data_GHA # _chem_comp.id GHA _chem_comp.name "1'-((1,4-DIDEOXY-1,4-IMINO-D-ARABINITOL)-4-N-AMMONIUM)-1'-DEOXY-L-ERYTHRITOL-3'-SULFATE INNER SALT" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms GHAVAMIOL _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2004-06-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GHA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GHA C1 C1 C 0 1 N N R 31.370 66.131 6.546 3.919 0.712 0.322 C1 GHA 1 GHA O1 O1 O 0 1 N N N 31.397 67.156 5.638 4.488 1.467 1.393 O1 GHA 2 GHA C2 C2 C 0 1 N N R 32.619 65.982 7.466 3.861 -0.784 0.692 C2 GHA 3 GHA O2 O2 O 0 1 N N N 33.797 65.693 7.077 4.584 -1.563 -0.263 O2 GHA 4 GHA C3 C3 C 0 1 N N N 32.149 66.139 8.882 2.361 -1.148 0.656 C3 GHA 5 GHA N4 N4 N 0 1 N N N 30.764 65.568 8.582 1.753 -0.141 -0.250 N4 GHA 6 GHA C5 C5 C 0 1 N N R 30.233 66.407 7.547 2.449 1.126 0.093 C5 GHA 7 GHA C6 C6 C 0 1 N N N 28.969 65.984 6.763 2.350 2.123 -1.064 C6 GHA 8 GHA O6 O6 O 0 1 N N N 27.727 66.198 7.439 2.990 1.577 -2.219 O6 GHA 9 GHA C7 C7 C 0 1 N N N 29.942 65.581 9.865 0.355 0.018 0.173 C7 GHA 10 GHA C8 C8 C 0 1 N N R 28.909 64.482 10.127 -0.411 -1.278 -0.100 C8 GHA 11 GHA O8 O8 O 0 1 N N N 28.938 63.118 9.920 0.092 -2.315 0.745 O8 GHA 12 GHA C9 C9 C 0 1 N N S 27.714 65.157 10.744 -1.898 -1.061 0.188 C9 GHA 13 GHA C10 C10 C 0 1 N N N 26.964 64.039 11.533 -2.664 -2.357 -0.085 C10 GHA 14 GHA O10 O10 O 0 1 N N N 26.143 63.527 10.439 -2.399 -2.795 -1.419 O10 GHA 15 GHA O9 O9 O 0 1 N N N 27.080 66.412 10.809 -2.400 -0.024 -0.657 O9 GHA 16 GHA S9 S9 S 0 1 N N N 27.069 67.487 11.785 -3.537 0.805 0.224 S9 GHA 17 GHA O11 O11 O -1 1 N N N 28.398 68.029 11.906 -4.673 1.634 1.106 O11 GHA 18 GHA O12 O12 O -1 1 N N N 26.606 66.935 13.046 -2.381 1.189 1.353 O12 GHA 19 GHA O13 O13 O -1 1 N N N 26.162 68.460 11.179 -3.803 1.813 -1.067 O13 GHA 20 GHA H1 H1 H 0 1 N N N 31.279 65.218 5.912 4.499 0.854 -0.590 H1 GHA 21 GHA HO1 HO1 H 0 1 N N N 30.636 67.247 5.077 5.388 1.136 1.521 HO1 GHA 22 GHA H2 H2 H 0 1 N N N 33.690 66.132 7.195 4.265 -0.942 1.692 H2 GHA 23 GHA HO2 HO2 H 0 1 N N N 34.558 65.602 7.638 4.476 -2.489 -0.008 HO2 GHA 24 GHA H31 1H3 H 0 1 N N N 32.219 67.145 9.358 1.928 -1.074 1.653 H31 GHA 25 GHA H32 2H3 H 0 1 N N N 32.751 65.675 9.698 2.224 -2.153 0.255 H32 GHA 26 GHA H5 H5 H 0 1 N N N 29.954 67.402 7.965 2.030 1.557 1.002 H5 GHA 27 GHA H61 1H6 H 0 1 N N N 29.054 64.918 6.448 1.301 2.316 -1.287 H61 GHA 28 GHA H62 2H6 H 0 1 N N N 28.953 66.483 5.766 2.840 3.055 -0.783 H62 GHA 29 GHA HO6 HO6 H 0 1 N N N 26.951 65.938 6.957 2.904 2.235 -2.923 HO6 GHA 30 GHA H71 1H7 H 0 1 N N N 29.432 66.569 9.946 -0.103 0.835 -0.385 H71 GHA 31 GHA H72 2H7 H 0 1 