data_GHV
#
_chem_comp.id GHV
_chem_comp.name "(2S)-2-[[(E)-3-[4-(dimethylamino)phenyl]prop-2-enoyl]amino]-N-[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-phenyl-propanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H34 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-08-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 478.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GHV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5C1U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GHV O1 O1 O 0 1 N N N N N N 13.528 -10.555 -4.154 7.632 -0.035 -1.551 O1 GHV 1
GHV C34 C1 C 0 1 N N N N N N 13.628 -9.357 -3.842 6.979 -1.057 -1.576 C34 GHV 2
GHV N33 N1 N 0 1 N N N N N N 14.704 -8.692 -3.514 7.273 -2.140 -2.315 N33 GHV 3
GHV C32 C2 C 0 1 N N N N N N 14.434 -7.307 -3.210 6.279 -3.203 -2.124 C32 GHV 4
GHV C31 C3 C 0 1 N N N N N N 13.004 -7.065 -3.805 5.525 -2.832 -0.827 C31 GHV 5
GHV C30 C4 C 0 1 N N S N N N 12.439 -8.438 -3.727 5.720 -1.301 -0.774 C30 GHV 6
GHV C29 C5 C 0 1 N N N N N N 11.457 -8.659 -4.882 5.906 -0.833 0.671 C29 GHV 7
GHV C26 C6 C 0 1 N N S N N N 10.210 -7.724 -4.877 4.585 -0.978 1.429 C26 GHV 8
GHV C27 C7 C 0 1 N N N N N N 9.267 -7.997 -6.082 4.801 -0.627 2.902 C27 GHV 9
GHV O28 O2 O 0 1 N N N N N N 8.321 -6.898 -6.251 5.374 0.678 3.002 O28 GHV 10
GHV N24 N2 N 0 1 N N N N N N 9.450 -7.829 -3.598 3.589 -0.072 0.851 N24 GHV 11
GHV C23 C8 C 0 1 N N N N N N 9.409 -6.796 -2.712 2.276 -0.360 0.955 C23 GHV 12
GHV O25 O3 O 0 1 N N N N N N 9.949 -5.716 -2.847 1.920 -1.369 1.526 O25 GHV 13
GHV C15 C9 C 0 1 N N S N N N 8.651 -7.040 -1.465 1.252 0.572 0.361 C15 GHV 14
GHV C16 C10 C 0 1 N N N N N N 7.253 -6.606 -1.577 1.380 1.952 1.011 C16 GHV 15
GHV C17 C11 C 0 1 Y N N N N N 6.276 -7.022 -0.529 0.441 2.916 0.333 C17 GHV 16
GHV C22 C12 C 0 1 Y N N N N N 5.482 -6.095 0.099 0.868 3.641 -0.763 C22 GHV 17
GHV C21 C13 C 0 1 Y N N N N N 4.588 -6.569 1.082 0.006 4.526 -1.385 C21 GHV 18
GHV C20 C14 C 0 1 Y N N N N N 4.441 -7.940 1.366 -1.283 4.683 -0.911 C20 GHV 19
GHV C19 C15 C 0 1 Y N N N N N 5.212 -8.888 0.678 -1.710 3.957 0.184 C19 GHV 20
GHV C18 C16 C 0 1 Y N N N N N 6.110 -8.375 -0.288 -0.850 3.070 0.803 C18 GHV 21
GHV N13 N3 N 0 1 N N N N N N 9.357 -6.626 -0.265 -0.091 0.041 0.605 N13 GHV 22
GHV C12 C17 C 0 1 N N N N N N 10.577 -7.129 0.026 -1.108 0.378 -0.213 C12 GHV 23
GHV O14 O4 O 0 1 N N N N N N 11.062 -8.041 -0.626 -0.911 1.124 -1.154 O14 GHV 24
GHV C11 C18 C 0 1 N N N N N N 11.306 -6.603 1.223 -2.449 -0.153 0.031 C11 GHV 25
GHV C10 C19 C 0 1 N N N N N N 12.510 -6.054 1.016 -3.468 0.185 -0.789 C10 GHV 26
GHV C5 C20 C 0 1 Y N N N N N 13.344 -5.531 2.127 -4.815 -0.348 -0.544 C5 GHV 27
GHV C6 C21 C 0 1 Y N N N N N 14.627 -6.078 2.340 -5.873 0.001 -1.393 C6 GHV 28
GHV C1 C22 C 0 1 Y N N N N N 15.431 -5.611 3.395 -7.128 -0.499 -1.161 C1 GHV 29
GHV C4 C23 C 0 1 Y N N N N N 12.863 -4.516 2.962 -5.043 -1.211 0.535 C4 GHV 30
GHV C3 C24 C 0 1 Y N N N N N 13.678 -4.047 4.007 -6.302 -1.706 0.759 C3 GHV 31
GHV C2 C25 C 0 1 Y N N N N N 14.970 -4.583 4.251 -7.352 -1.352 -0.084 C2 GHV 32
