data_GEO
#

_chem_comp.id                                   GEO
_chem_comp.name                                 GEMCITABINE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H11 F2 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2',2'-DIFLUORODEOXYCYTIDINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-04-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       263.198
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GEO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1P62
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GEO  "O5'"   "O5'"   O  0  1  N  N  N  69.971  38.095  20.611  -3.334   2.813  -0.531  "O5'"   GEO   1  
GEO  "C5'"   "C5'"   C  0  1  N  N  N  70.268  37.346  21.792  -3.226   1.662   0.310  "C5'"   GEO   2  
GEO  "C4'"   "C4'"   C  0  1  N  N  R  70.467  35.860  21.371  -2.441   0.570  -0.419  "C4'"   GEO   3  
GEO  "O4'"   "O4'"   O  0  1  N  N  N  69.149  35.328  21.046  -1.070   0.980  -0.614  "O4'"   GEO   4  
GEO  "C1'"   "C1'"   C  0  1  N  N  R  69.210  34.473  19.901  -0.334  -0.243  -0.834  "C1'"   GEO   5  
GEO  N1      N1      N  0  1  Y  N  N  67.922  34.422  19.161   1.090  -0.036  -0.561  N1      GEO   6  
GEO  C6      C6      C  0  1  Y  N  N  67.146  35.472  18.997   2.017  -0.395  -1.493  C6      GEO   7  
GEO  C5      C5      C  0  1  Y  N  N  65.911  35.351  18.582   3.331  -0.194  -1.232  C5      GEO   8  
GEO  C4      C4      C  0  1  Y  N  N  65.456  34.201  18.160   3.703   0.371   0.005  C4      GEO   9  
GEO  N3      N3      N  0  1  Y  N  N  66.250  33.126  18.194   2.765   0.704   0.882  N3      GEO  10  
GEO  C2      C2      C  0  1  Y  N  N  67.498  33.222  18.696   1.476   0.506   0.608  C2      GEO  11  
GEO  O2      O2      O  0  1  N  N  N  68.273  32.128  18.727   0.633   0.821   1.431  O2      GEO  12  
GEO  N4      N4      N  0  1  N  N  N  64.225  34.032  17.639   5.030   0.582   0.298  N4      GEO  13  
GEO  "C2'"   "C2'"   C  0  1  N  N  N  70.386  35.084  19.098  -0.933  -1.252   0.171  "C2'"   GEO  14  
GEO  F1      F1      F  0  1  N  N  N  69.943  36.062  18.337  -0.176  -1.279   1.347  F1      GEO  15  
GEO  F2      F2      F  0  1  N  N  N  70.869  34.206  18.263  -1.005  -2.529  -0.396  F2      GEO  16  
GEO  "C3'"   "C3'"   C  0  1  N  N  R  71.368  35.602  20.169  -2.352  -0.703   0.451  "C3'"   GEO  17  
GEO  "O3'"   "O3'"   O  0  1  N  N  N  72.407  34.586  20.411  -3.344  -1.652   0.055  "O3'"   GEO  18  
GEO  "H5'"   "H5'"   H  0  1  N  N  N  69.849  39.001  20.867  -3.834   3.475  -0.035  "H5'"   GEO  19  
GEO  "H5'1"  "1H5'"  H  0  0  N  N  N  71.136  37.756  22.358  -4.223   1.294   0.551  "H5'1"  GEO  20  
GEO  "H5'2"  "2H5'"  H  0  0  N  N  N  69.499  37.471  22.589  -2.706   1.931   1.229  "H5'2"  GEO  21  
GEO  "H4'"   "H4'"   H  0  1  N  N  N  70.979  35.371  22.232  -2.909   0.342  -1.377  "H4'"   GEO  22  
GEO  "H1'"   "H1'"   H  0  1  N  N  N  69.378  33.397  20.143  -0.478  -0.594  -1.856  "H1'"   GEO  23  
