data_GII # _chem_comp.id GII _chem_comp.name "(2R,3R,4R,5S)-1-[6-(4-azido-2-nitroanilino)hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-24 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GII _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T68 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GII N1 N1 N 0 1 N N N -35.704 -30.453 -68.725 5.010 0.125 -0.069 N1 GII 1 GII N3 N2 N 1 1 N N N -43.273 -25.506 -63.462 -5.865 2.453 0.561 N3 GII 2 GII C4 C1 C 0 1 N N N -34.007 -28.754 -68.110 6.095 2.188 -0.820 C4 GII 3 GII C5 C2 C 0 1 N N N -36.601 -29.817 -68.216 3.802 0.916 0.199 C5 GII 4 GII C6 C3 C 0 1 N N N -36.898 -30.261 -66.673 2.563 0.056 -0.058 C6 GII 5 GII C7 C4 C 0 1 N N N -37.707 -29.243 -65.842 1.304 0.880 0.221 C7 GII 6 GII C8 C5 C 0 1 N N N -38.203 -29.788 -64.440 0.064 0.020 -0.036 C8 GII 7 GII C10 C6 C 0 1 N N N -40.515 -28.648 -64.834 -2.434 -0.016 -0.014 C10 GII 8 GII C13 C7 C 0 1 Y N N -44.740 -25.858 -65.520 -7.255 0.496 0.082 C13 GII 9 GII C15 C8 C 0 1 Y N N -44.287 -27.668 -67.110 -6.169 -1.754 -0.375 C15 GII 10 GII C17 C9 C 0 1 N N N -35.989 -31.890 -68.832 5.071 -1.056 0.801 C17 GII 11 GII C1 C10 C 0 1 N N R -33.696 -32.403 -69.262 7.551 -1.115 0.520 C1 GII 12 GII C11 C11 C 0 1 Y N N -42.844 -27.383 -65.116 -4.872 0.211 0.090 C11 GII 13 GII C12 C12 C 0 1 Y N N -43.613 -26.265 -64.714 -6.018 1.017 0.236 C12 GII 14 GII C14 C13 C 0 1 Y N N -45.078 -26.554 -66.716 -7.395 -0.940 -0.237 C14 GII 15 GII C16 C14 C 0 1 Y N N -43.187 -28.086 -66.318 -4.966 -1.163 -0.207 C16 GII 16 GII C18 C15 C 0 1 N N S -35.008 -32.490 -69.839 6.261 -1.929 0.396 C18 GII 17 GII C2 C16 C 0 1 N N R -33.376 -30.987 -69.098 7.443 0.135 -0.359 C2 GII 18 GII C3 C17 C 0 1 N N R -34.379 -30.292 -68.157 6.219 0.948 0.068 C3 GII 19 GII C9 C18 C 0 1 N N N -39.372 -28.911 -63.820 -1.194 0.844 0.243 C9 GII 20 GII N2 N3 N 0 1 N N N -41.642 -27.851 -64.270 -3.639 0.772 0.253 N2 GII 21 GII N4 N4 N 0 1 N N N -46.226 -26.132 -67.554 -8.574 -1.478 -0.392 N4 GII 22 GII N5 N5 N 1 1 N N N -47.271 -25.312 -67.049 -8.666 -2.572 -0.634 N5 GII 23 GII N6 N6 N -1 1 N N N -48.506 -25.543 -67.747 -8.757 -3.665 -0.876 N6 GII 24 GII O1 O1 O 0 1 N N N -32.725 -33.137 -70.132 8.660 -1.906 0.090 O1 GII 25 GII O2 O2 O 0 1 N N N -32.026 -30.844 -68.640 8.621 0.929 -0.205 O2 GII 26 GII O3 O3 O 0 1 N N N -34.090 -28.233 -69.423 6.033 1.787 -2.191 O3 GII 27 GII O4 O4 O -1 1 N N N -42.451 -26.074 -62.461 -4.884 3.148 0.024 O4 GII 28 GII O5 O5 O 0 1 N N N -43.751 -24.221 -63.251 -6.710 3.034 1.386 O5 GII 29 GII O6 O6 O 0 1 N N N -35.298 -33.897 -70.087 6.331 -3.069 1.256 O6 GII 30 GII H2 H2 H 0 1 N N N -32.984 -28.631 -67.726 5.188 2.733 -0.559 H2 GII 31 GII H3 H3 H 0 1 N N N -34.711 -28.222 -67.454 6.962 2.831 -0.669 H3 GII 32 GII H4 H4 H 0 1 N N N -36.327 -28.752 -68.228 3.806 1.244 1.239 H4 GII 33 GII H5 H5 H 0 1 N N N -37.517 -29.967 -68.807 3.783 1.786 -0.457 H5 GII 34 GII H6 H6 H 0 1 N N N -37.459 -31.207 -66.693 2.558 -0.273 -1.098 H6 GII 35 GII H7 H7 H 0 1 N N N -35.932 -30.418 -66.172 2.581 -0.814 0.598 H7 GII 36 GII H8 H8 H 0 1 N N N -37.072 -28.363 -65.664 1.308 1.208 1.260 H8 GII 37 GII H9 H9 H 0 1 N N N -38.590 -28.946 -66.427 1.285 1.750 -0.435 H9 GII 38 GII H10 H10 H 0 1 N N N -38.567 -30.818 -64.572 0.060 -0.309 -1.076 H10 GII 39 GII H11 H11 H 0 1 N N N -37.353 -29.786 -63.741 0.083 -0.850 0.620 H11 GII 40 GII H12 H12 H 0 1 N N N -40.910 -29.617 -65.172 -2.438 -0.345 -1.054 H12 GII 41 GII H13 H13 H 0 1 N N N -40.099 -28.102 -65.693 -2.415 -0.886 0.642 H13 GII 42 GII H14 H14 H 0 1 N N N -45.336 -25.012 -65.211 -8.129 1.120 0.195 H14 GII 43 GII H15 H15 H 0 1 N N N -44.526 -28.200 -68.019 -6.234 -2.806 -0.607 H15 GII 44 GII H16 H16 H 0 1 N N N -37.021 -32.041 -69.180 5.189 -0.739 1.837 H16 GII 45 GII H17 H17 H 0 1 N N N -35.859 -32.371 -67.851 4.149 -1.629 0.700 H17 GII 46 GII H18 H18 H 0 1 N N N -33.705 -32.882 -68.272 7.696 -0.818 1.559 H18 GII 47 GII H19 H19 H 0 1 N N N -42.602 -28.941 -66.623 -4.065 -1.750 -0.306 H19 GII 48 GII H20 H20 H 0 1 N N N -35.056 -31.919 -70.778 6.136 -2.259 -0.636 H20 GII 49 GII H21 H21 H 0 1 N N N -33.464 -30.501 -70.081 7.338 -0.162 -1.402 H21 GII 50 GII H22 H22 H 0 1 N N N -34.316 -30.721 -67.146 6.332 1.256 1.108 H22 GII 51 GII H23 H23 H 0 1 N N N -38.956 -27.945 -63.498 -1.190 1.172 1.283 H23 GII 52 GII H24 H24 H 0 1 N N N -39.787 -29.440 -62.949 -1.213 1.714 -0.413 H24 GII 53 GII H25 H25 H 0 1 N N N -41.231 -27.021 -63.892 -3.561 1.694 0.547 H25 GII 54 GII H30 H30 H 0 1 N N N -31.855 -33.082 -69.753 8.789 -2.716 0.603 H30 GII 55 GII H31 H31 H 0 1 N N N -31.823 -29.922 -68.535 9.437 0.475 -0.455 H31 GII 56 GII H32 H32 H 0 1 N N N -33.869 -27.309 -69.412 5.953 2.523 -2.812 H32 GII 57 GII H33 H33 H 0 1 N N N -36.164 -33.980 -70.470 5.545 -3.631 1.228 H33 GII 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GII O1 C1 SING N N 1 GII O6 C18 SING N N 2 GII C18 C1 SING N N 3 GII C18 C17 SING N N 4 GII O3 C4 SING N N 5 GII C1 C2 SING N N 6 GII C2 O2 SING N N 7 GII C2 C3 SING N N 8 GII C17 N1 SING N N 9 GII N1 C5 SING N N 10 GII N1 C3 SING N N 11 GII C5 C6 SING N N 12 GII C3 C4 SING N N 13 GII N6 N5 DOUB N N 14 GII N4 N5 DOUB N N 15 GII N4 C14 SING N N 16 GII C15 C14 DOUB Y N 17 GII C15 C16 SING Y N 18 GII C14 C13 SING Y N 19 GII C6 C7 SING N N 20 GII C16 C11 DOUB Y N 21 GII C7 C8 SING N N 22 GII C13 C12 DOUB Y N 23 GII C11 C12 SING Y N 24 GII C11 N2 SING N N 25 GII C10 N2 SING N N 26 GII C10 C9 SING N N 27 GII C12 N3 SING N N 28 GII C8 C9 SING N N 29 GII N3 O5 DOUB N N 30 GII N3 O4 SING N N 31 GII C4 H2 SING N N 32 GII C4 H3 SING N N 33 GII C5 H4 SING N N 34 GII C5 H5 SING N N 35 GII C6 H6 SING N N 36 GII C6 H7 SING N N 37 GII C7 H8 SING N N 38 GII C7 H9 SING N N 39 GII C8 H10 SING N N 40 GII C8 H11 SING N N 41 GII C10 H12 SING N N 42 GII C10 H13 SING N N 43 GII C13 H14 SING N N 44 GII C15 H15 SING N N 45 GII C17 H16 SING N N 46 GII C17 H17 SING N N 47 GII C1 H18 SING N N 48 GII C16 H19 SING N N 49 GII C18 H20 SING N N 50 GII C2 H21 SING N N 51 GII C3 H22 SING N N 52 GII C9 H23 SING N N 53 GII C9 H24 SING N N 54 GII N2 H25 SING N N 55 GII O1 H30 SING N N 56 GII O2 H31 SING N N 57 GII O3 H32 SING N N 58 GII O6 H33 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GII SMILES ACDLabs 12.01 "[O-][N+](=O)c1cc(\N=[N+]=[N-])ccc1NCCCCCCN1CC(O)C(O)C(O)C1CO" GII InChI InChI 1.03 "InChI=1S/C18H28N6O6/c19-22-21-12-5-6-13(14(9-12)24(29)30)20-7-3-1-2-4-8-23-10-16(26)18(28)17(27)15(23)11-25/h5-6,9,15-18,20,25-28H,1-4,7-8,10-11H2/t15-,16+,17-,18-/m1/s1" GII InChIKey InChI 1.03 WSZFAXCTHDAHNX-XMTFNYHQSA-N GII SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-]" GII SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-]" GII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O" GII SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCCCN2CC(C(C(C2CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GII "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-[6-(4-azido-2-nitroanilino)hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" GII "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[6-[(4-azido-2-nitro-phenyl)amino]hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GII "Create component" 2021-12-24 RCSB GII "Initial release" 2022-05-04 RCSB ##