data_GJ3 # _chem_comp.id GJ3 _chem_comp.name "benzyl [(2S,3R)-1-{[(2S)-1-(2-acetyl-2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}hydrazinyl)-3-cyclohexyl-1-oxopropan-2-yl]amino}-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H49 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-03 _chem_comp.pdbx_modified_date 2023-04-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 615.761 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SH8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GJ3 N N1 N 0 1 N N N -9.936 -15.188 -18.130 -0.474 -0.332 -0.667 N GJ3 1 GJ3 C C1 C 0 1 N N S -9.934 -17.610 -18.202 1.952 -0.729 -0.942 C GJ3 2 GJ3 O O1 O 0 1 N N N -10.728 -16.326 -16.368 0.967 0.612 0.731 O GJ3 3 GJ3 C1 C2 C 0 1 N N N -10.222 -16.317 -17.480 0.780 -0.101 -0.232 C1 GJ3 4 GJ3 C10 C3 C 0 1 N N N -15.160 -15.896 -14.797 -6.825 1.506 0.274 C10 GJ3 5 GJ3 C11 C4 C 0 1 N N N -9.436 -12.796 -18.381 -1.841 1.691 -0.520 C11 GJ3 6 GJ3 C12 C5 C 0 1 N N N -8.031 -12.340 -17.940 -0.638 2.571 -0.173 C12 GJ3 7 GJ3 C13 C6 C 0 1 N N R -11.257 -18.298 -18.510 1.819 -2.253 -0.897 C13 GJ3 8 GJ3 C14 C7 C 0 1 N N N -12.233 -17.263 -19.083 3.067 -2.892 -1.507 C14 GJ3 9 GJ3 C15 C8 C 0 1 N N N -7.883 -18.894 -17.725 4.353 -0.320 -0.972 C15 GJ3 10 GJ3 C16 C9 C 0 1 N N N -5.883 -20.201 -17.079 6.706 0.033 -1.170 C16 GJ3 11 GJ3 C17 C10 C 0 1 N N N -11.703 -20.601 -19.323 0.740 -3.738 0.645 C17 GJ3 12 GJ3 C18 C11 C 0 1 N N N -11.801 -21.151 -20.744 0.664 -4.101 2.129 C18 GJ3 13 GJ3 C19 C12 C 0 1 N N N -13.108 -20.452 -18.736 1.188 -4.962 -0.157 C19 GJ3 14 GJ3 C2 C13 C 0 1 N N S -10.085 -13.883 -17.511 -1.613 0.279 0.023 C2 GJ3 15 GJ3 C20 C14 C 0 1 N N N -10.932 -21.575 -18.435 -0.639 -3.287 0.158 C20 GJ3 16 GJ3 C21 C15 C 0 1 N N N -7.229 -11.967 -19.189 -0.544 2.732 1.345 C21 GJ3 17 GJ3 C22 C16 C 0 1 N N N -5.700 -11.992 -19.031 0.659 3.612 1.692 C22 GJ3 18 GJ3 C23 C17 C 0 1 N N N -5.255 -11.926 -17.575 0.488 4.987 1.043 C23 GJ3 19 GJ3 C24 C18 C 0 1 N N N -5.821 -13.113 -16.804 0.394 4.826 -0.476 C24 GJ3 20 GJ3 C25 C19 C 0 1 N N N -7.318 -13.366 -17.044 -0.809 3.946 -0.822 C25 GJ3 21 GJ3 C26 C20 C 0 1 Y N N -5.832 -21.388 -18.013 7.876 0.472 -0.328 C26 GJ3 22 GJ3 C27 C21 C 0 1 Y N N -5.954 -22.679 -17.492 8.610 -0.463 0.377 C27 GJ3 23 GJ3 C28 C22 C 0 1 Y N N -5.899 -23.771 -18.363 9.683 -0.060 1.150 C28 GJ3 24 GJ3 C29 C23 C 0 1 Y N N -5.736 -23.579 -19.733 