data_GHD # _chem_comp.id GHD _chem_comp.name "(2~{R},4~{S},5~{S},6~{S})-5-acetamido-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-2-[[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{R},5~{R})-1,2,4,5-tetrakis(oxidanyl)-6-oxidanylidene-hexan-3-yl]oxy-oxan-2-yl]methoxy]oxane-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H39 N O19" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-02 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 633.551 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GHD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QXO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GHD N1 N1 N 0 1 N N N -7.701 6.996 24.658 5.023 -0.478 -1.557 N1 GHD 1 GHD C4 C1 C 0 1 N N S -6.582 8.643 23.076 3.656 0.041 0.405 C4 GHD 2 GHD C5 C2 C 0 1 N N R -7.657 8.935 22.048 4.703 -0.556 1.349 C5 GHD 3 GHD C6 C3 C 0 1 N N R -7.762 10.299 21.292 4.008 -1.119 2.590 C6 GHD 4 GHD C7 C4 C 0 1 N N N -8.807 10.289 20.186 5.055 -1.716 3.533 C7 GHD 5 GHD C8 C5 C 0 1 N N R -4.402 9.249 23.581 1.930 1.701 0.287 C8 GHD 6 GHD C10 C6 C 0 1 N N R -3.038 8.412 20.550 -0.677 -0.956 0.462 C10 GHD 7 GHD C13 C7 C 0 1 N N R 0.637 9.481 21.801 -4.380 2.184 -0.264 C13 GHD 8 GHD C15 C8 C 0 1 N N R 0.535 7.047 22.743 -5.995 0.316 0.113 C15 GHD 9 GHD C17 C9 C 0 1 N N N 2.671 5.861 23.448 -7.582 -1.523 0.611 C17 GHD 10 GHD C20 C10 C 0 1 N N R -3.369 8.302 19.025 -0.116 -1.841 -0.654 C20 GHD 11 GHD C21 C11 C 0 1 N N N -3.376 10.410 23.484 1.241 2.767 1.100 C21 GHD 12 GHD C22 C12 C 0 1 N N N -4.527 8.794 25.028 2.555 2.333 -0.959 C22 GHD 13 GHD C1 C13 C 0 1 N N N -9.680 5.674 24.389 6.764 -1.320 -3.100 C1 GHD 14 GHD C2 C14 C 0 1 N N N -8.440 6.273 23.794 6.076 -0.206 -2.354 C2 GHD 15 GHD O1 O1 O 0 1 N N N -8.060 5.938 22.670 6.470 0.935 -2.470 O1 GHD 16 GHD C3 C15 C 0 1 N N S -7.047 8.299 24.485 4.351 0.606 -0.836 C3 GHD 17 GHD O2 O2 O 0 1 N N N -7.357 7.921 21.096 5.406 -1.604 0.679 O2 GHD 18 GHD O3 O3 O 0 1 N N N -8.092 11.348 22.203 3.306 -0.071 3.260 O3 GHD 19 GHD O4 O4 O 0 1 N N N -8.525 11.209 19.135 4.399 -2.345 4.636 O4 GHD 20 GHD O5 O5 O 0 1 N N N -5.659 9.744 23.101 2.953 1.089 1.075 O5 GHD 21 GHD O6 O6 O 0 1 N N N -3.850 8.100 22.854 0.977 0.712 -0.107 O6 GHD 22 GHD C9 C16 C 0 1 N N N -4.159 7.916 21.441 0.425 -0.031 0.982 C9 GHD 23 GHD O7 O7 O 0 1 N N N -1.829 7.669 20.850 -1.756 -0.172 -0.049 O7 GHD 24 GHD C11 C17 C 0 1 N N S -0.788 7.928 19.915 -2.855 -0.942 -0.540 C11 GHD 25 GHD O8 O8 O 0 1 N N N 0.457 7.438 20.390 -3.884 -0.064 -1.001 O8 GHD 26 GHD C12 C18 C 0 1 N N S 1.012 