GHV N7 N4 N 0 1 N N N N N N 15.763 -4.070 5.342 -8.627 -1.857 0.148 N7 GHV 33
GHV C9 C26 C 0 1 N N N N N N 15.064 -4.221 6.644 -8.865 -2.755 1.281 C9 GHV 34
GHV C8 C27 C 0 1 N N N N N N 17.124 -4.651 5.467 -9.733 -1.490 -0.740 C8 GHV 35
GHV H1 H1 H 0 1 N N N N N N 15.617 -9.099 -3.478 8.043 -2.211 -2.901 H1 GHV 36
GHV H2 H2 H 0 1 N N N N N N 15.174 -6.649 -3.689 5.589 -3.230 -2.967 H2 GHV 37
GHV H3 H3 H 0 1 N N N N N N 14.440 -7.136 -2.123 6.774 -4.167 -2.011 H3 GHV 38
GHV H4 H4 H 0 1 N N N N N N 13.052 -6.705 -4.843 4.468 -3.088 -0.899 H4 GHV 39
GHV H5 H5 H 0 1 N N N N N N 12.427 -6.354 -3.196 5.984 -3.314 0.036 H5 GHV 40
GHV H6 H6 H 0 1 N N N N N N 11.928 -8.593 -2.765 4.871 -0.794 -1.233 H6 GHV 41
GHV H7 H7 H 0 1 N N N N N N 11.103 -9.699 -4.834 6.671 -1.442 1.154 H7 GHV 42
GHV H8 H8 H 0 1 N N N N N N 11.999 -8.499 -5.826 6.216 0.212 0.678 H8 GHV 43
GHV H9 H9 H 0 1 N N N N N N 10.575 -6.691 -4.974 4.231 -2.006 1.348 H9 GHV 44
GHV H10 H10 H 0 1 N N N N N N 8.711 -8.929 -5.902 3.844 -0.645 3.424 H10 GHV 45
GHV H11 H11 H 0 1 N N N N N N 9.869 -8.100 -6.997 5.474 -1.356 3.354 H11 GHV 46
GHV H12 H12 H 0 1 N N N N N N 7.753 -7.080 -6.990 5.539 0.967 3.910 H12 GHV 47
GHV H13 H13 H 0 1 N N N N N N 8.961 -8.675 -3.387 3.874 0.735 0.395 H13 GHV 48
GHV H14 H14 H 0 1 N N N N N N 8.594 -8.136 -1.390 1.419 0.659 -0.712 H14 GHV 49
GHV H15 H15 H 0 1 N N N N N N 7.258 -5.506 -1.593 1.127 1.880 2.068 H15 GHV 50
GHV H16 H16 H 0 1 N N N N N N 6.875 -6.985 -2.538 2.405 2.309 0.906 H16 GHV 51
GHV H17 H17 H 0 1 N N N N N N 5.539 -5.045 -0.149 1.875 3.518 -1.134 H17 GHV 52
GHV H18 H18 H 0 1 N N N N N N 3.996 -5.855 1.636 0.340 5.093 -2.241 H18 GHV 53
GHV H19 H19 H 0 1 N N N N N N 3.733 -8.262 2.115 -1.956 5.375 -1.397 H19 GHV 54
GHV H20 H20 H 0 1 N N N N N N 5.126 -9.947 0.874 -2.717 4.081 0.555 H20 GHV 55
GHV H21 H21 H 0 1 N N N N N N 6.695 -9.074 -0.866 -1.185 2.499 1.657 H21 GHV 56
GHV H22 H22 H 0 1 N N N N N N 8.936 -5.962 0.352 -0.249 -0.554 1.355 H22 GHV 57
GHV H23 H23 H 0 1 N N N N N N 10.879 -6.664 2.213 -2.624 -0.814 0.866 H23 GHV 58
GHV H24 H24 H 0 1 N N N N N N 12.887 -5.990 0.006 -3.292 0.847 -1.624 H24 GHV 59
GHV H25 H25 H 0 1 N N N N N N 14.993 -6.859 1.690 -5.700 0.663 -2.228 H25 GHV 60
GHV H26 H26 H 0 1 N N N N N N 16.409 -6.041 3.553 -7.944 -0.231 -1.815 H26 GHV 61
GHV H27 H27 H 0 1 N N N N N N 11.879 -4.099 2.806 -4.229 -1.486 1.189 H27 GHV 62
GHV H28 H28 H 0 1 N N N N N N 13.310 -3.255 4.643 -6.479 -2.372 1.591 H28 GHV 63
GHV H29 H29 H 0 1 N N N N N N 15.697 -3.820 7.449 -8.612 -2.243 2.210 H29 GHV 64
GHV H30 H30 H 0 1 N N N N N N 14.113 -3.669 6.616 -9.916 -3.044 1.301 H30 GHV 65
GHV H31 H31 H 0 1 N N N N N N 14.864 -5.286 6.831 -8.245 -3.645 1.176 H31 GHV 66
GHV H32 H32 H 0 1 N N N N N N 17.641 -4.195 6.324 -9.796 -2.208 -1.558 H32 GHV 67
GHV H33 H33 H 0 1 N N N N N N 17.046 -5.737 5.622 -10.667 -1.496 -0.179 H33 GHV 68
GHV H34 H34 H 0 1 N N N N N N 17.693 -4.452 4.547 -9.558 -0.493 -1.145 H34 GHV 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GHV O28 C27 SING N N 1
GHV C27 C26 SING N N 2
