data_GH3 # _chem_comp.id GH3 _chem_comp.name "3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H16 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-10-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.181 _chem_comp.one_letter_code G _chem_comp.three_letter_code GH3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N1H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GH3 PG PG P 0 1 N N N -8.639 97.986 28.747 -6.373 -1.776 0.119 PG GH3 1 GH3 O1G O1G O 0 1 N N N -10.054 98.501 28.784 -5.591 -2.096 -1.096 O1G GH3 2 GH3 O2G O2G O 0 1 N N N -8.298 97.205 29.960 -6.885 -3.141 0.802 O2G GH3 3 GH3 O3G O3G O 0 1 N N N -7.723 99.251 28.620 -7.641 -0.869 -0.282 O3G GH3 4 GH3 O3B O3B O 0 1 N N N -8.467 97.141 27.288 -5.444 -0.971 1.159 O3B GH3 5 GH3 PB PB P 0 1 N N R -7.796 95.643 27.104 -4.656 0.147 0.309 PB GH3 6 GH3 O1B O1B O 0 1 N N N -6.357 95.895 27.092 -4.233 -0.427 -0.988 O1B GH3 7 GH3 O2B O2B O 0 1 N N N -8.168 94.783 28.196 -5.625 1.406 0.050 O2B GH3 8 GH3 O3A O3A O 0 1 N N N -8.173 94.895 25.773 -3.358 0.629 1.131 O3A GH3 9 GH3 PA PA P 0 1 N N S -8.184 95.435 24.199 -2.417 1.421 0.092 PA GH3 10 GH3 O1A O1A O 0 1 N N N -9.271 94.661 23.555 -2.424 0.722 -1.212 O1A GH3 11 GH3 O2A O2A O 0 1 N N N -8.198 96.917 24.136 -2.973 2.920 -0.100 O2A GH3 12 GH3 "O5'" O5* O 0 1 N N N -6.882 94.929 23.502 -0.913 1.476 0.664 "O5'" GH3 13 GH3 "C5'" C5* C 0 1 N N N -5.536 95.352 23.686 -0.108 2.082 -0.349 "C5'" GH3 14 GH3 "C4'" C4* C 0 1 N N S -4.770 94.433 22.755 1.342 2.165 0.134 "C4'" GH3 15 GH3 "O4'" O4* O 0 1 N N N -4.279 93.150 23.308 1.903 0.841 0.270 "O4'" GH3 16 GH3 "C3'" C3* C 0 1 N N N -5.550 94.115 21.447 2.225 2.861 -0.926 "C3'" GH3 17 GH3 "C2'" C2* C 0 1 N N R -4.953 92.754 21.013 3.568 2.097 -0.856 "C2'" GH3 18 GH3 "O2'" O2* O 0 1 N N N -3.833 92.817 20.062 4.627 2.981 -0.482 "O2'" GH3 19 GH3 "C1'" C1* C 0 1 N N R -4.630 92.112 22.362 3.334 1.029 0.235 "C1'" GH3 20 GH3 N9 N9 N 0 1 Y N N -5.732 91.351 22.974 4.004 -0.223 -0.125 N9 GH3 21 GH3 C8 C8 C 0 1 Y N N -6.802 91.723 23.741 3.445 -1.276 -0.789 C8 GH3 22 GH3 N7 N7 N 0 1 Y N N -7.611 90.778 24.137 4.326 -2.221 -0.940 N7 GH3 23 GH3 C5 C5 C 0 1 Y N N -7.036 89.655 23.577 5.500 -1.833 -0.383 C5 GH3 24 GH3 C6 C6 C 0 1 N N N -7.398 88.255 23.622 6.773 -2.434 -0.249 C6 GH3 25 GH3 O6 O6 O 0 1 N N N -8.345 87.709 24.165 6.987 -3.550 -0.693 O6 GH3 26 GH3 N1 N1 N 0 1 N N N -6.513 87.439 22.904 7.748 -1.740 0.378 N1 GH3 27 GH3 C2 C2 C 0 1 N N N -5.372 87.916 22.216 7.496 -0.496 0.875 C2 GH3 28 GH3 N2 N2 N 0 1 N N N -4.589 87.059 21.566 8.504 0.184 1.512 N2 GH3 29 GH3 N3 N3 N 0 1 N N N -5.038 89.212 22.184 6.318 0.074 0.757 N3 GH3 30 GH3 C4 C4 C 0 1 Y N N -5.882 90.026 22.874 5.306 -0.551 0.144 C4 GH3 31 GH3 HOG2 2HOG H 0 0 N N N -8.225 96.285 29.735 -7.436 -3.592 0.148 HOG2 GH3 32 GH3 HOG3 3HOG H 0 0 N N N -7.538 99.596 29.485 -8.122 -0.684 0.536 HOG3 GH3 33 GH3 HOB2 2HOB H 0 0 N N N -8.250 93.890 27.883 -5.876 1.749 0.918 HOB2 GH3 34 GH3 HOA2 2HOA H 0 0 N N N -8.201 97.272 25.017 -2.952 3.339 0.771 HOA2 GH3 35 GH3 "H5'" 1H5* H 0 1 N N N -5.200 95.290 24.732 -0.480 3.086 -0.556 "H5'" GH3 36 GH3 "H5''" 2H5* H 0 0 N N N -5.400 96.410 23.419 -0.155 1.483 -1.258 "H5''" GH3 37 GH3 "H4'" H4* H 0 1 N N N -3.878 95.047 22.561 1.395 2.699 1.082 "H4'" GH3 38 GH3 "H3'2" 2H3* H 0 0 N N N -5.446 94.897 20.680 1.780 2.765 -1.916 "H3'2" GH3 39 GH3 "H3'" H3* H 0 1 N N N -6.633 94.047 21.625 2.370 3.911 -0.672 "H3'" GH3 40 GH3 "H2'" H2* H 0 1 N N N -5.648 92.160 20.402 3.788 1.623 -1.813 "H2'" GH3 41 GH3 "HO2'" *HO2 H 0 0 N N N -4.171 92.831 19.174 4.683 3.657 -1.171 "HO2'" GH3 42 GH3 "H1'" H1* H 0 1 N N N -3.814 91.406 22.150 3.694 1.387 1.200 "H1'" GH3 43 GH3 H8 H8 H 0 1 N N N -6.970 92.756 24.008 2.424 -1.318 -1.138 H8 GH3 44 GH3 HN1 HN1 H 0 1 N N N -6.700 86.457 22.876 8.629 -2.132 0.482 HN1 GH3 45 GH3 HN21 1HN2 H 0 0 N N N -4.733 86.071 21.513 8.341 1.071 1.868 HN21 GH3 46 GH3 HN22 2HN2 H 0 0 N N N -3.834 87.556 21.138 9.378 -0.225 1.611 HN22 GH3 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GH3 PG O1G DOUB N N 1 GH3 PG O2G SING N N 2 GH3 PG O3G SING N N 3 GH3 PG O3B SING N N 4 GH3 O2G HOG2 SING N N 5 GH3 O3G HOG3 SING N N 6 GH3 O3B PB SING N N 7 GH3 PB O1B DOUB N N 8 GH3 PB O2B SING N N 9 GH3 PB O3A SING N N 10 GH3 O2B HOB2 SING N N 11 GH3 O3A PA SING N N 12 GH3 PA O1A DOUB N N 13 GH3 PA O2A SING N N 14 GH3 PA "O5'" SING N N 15 GH3 O2A HOA2 SING N N 16 GH3 "O5'" "C5'" SING N N 17 GH3 "C5'" "C4'" SING N N 18 GH3 "C5'" "H5'" SING N N 19 GH3 "C5'" "H5''" SING N N 20 GH3 "C4'" "O4'" SING N N 21 GH3 "C4'" "C3'" SING N N 22 GH3 "C4'" "H4'" SING N N 23 GH3 "O4'" "C1'" SING N N 24 GH3 "C3'" "C2'" SING N N 25 GH3 "C3'" "H3'2" SING N N 26 GH3 "C3'" "H3'" SING N N 27 GH3 "C2'" "O2'" SING N N 28 GH3 "C2'" "C1'" SING N N 29 GH3 "C2'" "H2'" SING N N 30 GH3 "O2'" "HO2'" SING N N 31 GH3 "C1'" N9 SING N N 32 GH3 "C1'" "H1'" SING N N 33 GH3 N9 C8 SING Y N 34 GH3 N9 C4 SING Y N 35 GH3 C8 N7 DOUB Y N 36 GH3 C8 H8 SING N N 37 GH3 N7 C5 SING Y N 38 GH3 C5 C6 SING N N 39 GH3 C5 C4 DOUB Y N 40 GH3 C6 O6 DOUB N N 41 GH3 C6 N1 SING N N 42 GH3 N1 C2 SING N N 43 GH3 N1 HN1 SING N N 44 GH3 C2 N2 SING N N 45 GH3 C2 N3 DOUB N N 46 GH3 N2 HN21 SING N N 47 GH3 N2 HN22 SING N N 48 GH3 N3 C4 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GH3 SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3" GH3 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)C[C@H]3O" GH3 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C[CH]3O" GH3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H](C[C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N" GH3 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(CC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N" GH3 InChI InChI 1.03 "InChI=1S/C10H16N5O13P3/c11-10-13-7-6(8(17)14-10)12-3-15(7)9-5(16)1-4(26-9)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-5,9,16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,9+/m0/s1" GH3 InChIKey InChI 1.03 QGYIFQKZZSSUCR-OBXARNEKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GH3 "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-deoxyguanosine 5'-(tetrahydrogen triphosphate) ; GH3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-4-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GH3 "Create component" 2002-10-24 RCSB GH3 "Modify descriptor" 2011-06-04 RCSB #