7.982 21.632 -4.513 0.690 0.037 C12 GHD 27 GHD O9 O9 O 0 1 N N N 0.673 10.187 20.555 -5.062 2.487 -1.483 O9 GHD 28 GHD C14 C19 C 0 1 N N N 1.546 10.200 22.780 -2.900 2.546 -0.405 C14 GHD 29 GHD O10 O10 O 0 1 N N N 2.189 11.321 22.175 -2.768 3.960 -0.561 O10 GHD 30 GHD O11 O11 O 0 1 N N N -0.651 7.614 23.301 -6.624 1.069 1.152 O11 GHD 31 GHD C16 C20 C 0 1 N N R 1.498 6.741 23.895 -6.129 -1.178 0.415 C16 GHD 32 GHD O12 O12 O 0 1 N N N 0.739 6.111 24.938 -5.400 -1.491 1.604 O12 GHD 33 GHD O13 O13 O 0 1 N N N 2.597 4.674 23.559 -7.956 -1.989 1.661 O13 GHD 34 GHD C18 C21 C 0 1 N N R -1.082 7.220 18.596 -2.382 -1.826 -1.697 C18 GHD 35 GHD O14 O14 O 0 1 N N N -0.354 7.857 17.552 -3.467 -2.638 -2.152 O14 GHD 36 GHD C19 C22 C 0 1 N N S -2.588 7.197 18.289 -1.239 -2.721 -1.210 C19 GHD 37 GHD O15 O15 O 0 1 N N N -3.109 5.897 18.580 -0.742 -3.498 -2.302 O15 GHD 38 GHD O16 O16 O 0 1 N N N -4.776 8.075 18.858 0.408 -1.017 -1.698 O16 GHD 39 GHD O17 O17 O 0 1 N N N -2.370 10.365 24.134 1.936 3.824 1.547 O17 GHD 40 GHD O18 O18 O 0 1 N N N -3.564 11.353 22.749 0.062 2.670 1.348 O18 GHD 41 GHD C23 C23 C 0 1 N N S -5.915 8.365 25.524 3.304 1.254 -1.747 C23 GHD 42 GHD O19 O19 O 0 1 N N N -5.779 7.082 26.146 2.380 0.261 -2.195 O19 GHD 43 GHD H4 H1 H 0 1 N N N -7.579 6.580 25.559 4.708 -1.391 -1.464 H4 GHD 44 GHD H6 H2 H 0 1 N N N -6.032 7.764 22.709 2.952 -0.736 0.106 H6 GHD 45 GHD H7 H3 H 0 1 N N N -8.636 8.731 22.506 5.407 0.221 1.647 H7 GHD 46 GHD H9 H4 H 0 1 N N N -6.782 10.505 20.837 3.304 -1.896 2.291 H9 GHD 47 GHD H12 H5 H 0 1 N N N -9.782 10.548 20.625 5.650 -2.454 2.996 H12 GHD 48 GHD H11 H6 H 0 1 N N N -8.854 9.276 19.760 5.706 -0.923 3.902 H11 GHD 49 GHD H16 H7 H 0 1 N N N -2.868 9.475 20.775 -1.038 -1.584 1.277 H16 GHD 50 GHD H19 H8 H 0 1 N N N -0.386 9.520 22.202 -4.819 2.760 0.551 H19 GHD 51 GHD H24 H9 H 0 1 N N N 0.275 6.087 22.272 -6.475 0.538 -0.840 H24 GHD 52 GHD H28 H10 H 0 1 N N N 3.561 6.312 23.034 -8.290 -1.354 -0.187 H28 GHD 53 GHD H33 H11 H 0 1 N N N -3.104 9.263 18.561 0.678 -2.472 -0.255 H33 GHD 54 GHD H35 H12 H 0 1 N N N -3.851 7.937 25.162 1.771 2.761 -1.582 H35 GHD 55 GHD H36 H13 H 0 1 N N N -4.194 9.627 25.664 3.252 3.115 -0.660 H36 GHD 56 GHD H3 H14 H 0 1 N N N -10.118 4.956 23.680 6.292 -1.450 -4.075 H3 GHD 57 GHD H1 H15 H 0 1 N N N -9.424 5.155 25.324 7.816 -1.071 -3.236 H1 GHD 58 GHD H2 H16 H 0 1 N N N -10.408 6.472 24.600 6.680 -2.246 -2.530 H2 GHD 59 GHD H5 H17 H 0 1 N N N -7.777 9.070 24.772 5.085 1.353 -0.535 H5 GHD 60 GHD H8 H18 H 0 1 N N N -7.546 7.069 21.470 4.840 -2.331 0.384 