data_GFF
#
_chem_comp.id GFF
_chem_comp.name "2'-DEOXY-5'-O-[({[DIFLUORO(PHOSPHONO)METHYL](HYDROXY)PHOSPHORYL}OXY)(HYDROXY)PHOSPHORYL]GUANOSINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H16 F2 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-10-25
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 541.189
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GFF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ISO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GFF P1 P1 P 0 1 N N R 5.027 5.027 14.619 1.576 -1.248 -4.965 P1 GFF 1
GFF O1A O1A O 0 1 N N N 3.910 4.958 15.586 0.858 -2.694 -5.058 O1A GFF 2
GFF O2A O2A O 0 1 N N N 6.416 5.181 15.131 2.547 -0.956 -6.071 O2A GFF 3
GFF O3A O3A O 0 1 N N N 4.936 3.798 13.738 0.329 -0.230 -4.848 O3A GFF 4
GFF "O5'" "O5'" O 0 1 N N N 4.733 6.281 13.675 2.205 -1.233 -3.473 "O5'" GFF 5
GFF P2 P2 P 0 1 N N S 3.865 2.733 13.644 -0.850 0.162 -5.879 P2 GFF 6
GFF O1B O1B O 0 1 N N N 3.844 2.281 12.224 -1.750 -1.181 -5.843 O1B GFF 7
GFF O2B O2B O 0 1 N N N 2.593 3.113 14.304 -0.394 0.574 -7.247 O2B GFF 8
GFF C3B C3B C 0 1 N N N 4.533 1.252 14.578 -1.812 1.329 -5.024 C3B GFF 9
GFF F1B F1B F 0 1 N N N 4.191 0.132 13.872 -2.868 1.477 -5.855 F1B GFF 10
GFF F2B F2B F 0 1 N N N 5.896 1.358 14.597 -1.052 2.442 -5.143 F2B GFF 11
GFF P3 P3 P 0 1 N N N 3.922 1.114 16.351 -2.554 1.556 -3.467 P3 GFF 12
GFF O1G O1G O 0 1 N N N 3.530 2.471 16.815 -3.551 0.291 -3.332 O1G GFF 13
GFF O2G O2G O 0 1 N N N 4.955 0.351 17.115 -3.211 2.891 -3.273 O2G GFF 14
GFF O3G O3G O 0 1 N N N 2.708 0.268 16.254 -1.382 1.217 -2.407 O3G GFF 15
GFF "C5'" "C5'" C 0 1 N N N 3.472 6.419 13.025 1.348 -1.500 -2.377 "C5'" GFF 16
GFF "C4'" "C4'" C 0 1 N N R 3.657 6.560 11.533 2.156 -1.432 -1.088 "C4'" GFF 17
GFF "O4'" "O4'" O 0 1 N N N 4.501 7.691 11.255 2.678 -0.093 -0.958 "O4'" GFF 18
GFF "C1'" "C1'" C 0 1 N N R 5.202 7.461 10.036 2.101 0.516 0.211 "C1'" GFF 19
GFF N9 N9 N 0 1 Y N N 6.631 7.624 10.288 1.818 1.923 -0.049 N9 GFF 20
GFF C4 C4 C 0 1 Y N N 7.549 8.123 9.399 1.882 2.959 0.840 C4 GFF 21
GFF N3 N3 N 0 1 N N N 7.273 8.599 8.168 2.225 2.866 2.144 N3 GFF 22
GFF C2 C2 C 0 1 N N N 8.363 8.987 7.533 2.203 4.026 2.765 C2 GFF 23
GFF N2 N2 N 0 1 N N N 8.254 9.530 6.300 2.519 4.145 4.093 N2 GFF 24
GFF N1 N1 N 0 1 N N N 9.635 8.885 8.061 1.853 5.233 2.115 N1 GFF 25
GFF C6 C6 C 0 1 N N N 9.939 8.388 9.327 1.494 5.351 0.765 C6 GFF 26
GFF O6 O6 O 0 1 N N N 11.117 8.320 9.699 1.191 6.394 0.200 O6 GFF 27
GFF C5 C5 C 0 1 Y N N 8.772 8.001 10.027 1.528 4.070 0.114 C5 GFF 28
GFF N7 N7 N 0 1 Y N N 8.621 7.477 11.303 1.247 3.767 -1.185 N7 GFF 29
GFF C8 C8 C 0 1 Y N N 7.335 7.273 11.416 1.431 2.463 -1.253 C8 GFF 30
GFF "C2'" "C2'" C 0 1 N N N 4.845 6.046 9.573 0.878 -0.312 0.578 "C2'" GFF 31
GFF "C3'" "C3'" C 0 1 N N S 4.364 5.396 10.855 1.309 -1.697 0.152 "C3'" GFF 32
GFF "O3'" "O3'" O 0 1 N N N 3.445 4.330 10.597 2.127 -2.250 1.180 "O3'" GFF 33
GFF HN21 1HN2 H 0 0 N N N 8.227 10.527 6.375 2.433 3.341 4.671 HN21 GFF 34
GFF HN22 2HN2 H 0 0 N N N 9.041 9.259 5.746 2.822 5.030 4.427 HN22 GFF 35
GFF HN1 HN1 H 0 1 N N N 10.397 9.192 7.491 1.862 6.083 2.672 HN1 GFF 36
GFF H8 H8 H 0 1 N N N 6.872 6.870 12.305 1.302 1.855 -2.139 H8 GFF 37
GFF "H1'" "H1'" H 0 1 N N N 4.925 8.172 9.244 2.853 0.503 1.007 "H1'" GFF 38