N N N 30.643 65.619 10.731 0.322 0.243 1.239 H72 GHA 32 GHA H8 H8 H 0 1 N N N 29.403 63.588 9.681 -0.280 -1.564 -1.143 H8 GHA 33 GHA HO8 HO8 H 0 1 N N N 28.297 62.436 10.083 -0.043 -2.022 1.657 HO8 GHA 34 GHA H9 H9 H 0 1 N N N 28.167 66.062 10.275 -2.028 -0.775 1.231 H9 GHA 35 GHA H101 1H10 H 0 0 N N N 26.424 64.356 12.456 -3.733 -2.179 0.034 H101 GHA 36 GHA H102 2H10 H 0 0 N N N 27.599 63.296 12.070 -2.343 -3.124 0.620 H102 GHA 37 GHA H10 H10 H 0 1 N N N 25.686 62.846 10.919 -2.900 -3.612 -1.550 H10 GHA 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GHA C1 O1 SING N N 1 GHA C1 C2 SING N N 2 GHA C1 C5 SING N N 3 GHA C1 H1 SING N N 4 GHA O1 HO1 SING N N 5 GHA C2 O2 SING N N 6 GHA C2 C3 SING N N 7 GHA C2 H2 SING N N 8 GHA O2 HO2 SING N N 9 GHA C3 N4 SING N N 10 GHA C3 H31 SING N N 11 GHA C3 H32 SING N N 12 GHA N4 C5 SING N N 13 GHA N4 C7 SING N N 14 GHA C5 C6 SING N N 15 GHA C5 H5 SING N N 16 GHA C6 O6 SING N N 17 GHA C6 H61 SING N N 18 GHA C6 H62 SING N N 19 GHA O6 HO6 SING N N 20 GHA C7 C8 SING N N 21 GHA C7 H71 SING N N 22 GHA C7 H72 SING N N 23 GHA C8 O8 SING N N 24 GHA C8 C9 SING N N 25 GHA C8 H8 SING N N 26 GHA O8 HO8 SING N N 27 GHA C9 C10 SING N N 28 GHA C9 O9 SING N N 29 GHA C9 H9 SING N N 30 GHA C10 O10 SING N N 31 GHA C10 H101 SING N N 32 GHA C10 H102 SING N N 33 GHA O10 H10 SING N N 34 GHA O9 S9 SING N N 35 GHA S9 O11 SING N N 36 GHA S9 O12 SING N N 37 GHA S9 O13 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GHA SMILES ACDLabs 10.04 "[O-]S([O-])([O-])OC(C(O)CN1C(C(O)C(O)C1)CO)CO" GHA SMILES_CANONICAL CACTVS 3.341 "OC[C@H](O[S]([O-])([O-])[O-])[C@H](O)CN1C[C@@H](O)[C@H](O)[C@H]1CO" GHA SMILES CACTVS 3.341 "OC[CH](O[S]([O-])([O-])[O-])[CH](O)CN1C[CH](O)[CH](O)[CH]1CO" GHA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C([C@@H]([C@H]([N@@]1CC(C(CO)OS([O-])([O-])[O-])O)CO)O)O" GHA SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(N1CC(C(CO)OS([O-])([O-])[O-])O)CO)O)O" GHA InChI InChI 1.03 "InChI=1S/C9H21NO9S/c11-3-5-9(15)7(14)2-10(5)1-6(13)8(4-12)19-20(16,17)18/h5-9,11-18H,1-4H2/p-3/t5-,6-,7-,8?,9-/m1/s1" GHA InChIKey InChI 1.03 YWOSRVQDYDWMAB-JBXPSPKUSA-K # _pdbx_chem_comp_identifier.comp_id GHA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "({[(1S,2R)-3-[(2R,3R,4R)-3,4-dihydroxy-2-(hydroxymethyl)pyrrolidin-1-yl]-2-hydroxy-1-(hydroxymethyl)propyl]oxy}-lambda~4~-sulfanetriyl)trioxidanide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GHA "Create component" 2004-06-22 RCSB GHA "Modify descriptor" 2011-06-04 RCSB GHA "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GHA _pdbx_chem_comp_synonyms.name GHAVAMIOL _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##