H8 GHD 61 GHD H10 H19 H 0 1 N N N -7.451 11.373 22.904 3.871 0.656 3.555 H10 GHD 62 GHD H13 H20 H 0 1 N N N -9.208 11.158 18.477 5.003 -2.746 5.276 H13 GHD 63 GHD H15 H21 H 0 1 N N N -5.077 8.473 21.202 0.005 0.657 1.716 H15 GHD 64 GHD H14 H22 H 0 1 N N N -4.320 6.845 21.248 1.209 -0.626 1.450 H14 GHD 65 GHD H17 H23 H 0 1 N N N -0.717 9.009 19.723 -3.246 -1.570 0.261 H17 GHD 66 GHD H18 H24 H 0 1 N N N 2.109 7.918 21.585 -4.033 0.468 0.990 H18 GHD 67 GHD H20 H25 H 0 1 N N N 0.439 11.096 20.699 -4.723 2.009 -2.252 H20 GHD 68 GHD H21 H26 H 0 1 N N N 0.946 10.550 23.633 -2.362 2.227 0.488 H21 GHD 69 GHD H22 H27 H 0 1 N N N 2.314 9.497 23.136 -2.484 2.043 -1.278 H22 GHD 70 GHD H23 H28 H 0 1 N N N 2.749 11.748 22.813 -1.862 4.254 -0.733 H23 GHD 71 GHD H25 H29 H 0 1 N N N -0.973 7.054 23.997 -6.247 0.921 2.030 H25 GHD 72 GHD H26 H30 H 0 1 N N N 1.906 7.694 24.263 -5.728 -1.755 -0.419 H26 GHD 73 GHD H27 H31 H 0 1 N N N 1.004 5.202 25.019 -5.703 -1.014 2.388 H27 GHD 74 GHD H29 H32 H 0 1 N N N -0.743 6.178 18.690 -2.030 -1.197 -2.515 H29 GHD 75 GHD H30 H33 H 0 1 N N N 0.572 7.858 17.766 -4.228 -2.134 -2.471 H30 GHD 76 GHD H31 H34 H 0 1 N N N -2.702 7.384 17.211 -1.605 -3.386 -0.427 H31 GHD 77 GHD H32 H35 H 0 1 N N N -4.040 5.879 18.391 -1.403 -4.075 -2.708 H32 GHD 78 GHD H34 H36 H 0 1 N N N -5.263 8.754 19.310 0.780 -1.512 -2.440 H34 GHD 79 GHD H39 H37 H 0 1 N N N -1.842 11.134 23.955 1.451 4.482 2.064 H39 GHD 80 GHD H37 H38 H 0 1 N N N -6.223 9.091 26.291 3.799 1.708 -2.606 H37 GHD 81 GHD H38 H39 H 0 1 N N N -5.081 7.114 26.790 1.683 0.603 -2.773 H38 GHD 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GHD O14 C18 SING N N 1 GHD C19 O15 SING N N 2 GHD C19 C18 SING N N 3 GHD C19 C20 SING N N 4 GHD C18 C11 SING N N 5 GHD O16 C20 SING N N 6 GHD C20 C10 SING N N 7 GHD O4 C7 SING N N 8 GHD C11 O8 SING N N 9 GHD C11 O7 SING N N 10 GHD C7 C6 SING N N 11 GHD O8 C12 SING N N 12 GHD C10 O7 SING N N 13 GHD C10 C9 SING N N 14 GHD O9 C13 SING N N 15 GHD O2 C5 SING N N 16 GHD C6 C5 SING N N 17 GHD C6 O3 SING N N 18 GHD C9 O6 SING N N 19 GHD C12 C13 SING N N 20 GHD C12 C15 SING N N 21 GHD C13 C14 SING N N 22 GHD C5 C4 SING N N 23 GHD O10 C14 SING N N 24 GHD O1 C2 DOUB N N 25 GHD C15 O11 SING N N 26 GHD C15 C16 SING N N 27 GHD O18 C21 DOUB N N 28 GHD O6 C8 SING N N 29 GHD C4 O5 SING N N 30 GHD C4 C3 SING N N 31 GHD O5 C8 SING N N 32 GHD C17 O13 DOUB N N 33 GHD C17 C16 SING N N 34 GHD C21 C8 SING N N 35 GHD C21 O17 SING N N 36 GHD C8 C22 SING N N 37 GHD C2 C1 SING N N 38 GHD C2 N1 SING N N 39 GHD C16 O12 SING N N 40 