data_GFT # _chem_comp.id GFT _chem_comp.name "(2S)-2-azanyl-3-[cyclohexyloxy(methyl)phosphoryl]oxy-propanoic acid" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H20 N O5 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms "Cyclosarin bound Serine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.243 _chem_comp.one_letter_code S _chem_comp.three_letter_code GFT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZLU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GFT N N N 0 1 N N N N N N 7.503 4.898 -37.817 2.770 -0.084 -1.740 N GFT 1 GFT CA CA C 0 1 N N S N N N 8.692 4.277 -37.204 2.824 0.123 -0.287 CA GFT 2 GFT C C C 0 1 N N N N N N 9.893 4.230 -38.253 3.440 -1.084 0.370 C GFT 3 GFT O O O 0 1 N N N N N N 10.337 5.560 -38.440 3.466 -2.142 -0.213 O GFT 4 GFT CB CB C 0 1 N N N N N N 8.271 2.837 -36.656 1.407 0.330 0.252 CB GFT 5 GFT OG OG O 0 1 N N N N N N 9.290 1.880 -36.537 0.866 1.540 -0.283 OG GFT 6 GFT CAA CAA C 0 1 N N N N N N 10.567 -0.545 -36.292 -0.867 3.709 -0.686 CAA GFT 7 GFT OAC OAC O 0 1 N N N N N N 9.773 0.562 -38.639 -0.757 2.180 1.541 OAC GFT 8 GFT CAD CAD C 0 1 N N N N N N 5.073 -3.067 -37.403 -3.151 -2.919 -0.095 CAD GFT 9 GFT CAE CAE C 0 1 N N N N N N 6.534 -3.379 -37.785 -1.746 -2.715 -0.666 CAE GFT 10 GFT CAF CAF C 0 1 N N N N N N 4.801 -1.564 -37.434 -3.379 -1.942 1.060 CAF GFT 11 GFT CAG CAG C 0 1 N N N N N N 7.501 -2.766 -36.773 -1.607 -1.280 -1.177 CAG GFT 12 GFT CAH CAH C 0 1 N N N N N N 5.707 -0.848 -36.438 -3.241 -0.506 0.548 CAH GFT 13 GFT OAI OAI O 0 1 N N N N N N 7.960 -0.413 -37.293 -1.706 1.038 -0.501 OAI GFT 14 GFT CAJ CAJ C 0 1 N N N N N N 7.221 -1.256 -36.447 -1.836 -0.302 -0.023 CAJ GFT 15 GFT PAK PAK P 0 1 N N S N N N 9.364 0.352 -37.132 -0.612 2.071 0.072 PAK GFT 16 GFT OXT OXT O 0 1 N Y N N N N 10.220 3.385 -39.227 3.960 -0.985 1.604 OXT GFT 17 GFT HN1 HN1 H 0 1 N N N N N N 7.743 5.803 -38.168 3.697 -0.159 -2.130 HN1 GFT 18 GFT HN2 HN2 H 0 1 N N N N N N 7.178 4.324 -38.569 2.215 -0.895 -1.969 HN2 GFT 19 GFT HA HA H 0 1 N N N N N N 9.018 4.882 -36.345 3.428 1.004 -0.068 HA GFT 20 GFT HB1C HB1C H 0 0 N N N N N N 7.511 2.430 -37.340 0.780 -0.511 -0.044 HB1C GFT 21 GFT HB2C HB2C H 0 0 N N N N N N 7.829 2.977 -35.659 1.438 0.396 1.339 HB2C GFT 22 GFT HAA1 HAA1 H 0 0 N N N N N N 10.611 -1.567 -36.695 -0.760 3.629 -1.768 HAA1 GFT 23 GFT HAA2 HAA2 H 0 0 N N N N N N 11.545 -0.057 -36.421 -1.867 4.069 -0.446 HAA2 GFT 24 GFT HAA3 HAA3 H 0 0 N N N N N N 10.315 -0.584 -35.222 -0.126 4.409 -0.299 HAA3 GFT 25 GFT HAD1 HAD1 H 0 0 N N N N N N 4.401 -3.568 -38.116 -3.890 -2.738 -0.876 HAD1 GFT 26 GFT HAD2 HAD2 H 0 0 N N N N N N 4.879 -3.446 -36.389 -3.250 -3.941 0.269 HAD2 GFT 27 GFT HAE1 HAE1 H 0 0 N N N N N N 6.677 -4.470 -37.806 -1.007 -2.895 0.115 HAE1 GFT 28 GFT HAE2 HAE2 H 0 0 N N N N N N 6.743 -2.963 -38.782 -1.583 -3.411 -1.488 HAE2 GFT 29 GFT HAF1 HAF1 H 0 0 N N N N N N 4.997 -1.179 -38.446 -4.380 -2.087 1.466 HAF1 GFT 30 GFT HAF2 HAF2 H 0 0 N N N N N N 3.750 -1.379 -37.168 -2.640 -2.122 1.840 HAF2 GFT 31 GFT HAG1 HAG1 H 0 0 N N N N N N 7.430 -3.340 -35.837 -0.606 -1.134 -1.584 HAG1 GFT 32 GFT HAG2 HAG2 H 0 0 N N N N N N 8.521 -2.848 -37.177 -2.346 -1.099 -1.958 HAG2 GFT 33 GFT HAH1 HAH1 H 0 0 N N N N N N 5.651 0.230 -36.650 -3.980 -0.326 -0.233 HAH1 GFT 34 GFT HAH2 HAH2 H 0 0 N N N N N N 5.315 -1.044 -35.429 -3.403 0.190 1.371 HAH2 GFT 35 GFT HAJ HAJ H 0 1 N N N N N N 7.581 -1.099 -35.419 -1.097 -0.483 0.758 HAJ GFT 36 GFT HXT HXT H 0 1 N Y N N N N 10.711 3.847 -39.896 4.344 -1.787 1.984 HXT GFT 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GFT N CA SING N N 1 GFT C O DOUB N N 2 GFT C OXT SING N N 3 GFT CB OG SING N N 4 GFT CB CA SING N N 5 GFT OG PAK SING N N 6 GFT CAA PAK SING N N 7 GFT OAC PAK DOUB N N 8 GFT CAD CAE SING N N 9 GFT CAD CAF SING N N 10 GFT CAE CAG SING N N 11 GFT CAF CAH SING N N 12 GFT CAG CAJ SING N N 13 GFT CAH CAJ SING N N 14 GFT OAI CAJ SING N N 15 GFT OAI PAK SING N N 16 GFT N HN1 SING N N 17 GFT N HN2 SING N N 18 GFT CA HA SING N N 19 GFT C CA SING N N 20 GFT CB HB1C SING N N 21 GFT CB HB2C SING N N 22 GFT CAA HAA1 SING N N 23 GFT CAA HAA2 SING N N 24 GFT CAA HAA3 SING N N 25 GFT CAD HAD1 SING N N 26 GFT CAD HAD2 SING N N 27 GFT CAE HAE1 SING N N 28 GFT CAE HAE2 SING N N 29 GFT CAF HAF1 SING N N 30 GFT CAF HAF2 SING N N 31 GFT CAG HAG1 SING N N 32 GFT CAG HAG2 SING N N 33 GFT CAH HAH1 SING N N 34 GFT CAH HAH2 SING N N 35 GFT CAJ HAJ SING N N 36 GFT OXT HXT SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GFT SMILES ACDLabs 12.01 "O=C(O)C(N)COP(=O)(OC1CCCCC1)C" GFT InChI InChI 1.03 "InChI=1S/C10H20NO5P/c1-17(14,15-7-9(11)10(12)13)16-8-5-3-2-4-6-8/h8-9H,2-7,11H2,1H3,(H,12,13)/t9-,17-/m0/s1" GFT InChIKey InChI 1.03 MMIZIQBFTWGSRL-XYZCENFISA-N GFT SMILES_CANONICAL CACTVS 3.385 "C[P@](=O)(OC[C@H](N)C(O)=O)OC1CCCCC1" GFT SMILES CACTVS 3.385 "C[P](=O)(OC[CH](N)C(O)=O)OC1CCCCC1" GFT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[P@](=O)(OC[C@@H](C(=O)O)N)OC1CCCCC1" GFT SMILES "OpenEye OEToolkits" 1.9.2 "CP(=O)(OCC(C(=O)O)N)OC1CCCCC1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GFT "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(S)-(cyclohexyloxy)(methyl)phosphoryl]-L-serine" GFT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-3-[cyclohexyloxy(methyl)phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GFT "Create component" 2013-02-04 EBI GFT "Initial release" 2013-03-27 RCSB GFT "Modify descriptor" 2014-09-05 RCSB GFT "Modify synonyms" 2021-03-01 PDBE GFT "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GFT _pdbx_chem_comp_synonyms.name "Cyclosarin bound Serine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #