data_GEF # _chem_comp.id GEF _chem_comp.name "4-[(3R,3aS,6R,6aS)-6-(3-methoxy-4-oxidanyl-phenyl)-1,3,3a,4,6,6a-hexahydrofuro[3,4-c]furan-3-yl]-2-methoxy-phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(-)-pinoresinol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-22 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CS5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GEF CAV C1 C 0 1 N N N -60.347 71.140 4.666 -6.187 0.993 1.803 CAV GEF 1 GEF OAU O1 O 0 1 N N N -59.953 70.599 3.439 -6.198 -0.161 0.959 OAU GEF 2 GEF CAQ C2 C 0 1 Y N N -59.254 71.200 2.443 -5.093 -0.379 0.197 CAQ GEF 3 GEF CAP C3 C 0 1 Y N N -59.097 70.301 1.481 -4.022 0.498 0.260 CAP GEF 4 GEF CAR C4 C 0 1 Y N N -58.727 72.507 2.336 -5.033 -1.486 -0.644 CAR GEF 5 GEF OAZ O2 O 0 1 N N N -58.898 73.456 3.336 -6.079 -2.352 -0.706 OAZ GEF 6 GEF CAS C5 C 0 1 Y N N -58.034 72.783 1.131 -3.905 -1.704 -1.418 CAS GEF 7 GEF CAT C6 C 0 1 Y N N -57.854 71.831 0.108 -2.842 -0.822 -1.355 CAT GEF 8 GEF CAO C7 C 0 1 Y N N -58.465 70.570 0.336 -2.899 0.275 -0.515 CAO GEF 9 GEF CAN C8 C 0 1 N N R -58.516 69.320 -0.426 -1.735 1.230 -0.445 CAN GEF 10 GEF OAM O3 O 0 1 N N N -57.440 68.308 -0.279 -1.175 1.414 -1.755 OAM GEF 11 GEF CAL C9 C 0 1 N N N -56.517 68.864 -0.684 0.241 1.624 -1.581 CAL GEF 12 GEF CAK C10 C 0 1 N N S -57.293 68.885 -1.988 0.633 0.623 -0.468 CAK GEF 13 GEF CAJ C11 C 0 1 N N S -58.498 69.915 -1.835 -0.629 0.641 0.449 CAJ GEF 14 GEF CAH C12 C 0 1 N N N -58.518 69.283 -3.211 -0.241 1.691 1.517 CAH GEF 15 GEF OAI O4 O 0 1 N N N -57.480 68.345 -3.751 1.176 1.493 1.700 OAI GEF 16 GEF CAG C13 C 0 1 N N R -57.734 67.479 -2.637 1.737 1.253 0.399 CAG GEF 17 GEF CAD C14 C 0 1 Y N N -56.888 66.465 -3.026 2.903 0.305 0.511 CAD GEF 18 GEF CAE C15 C 0 1 Y N N -57.453 65.227 -3.332 4.020 0.490 -0.282 CAE GEF 19 GEF CAC C16 C 0 1 Y N N -55.547 66.635 -3.392 2.856 -0.743 1.411 CAC GEF 20 GEF CAB C17 C 0 1 Y N N -54.788 65.589 -3.929 3.924 -1.615 1.517 CAB GEF 21 GEF CAA C18 C 0 1 Y N N -55.362 64.324 -4.196 5.044 -1.439 0.721 CAA GEF 22 GEF OAY O5 O 0 1 N N N -54.737 63.227 -4.732 6.095 -2.297 0.825 OAY GEF 23 GEF CAF C19 C 0 1 Y N N -56.714 64.143 -3.909 5.094 -0.380 -0.180 CAF GEF 24 GEF OAW O6 O 0 1 N N N -57.242 62.889 -4.176 6.194 -0.200 -0.959 OAW GEF 25 GEF CAX C20 C 0 1 N N N -58.634 62.843 -3.825 6.175 0.908 -1.861 CAX GEF 26 GEF H1 H1 H 0 1 N N N -60.900 70.382 5.241 -5.356 0.921 2.505 H1 GEF 27 GEF H2 H2 H 0 1 N N N -59.457 71.452 5.232 -6.070 1.888 1.192 H2 GEF 28 GEF H3 H3 H 0 1 N N N -60.994 72.012 4.491 -7.125 1.048 2.354 H3 GEF 29 GEF H4 H4 H 0 1 N N N -59.497 69.309 1.630 -4.064 1.356 0.915 H4 GEF 30 GEF H5 H5 H 0 1 N N N -58.474 74.267 3.080 -6.738 -2.126 -1.377 H5 GEF 31 GEF H6 H6 H 0 1 N N N -57.624 73.772 0.990 -3.855 -2.562 -2.072 H6 GEF 32 GEF H7 H7 H 0 1 N N N -57.290 72.046 -0.788 -1.963 -0.993 -1.959 H7 GEF 33 GEF H8 H8 H 0 1 N N N -59.490 68.835 -0.265 -2.066 2.188 -0.045 H8 GEF 34 GEF H9 H9 H 0 1 N N N -56.325 69.849 -0.234 0.777 1.400 -2.503 H9 GEF 35 GEF H10 H10 H 0 1 N N N -55.585 68.280 -0.700 0.440 2.647 -1.262 H10 GEF 36 GEF H11 H11 H 0 1 N N N -56.620 69.340 -2.730 0.881 -0.369 -0.847 H11 GEF 37 GEF H12 H12 H 0 1 N N N -58.145 70.957 -1.849 -0.883 -0.336 0.861 H12 GEF 38 GEF H13 H13 H 0 1 N N N -59.467 68.729 -3.263 -0.442 2.699 1.154 H13 GEF 39 GEF H14 H14 H 0 1 N N N -58.546 70.125 -3.918 -0.776 1.506 2.449 H14 GEF 40 GEF H15 H15 H 0 1 N N N -58.786 67.221 -2.446 2.063 2.194 -0.043 H15 GEF 41 GEF H16 H16 H 0 1 N N N -58.502 65.077 -3.123 4.056 1.312 -0.981 H16 GEF 42 GEF H17 H17 H 0 1 N N N -55.085 67.602 -3.256 1.983 -0.882 2.032 H17 GEF 43 GEF H18 H18 H 0 1 N N N -53.742 65.751 -4.144 3.884 -2.434 2.221 H18 GEF 44 GEF H19 H19 H 0 1 N N N -55.358 62.511 -4.803 6.039 -3.060 0.234 H19 GEF 45 GEF H20 H20 H 0 1 N N N -59.035 61.842 -4.043 7.110 0.937 -2.421 H20 GEF 46 GEF H21 H21 H 0 1 N N N -58.749 63.058 -2.752 5.340 0.799 -2.554 H21 GEF 47 GEF H22 H22 H 0 1 N N N -59.185 63.594 -4.410 6.060 1.834 -1.297 H22 GEF 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GEF CAV OAU SING N N 1 GEF OAU CAQ SING N N 2 GEF CAQ CAP DOUB Y N 3 GEF CAQ CAR SING Y N 4 GEF CAP CAO SING Y N 5 GEF CAR OAZ SING N N 6 GEF CAR CAS DOUB Y N 7 GEF CAS CAT SING Y N 8 GEF CAT CAO DOUB Y N 9 GEF CAO CAN SING N N 10 GEF CAN OAM SING N N 11 GEF CAN CAJ SING N N 12 GEF OAM CAL SING N N 13 GEF CAL CAK SING N N 14 GEF CAK CAJ SING N N 15 GEF CAK CAG SING N N 16 GEF CAJ CAH SING N N 17 GEF CAH OAI SING N N 18 GEF OAI CAG SING N N 19 GEF CAG CAD SING N N 20 GEF CAD CAE DOUB Y N 21 GEF CAD CAC SING Y N 22 GEF CAE CAF SING Y N 23 GEF CAC CAB DOUB Y N 24 GEF CAB CAA SING Y N 25 GEF CAA OAY SING N N 26 GEF CAA CAF DOUB Y N 27 GEF CAF OAW SING N N 28 GEF OAW CAX SING N N 29 GEF CAV H1 SING N N 30 GEF CAV H2 SING N N 31 GEF CAV H3 SING N N 32 GEF CAP H4 SING N N 33 GEF OAZ H5 SING N N 34 GEF CAS H6 SING N N 35 GEF CAT H7 SING N N 36 GEF CAN H8 SING N N 37 GEF CAL H9 SING N N 38 GEF CAL H10 SING N N 39 GEF CAK H11 SING N N 40 GEF CAJ H12 SING N N 41 GEF CAH H13 SING N N 42 GEF CAH H14 SING N N 43 GEF CAG H15 SING N N 44 GEF CAE H16 SING N N 45 GEF CAC H17 SING N N 46 GEF CAB H18 SING N N 47 GEF OAY H19 SING N N 48 GEF CAX H20 SING N N 49 GEF CAX H21 SING N N 50 GEF CAX H22 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GEF InChI InChI 1.03 "InChI=1S/C20H22O6/c1-23-17-7-11(3-5-15(17)21)19-13-9-26-20(14(13)10-25-19)12-4-6-16(22)18(8-12)24-2/h3-8,13-14,19-22H,9-10H2,1-2H3/t13-,14-,19+,20+/m1/s1" GEF InChIKey InChI 1.03 HGXBRUKMWQGOIE-NSMLZSOPSA-N GEF SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1O)[C@@H]2OC[C@@H]3[C@H]2CO[C@H]3c4ccc(O)c(OC)c4" GEF SMILES CACTVS 3.385 "COc1cc(ccc1O)[CH]2OC[CH]3[CH]2CO[CH]3c4ccc(O)c(OC)c4" GEF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)[C@H]2[C@@H]3CO[C@H]([C@@H]3CO2)c4ccc(c(c4)OC)O" GEF SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)C2C3COC(C3CO2)c4ccc(c(c4)OC)O" # _pdbx_chem_comp_identifier.comp_id GEF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(3~{R},3~{a}~{S},6~{R},6~{a}~{S})-6-(3-methoxy-4-oxidanyl-phenyl)-1,3,3~{a},4,6,6~{a}-hexahydrofuro[3,4-c]furan-3-yl]-2-methoxy-phenol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GEF _pdbx_chem_comp_synonyms.name "(-)-pinoresinol" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GEF "Create component" 2020-08-22 PDBJ GEF "Modify synonyms" 2021-03-01 PDBE GEF "Initial release" 2021-06-09 RCSB ##