.737 5.405 0.710 1.151 O13 GE6 27
GE6 O14 O14 O 0 1 N N N 124.640 122.176 130.097 4.039 -1.327 1.745 O14 GE6 28
GE6 O15 O15 O 0 1 N N N 126.821 118.841 128.898 6.985 -2.525 0.414 O15 GE6 29
GE6 P01 P1 P 0 1 N N N 123.753 121.101 127.265 2.263 1.694 0.557 P01 GE6 30
GE6 P02 P2 P 0 1 N N N 125.806 121.997 129.190 4.466 -0.288 0.592 P02 GE6 31
GE6 P03 P3 P 0 1 N N N 127.014 119.530 130.231 6.636 -1.752 -0.799 P03 GE6 32
GE6 H1 H1 H 0 1 N N N 123.942 125.285 128.860 -2.498 3.630 0.657 H1 GE6 33
GE6 H2 H2 H 0 1 N N N 123.149 127.414 129.194 -4.407 2.334 0.553 H2 GE6 34
GE6 H3 H3 H 0 1 N N N 121.081 127.480 127.496 -3.418 0.765 -1.835 H3 GE6 35
GE6 H4 H4 H 0 1 N N N 123.177 124.889 125.988 -1.226 2.251 -1.715 H4 GE6 36
GE6 H5 H5 H 0 1 N N N 121.826 123.115 127.847 0.072 3.567 -0.003 H5 GE6 37
GE6 H6 H6 H 0 1 N N N 123.463 123.438 128.511 -0.492 2.434 1.249 H6 GE6 38
GE6 H7 H7 H 0 1 N N N 121.391 124.399 129.233 -3.517 0.537 1.850 H7 GE6 39
GE6 H10 H10 H 0 1 N N N 119.094 130.614 132.146 -7.161 -3.897 0.942 H10 GE6 40
GE6 H11 H11 H 0 1 N N N 119.838 130.054 130.686 -7.761 -4.523 -0.497 H11 GE6 41
GE6 H12 H12 H 0 1 N N N 122.814 128.891 127.331 -5.083 3.726 -1.294 H12 GE6 42
GE6 H13 H13 H 0 1 N N N 125.437 126.659 127.749 -3.404 4.866 -1.202 H13 GE6 43
GE6 H14 H14 H 0 1 N N N 122.320 119.932 128.152 3.127 3.211 -0.765 H14 GE6 44
GE6 H15 H15 H 0 1 N N N 125.330 118.606 130.676 7.457 -3.173 -2.248 H15 GE6 45
GE6 H16 H16 H 0 1 N N N 128.766 118.506 130.262 7.566 -0.048 -1.812 H16 GE6 46
GE6 H17 H17 H 0 1 N N N 124.463 123.103 130.207 3.423 -2.012 1.448 H17 GE6 47
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GE6 O08 P01 DOUB N N 1
GE6 O06 P01 SING N N 2
GE6 O06 C05 SING N N 3
GE6 C04 O01 SING N N 4
GE6 C04 C05 SING N N 5
GE6 C04 C01 SING N N 6
GE6 O01 C03 SING N N 7
GE6 O02 C02 SING N N 8
GE6 O03 C01 SING N N 9
GE6 P01 O07 SING N N 10
GE6 P01 O09 SING N N 11
GE6 O07 P02 SING N N 12
GE6 C01 C02 SING N N 13
GE6 C03 C02 SING N N 14
GE6 C03 N02 SING N N 15
GE6 O13 P02 DOUB N N 16
GE6 O15 P03 DOUB N N 17
GE6 P02 O10 SING N N 18
GE6 P02 O14 SING N N 19
GE6 N02 C06 SING N N 20
GE6 N02 C10 SING N N 21
GE6 O05 C10 DOUB N N 22
GE6 C06 C07 DOUB N N 23
GE6 O10 P03 SING N N 24
GE6 C10 C08 SING N N 25
GE6 P03 O12 SING N N 26
GE6 P03 O11 SING N N 27
GE6 C07 F01 SING N N 28
GE6 C07 N03 SING N N 29
GE6 C08 N03 DOUB N N 30
GE6 C08 C09 SING N N 31
GE6 N01 C09 SING N N 32
GE6 C09 O04 DOUB N N 33
GE6 C01 H1 SING N N 34
GE6 C02 H2 SING N N 35
GE6 C03 H3 SING N N 36
GE6 C04 H4 SING N N 37
GE6 C05 H5 SING N N 38
GE6 C05 H6 SING N N 39
GE6 C06 H7 SING N N 40
GE6 N01 H10 SING N N 41
GE6 N01 H11 SING N N 42
GE6 O02 H12 SING N N 43
GE6 O03 H13 SING N N 44
GE6 O09 H14 SING N N 45
GE6 O11 H15 SING N N 46
GE6 O12 H16 SING N N 47
GE6 O14 H17 SING N N 48
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GE6 InChI InChI 1.03 "InChI=1S/C10H15FN3O15P3/c11-4-1-14(9(18)5(13-4)8(12)17)10-7(16)6(15)3(27-10)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h1,3,6-7,10,15-16H,2H2,(H2,12,17)(H,22,23)(H,24,25)(H2,19,20,21)/t3-,6-,7-,10-/m1/s1"
GE6 InChIKey InChI 1.03 UUKPXXBDUCDZDA-KAFVXXCXSA-N
GE6 SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=NC(=CN([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O)F"
GE6 SMILES CACTVS 3.385 "NC(=O)C1=NC(=CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)C1=O)F"
GE6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(N=C(C(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)C(=O)N)F"
GE6 SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(N=C(C(=O)N1C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)C(=O)N)F"
#
_pdbx_chem_comp_identifier.comp_id GE6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GE6 "Create component" 2020-08-21 PDBJ
GE6 "Initial release" 2020-09-02 RCSB
##