GHD C3 N1 SING N N 41 GHD C3 C23 SING N N 42 GHD C22 C23 SING N N 43 GHD C23 O19 SING N N 44 GHD N1 H4 SING N N 45 GHD C4 H6 SING N N 46 GHD C5 H7 SING N N 47 GHD C6 H9 SING N N 48 GHD C7 H12 SING N N 49 GHD C7 H11 SING N N 50 GHD C10 H16 SING N N 51 GHD C13 H19 SING N N 52 GHD C15 H24 SING N N 53 GHD C17 H28 SING N N 54 GHD C20 H33 SING N N 55 GHD C22 H35 SING N N 56 GHD C22 H36 SING N N 57 GHD C1 H3 SING N N 58 GHD C1 H1 SING N N 59 GHD C1 H2 SING N N 60 GHD C3 H5 SING N N 61 GHD O2 H8 SING N N 62 GHD O3 H10 SING N N 63 GHD O4 H13 SING N N 64 GHD C9 H15 SING N N 65 GHD C9 H14 SING N N 66 GHD C11 H17 SING N N 67 GHD C12 H18 SING N N 68 GHD O9 H20 SING N N 69 GHD C14 H21 SING N N 70 GHD C14 H22 SING N N 71 GHD O10 H23 SING N N 72 GHD O11 H25 SING N N 73 GHD C16 H26 SING N N 74 GHD O12 H27 SING N N 75 GHD C18 H29 SING N N 76 GHD O14 H30 SING N N 77 GHD C19 H31 SING N N 78 GHD O15 H32 SING N N 79 GHD O16 H34 SING N N 80 GHD O17 H39 SING N N 81 GHD C23 H37 SING N N 82 GHD O19 H38 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GHD InChI InChI 1.06 "InChI=1S/C23H39NO19/c1-7(28)24-13-8(29)2-23(22(38)39,43-20(13)15(34)10(31)4-26)40-6-12-16(35)17(36)18(37)21(41-12)42-19(11(32)5-27)14(33)9(30)3-25/h3,8-21,26-27,29-37H,2,4-6H2,1H3,(H,24,28)(H,38,39)/t8-,9-,10+,11+,12+,13-,14+,15+,16-,17-,18+,19-,20-,21-,23+/m0/s1" GHD InChIKey InChI 1.06 VMWYCXKMRSTDSP-DKHYMJAUSA-N GHD SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H]1[C@@H](O)C[C@@](OC[C@H]2O[C@@H](O[C@@H]([C@H](O)CO)[C@H](O)[C@@H](O)C=O)[C@H](O)[C@@H](O)[C@H]2O)(O[C@@H]1[C@H](O)[C@H](O)CO)C(O)=O" GHD SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)C[C](OC[CH]2O[CH](O[CH]([CH](O)CO)[CH](O)[CH](O)C=O)[CH](O)[CH](O)[CH]2O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O" GHD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H]1[C@H](C[C@@](O[C@@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]([C@@H](CO)O)[C@@H]([C@H](C=O)O)O)O)O)O)O" GHD SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)OCC2C(C(C(C(O2)OC(C(CO)O)C(C(C=O)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id GHD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S},5~{S},6~{S})-5-acetamido-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-2-[[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{R},5~{R})-1,2,4,5-tetrakis(oxidanyl)-6-oxidanylidene-hexan-3-yl]oxy-oxan-2-yl]methoxy]oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GHD "Create component" 2022-02-02 PDBE GHD "Modify descriptor" 2022-08-22 RCSB GHD "Initial release" 2022-12-07 RCSB #