GEO  H6      H6      H  0  1  N  N  N  67.540  36.479  19.212   1.708  -0.831  -2.432  H6      GEO  24  
GEO  H5      H5      H  0  1  N  N  N  65.244  36.230  18.588   4.082  -0.471  -1.957  H5      GEO  25  
GEO  HN41    1HN4    H  0  0  N  N  N  63.869  33.134  17.309   5.282   0.975   1.148  HN41    GEO  26  
GEO  HN42    2HN4    H  0  0  N  N  N  64.129  34.694  16.869   5.714   0.334  -0.344  HN42    GEO  27  
GEO  "H3'"   "H3'"   H  0  1  N  N  N  71.930  36.523  19.890  -2.464  -0.453   1.506  "H3'"   GEO  28  
GEO  H1      H1      H  0  1  N  N  N  72.968  34.425  19.661  -3.240  -2.422   0.630  H1      GEO  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GEO  "O5'"  "C5'"   SING  N  N   1  
GEO  "O5'"  "H5'"   SING  N  N   2  
GEO  "C5'"  "C4'"   SING  N  N   3  
GEO  "C5'"  "H5'1"  SING  N  N   4  
GEO  "C5'"  "H5'2"  SING  N  N   5  
GEO  "C4'"  "O4'"   SING  N  N   6  
GEO  "C4'"  "C3'"   SING  N  N   7  
GEO  "C4'"  "H4'"   SING  N  N   8  
GEO  "O4'"  "C1'"   SING  N  N   9  
GEO  "C1'"  N1      SING  N  N  10  
GEO  "C1'"  "C2'"   SING  N  N  11  
GEO  "C1'"  "H1'"   SING  N  N  12  
GEO  N1     C6      SING  Y  N  13  
GEO  N1     C2      SING  Y  N  14  
GEO  C6     C5      DOUB  Y  N  15  
GEO  C6     H6      SING  N  N  16  
GEO  C5     C4      SING  Y  N  17  
GEO  C5     H5      SING  N  N  18  
GEO  C4     N3      DOUB  Y  N  19  
GEO  C4     N4      SING  N  N  20  
GEO  N3     C2      SING  Y  N  21  
GEO  C2     O2      DOUB  N  N  22  
GEO  N4     HN41    SING  N  N  23  
GEO  N4     HN42    SING  N  N  24  
GEO  "C2'"  F1      SING  N  N  25  
GEO  "C2'"  F2      SING  N  N  26  
GEO  "C2'"  "C3'"   SING  N  N  27  
GEO  "C3'"  "O3'"   SING  N  N  28  
GEO  "C3'"  "H3'"   SING  N  N  29  
GEO  "O3'"  H1      SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GEO  SMILES            ACDLabs               10.04  "O=C1N=C(N)C=CN1C2OC(C(O)C2(F)F)CO"  
GEO  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)C2(F)F"  
GEO  SMILES            CACTVS                3.341  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)C2(F)F"  
GEO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)[C@H]2C([C@@H]([C@H](O2)CO)O)(F)F"  
GEO  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)(F)F"  
GEO  InChI             InChI                 1.03   "InChI=1S/C9H11F2N3O4/c10-9(11)6(16)4(3-15)18-7(9)14-2-1-5(12)13-8(14)17/h1-2,4,6-7,15-16H,3H2,(H2,12,13,17)/t4-,6-,7-/m1/s1"  
GEO  InChIKey          InChI                 1.03   SDUQYLNIPVEERB-QPPQHZFASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GEO  "SYSTEMATIC NAME"  ACDLabs               10.04  "2'-deoxy-2',2'-difluorocytidine"  
GEO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "4-amino-1-[(2R,4R,5R)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GEO  "Create component"   2003-04-29  RCSB  
GEO  "Modify descriptor"  2011-06-04  RCSB  
GEO  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GEO
_pdbx_chem_comp_synonyms.name        "2',2'-DIFLUORODEOXYCYTIDINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##