GFF "H2'1" "1H2'" H 0 0 N N N 4.064 6.053 8.798 0.008 0.008 -0.009 "H2'1" GFF 39
GFF "H2'2" "2H2'" H 0 0 N N N 5.686 5.515 9.103 0.635 -0.225 1.641 "H2'2" GFF 40
GFF "H3'" "H3'" H 0 1 N N N 5.170 4.938 11.447 0.475 -2.383 -0.018 "H3'" GFF 41
GFF H1 H1 H 0 1 N N N 3.241 4.304 9.669 1.524 -2.629 1.838 H1 GFF 42
GFF "H4'" "H4'" H 0 1 N N N 2.630 6.640 11.147 3.008 -2.117 -1.157 "H4'" GFF 43
GFF "H5'1" "1H5'" H 0 0 N N N 2.862 5.527 13.229 0.546 -0.756 -2.367 "H5'1" GFF 44
GFF "H5'2" "2H5'" H 0 0 N N N 2.971 7.320 13.408 0.912 -2.496 -2.504 "H5'2" GFF 45
GFF H1A H1A H 0 1 N N N 4.257 4.943 16.470 0.461 -2.973 -5.910 H1A GFF 46
GFF H1B H1B H 0 1 N N N 3.840 3.038 11.650 -1.894 -1.678 -6.677 H1B GFF 47
GFF H1G H1G H 0 1 N N N 3.446 2.471 17.761 -4.126 0.222 -2.540 H1G GFF 48
GFF H3G H3G H 0 1 N N N 2.377 0.087 17.126 -1.566 1.315 -1.448 H3G GFF 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GFF P1 "O5'" SING N N 1
GFF P1 O1A SING N N 2
GFF P1 O2A DOUB N N 3
GFF P1 O3A SING N N 4
GFF O1A H1A SING N N 5
GFF O3A P2 SING N N 6
GFF "O5'" "C5'" SING N N 7
GFF P2 O1B SING N N 8
GFF P2 O2B DOUB N N 9
GFF P2 C3B SING N N 10
GFF O1B H1B SING N N 11
GFF C3B F1B SING N N 12
GFF C3B F2B SING N N 13
GFF C3B P3 SING N N 14
GFF P3 O1G SING N N 15
GFF P3 O2G DOUB N N 16
GFF P3 O3G SING N N 17
GFF O1G H1G SING N N 18
GFF O3G H3G SING N N 19
GFF "C5'" "C4'" SING N N 20
GFF "C5'" "H5'1" SING N N 21
GFF "C5'" "H5'2" SING N N 22
GFF "C4'" "C3'" SING N N 23
GFF "C4'" "O4'" SING N N 24
GFF "C4'" "H4'" SING N N 25
GFF "O4'" "C1'" SING N N 26
GFF "C1'" N9 SING N N 27
GFF "C1'" "C2'" SING N N 28
GFF "C1'" "H1'" SING N N 29
GFF N9 C8 SING Y N 30
GFF N9 C4 SING Y N 31
GFF C4 C5 DOUB Y N 32
GFF C4 N3 SING N N 33
GFF N3 C2 DOUB N N 34
GFF C2 N2 SING N N 35
GFF C2 N1 SING N N 36
GFF N2 HN21 SING N N 37
GFF N2 HN22 SING N N 38
GFF N1 C6 SING N N 39
GFF N1 HN1 SING N N 40
GFF C6 O6 DOUB N N 41
GFF C6 C5 SING N N 42
GFF C5 N7 SING Y N 43
GFF N7 C8 DOUB Y N 44
GFF C8 H8 SING N N 45
GFF "C2'" "C3'" SING N N 46
GFF "C2'" "H2'1" SING N N 47
GFF "C2'" "H2'2" SING N N 48
GFF "C3'" "O3'" SING N N 49
GFF "C3'" "H3'" SING N N 50
GFF "O3'" H1 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GFF SMILES ACDLabs 10.04 "FC(F)(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"
GFF SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)C(F)(F)[P](O)(O)=O)O3"
GFF SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)C(F)(F)[P](O)(O)=O)O3"
GFF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(C(F)(F)P(=O)(O)O)O)O)N=C(NC2=O)N"
GFF SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(F)(F)P(=O)(O)O)O)O)N=C(NC2=O)N"
GFF InChI InChI 1.03 "InChI=1S/C11H16F2N5O12P3/c12-11(13,31(21,22)23)32(24,25)30-33(26,27)28-2-5-4(19)1-6(29-5)18-3-15-7-8(18)16-10(14)17-9(7)20/h3-6,19H,1-2H2,(H,24,25)(H,26,27)(H2,21,22,23)(H3,14,16,17,20)/t4-,5+,6+/m0/s1"
GFF InChIKey InChI 1.03 BLHFKUNEUAHYSE-KVQBGUIXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GFF "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-O-[(R)-{[(S)-[difluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine"
GFF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-difluoro-methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GFF "Create component" 2006-10-25 RCSB
GFF "Modify descriptor" 2011-06-04 RCSB
#