GHV C29 C26 SING N N 3
GHV C29 C30 SING N N 4
GHV C26 N24 SING N N 5
GHV O1 C34 DOUB N N 6
GHV C34 C30 SING N N 7
GHV C34 N33 SING N N 8
GHV C31 C30 SING N N 9
GHV C31 C32 SING N N 10
GHV N24 C23 SING N N 11
GHV N33 C32 SING N N 12
GHV O25 C23 DOUB N N 13
GHV C23 C15 SING N N 14
GHV C16 C15 SING N N 15
GHV C16 C17 SING N N 16
GHV C15 N13 SING N N 17
GHV O14 C12 DOUB N N 18
GHV C17 C18 DOUB Y N 19
GHV C17 C22 SING Y N 20
GHV C18 C19 SING Y N 21
GHV N13 C12 SING N N 22
GHV C12 C11 SING N N 23
GHV C22 C21 DOUB Y N 24
GHV C19 C20 DOUB Y N 25
GHV C10 C11 DOUB N E 26
GHV C10 C5 SING N N 27
GHV C21 C20 SING Y N 28
GHV C5 C6 DOUB Y N 29
GHV C5 C4 SING Y N 30
GHV C6 C1 SING Y N 31
GHV C4 C3 DOUB Y N 32
GHV C1 C2 DOUB Y N 33
GHV C3 C2 SING Y N 34
GHV C2 N7 SING N N 35
GHV N7 C8 SING N N 36
GHV N7 C9 SING N N 37
GHV N33 H1 SING N N 38
GHV C32 H2 SING N N 39
GHV C32 H3 SING N N 40
GHV C31 H4 SING N N 41
GHV C31 H5 SING N N 42
GHV C30 H6 SING N N 43
GHV C29 H7 SING N N 44
GHV C29 H8 SING N N 45
GHV C26 H9 SING N N 46
GHV C27 H10 SING N N 47
GHV C27 H11 SING N N 48
GHV O28 H12 SING N N 49
GHV N24 H13 SING N N 50
GHV C15 H14 SING N N 51
GHV C16 H15 SING N N 52
GHV C16 H16 SING N N 53
GHV C22 H17 SING N N 54
GHV C21 H18 SING N N 55
GHV C20 H19 SING N N 56
GHV C19 H20 SING N N 57
GHV C18 H21 SING N N 58
GHV N13 H22 SING N N 59
GHV C11 H23 SING N N 60
GHV C10 H24 SING N N 61
GHV C6 H25 SING N N 62
GHV C1 H26 SING N N 63
GHV C4 H27 SING N N 64
GHV C3 H28 SING N N 65
GHV C9 H29 SING N N 66
GHV C9 H30 SING N N 67
GHV C9 H31 SING N N 68
GHV C8 H32 SING N N 69
GHV C8 H33 SING N N 70
GHV C8 H34 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GHV InChI InChI 1.03 "InChI=1S/C27H34N4O4/c1-31(2)23-11-8-19(9-12-23)10-13-25(33)30-24(16-20-6-4-3-5-7-20)27(35)29-22(18-32)17-21-14-15-28-26(21)34/h3-13,21-22,24,32H,14-18H2,1-2H3,(H,28,34)(H,29,35)(H,30,33)/b13-10+/t21-,22-,24-/m0/s1"
GHV InChIKey InChI 1.03 MMLGNYLPTJZWEN-XNUWVNOVSA-N
GHV SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc(\C=C\C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)cc1"
GHV SMILES CACTVS 3.385 "CN(C)c1ccc(C=CC(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CO)C[CH]3CCNC3=O)cc1"
GHV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc(cc1)/C=C/C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO"
GHV SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc(cc1)C=CC(=O)NC(Cc2ccccc2)C(=O)NC(CC3CCNC3=O)CO"
#
_pdbx_chem_comp_identifier.comp_id GHV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(~{E})-3-[4-(dimethylamino)phenyl]prop-2-enoyl]amino]-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-phenyl-propanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GHV "Create component" 2012-08-13 PDBJ
GHV "Initial release" 2016-06-01 RCSB
GHV "Modify descriptor" 2020-08-25 PDBJ
GHV "Modify formula" 2020-08-25 PDBJ
GHV "Modify name" 2020-08-25 PDBJ
GHV "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id GHV
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C27
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#