10.022 1.279 1.217 C29 GJ3 25 GJ3 C3 C24 C 0 1 N N N -11.557 -13.618 -17.310 -2.847 -0.554 -0.209 C3 GJ3 26 GJ3 C30 C25 C 0 1 Y N N -5.614 -22.290 -20.248 9.288 2.214 0.512 C30 GJ3 27 GJ3 C31 C26 C 0 1 Y N N -5.654 -21.192 -19.393 8.218 1.810 -0.266 C31 GJ3 28 GJ3 C32 C27 C 0 1 N N N -12.659 -10.566 -15.471 -4.473 -2.383 2.015 C32 GJ3 29 GJ3 C5 C28 C 0 1 N N N -13.593 -11.640 -15.897 -5.394 -2.053 0.869 C5 GJ3 30 GJ3 C6 C29 C 0 1 N N N -13.980 -13.847 -14.981 -6.127 -0.574 -0.924 C6 GJ3 31 GJ3 C7 C30 C 0 1 N N S -14.265 -15.121 -15.734 -7.295 0.183 -0.290 C7 GJ3 32 GJ3 C8 C31 C 0 1 N N N -15.139 -15.021 -16.961 -8.332 0.578 -1.367 C8 GJ3 33 GJ3 C9 C32 C 0 1 N N N -16.018 -16.280 -16.864 -8.797 1.962 -0.865 C9 GJ3 34 GJ3 N1 N2 N 0 1 N N N -11.909 -13.249 -16.077 -4.023 -0.182 0.334 N1 GJ3 35 GJ3 N2 N3 N 0 1 N N N -16.076 -16.585 -15.446 -7.684 2.484 -0.063 N2 GJ3 36 GJ3 N3 N4 N 0 1 N N N -9.125 -18.524 -17.428 3.196 -0.328 -0.282 N3 GJ3 37 GJ3 N4 N5 N 0 1 N N N -13.148 -12.911 -15.708 -5.170 -0.957 0.118 N4 GJ3 38 GJ3 O1 O2 O 0 1 N N N -12.350 -13.778 -18.244 -2.782 -1.559 -0.885 O1 GJ3 39 GJ3 O2 O3 O 0 1 N N N -14.723 -11.439 -16.369 -6.337 -2.776 0.621 O2 GJ3 40 GJ3 O3 O4 O 0 1 N N N -14.988 -15.876 -13.596 -5.822 1.661 0.938 O3 GJ3 41 GJ3 O4 O5 O 0 1 N N N -10.987 -19.355 -19.442 1.680 -2.678 0.461 O4 GJ3 42 GJ3 O5 O6 O 0 1 N N N -7.247 -19.846 -16.832 5.497 0.049 -0.365 O5 GJ3 43 GJ3 O6 O7 O 0 1 N N N -7.250 -18.489 -18.705 4.365 -0.647 -2.143 O6 GJ3 44 GJ3 H1 H1 H 0 1 N N N -9.609 -15.242 -19.073 -0.623 -0.899 -1.440 H1 GJ3 45 GJ3 H2 H2 H 0 1 N N N -9.428 -17.381 -19.151 1.968 -0.397 -1.980 H2 GJ3 46 GJ3 H3 H3 H 0 1 N N N -10.096 -11.916 -18.371 -2.740 2.112 -0.070 H3 GJ3 47 GJ3 H4 H4 H 0 1 N N N -9.359 -13.185 -19.407 -1.961 1.649 -1.602 H4 GJ3 48 GJ3 H5 H5 H 0 1 N N N -8.158 -11.422 -17.347 0.273 2.104 -0.547 H5 GJ3 49 GJ3 H6 H6 H 0 1 N N N -11.676 -18.707 -17.579 0.939 -2.558 -1.464 H6 GJ3 50 GJ3 H7 H7 H 0 1 N N N -12.411 -16.474 -18.338 3.952 -2.536 -0.980 H7 GJ3 51 GJ3 H8 H8 H 0 1 N N N -11.803 -16.818 -19.992 3.002 -3.977 -1.416 H8 GJ3 52 GJ3 H9 H9 H 0 1 N N N -13.185 -17.755 -19.330 3.137 -2.620 -2.560 H9 GJ3 53 GJ3 H10 H10 H 0 1 N N N -5.394 -20.461 -16.129 6.589 0.713 -2.014 H10 GJ3 54 GJ3 H11 H11 H 0 1 N N N -5.360 -19.350 -17.539 6.883 -0.977 -1.539 H11 GJ3 55 GJ3 H12 H12 H 0 1 N N N -12.340 -22.110 -20.730 1.646 -4.422 2.475 H12 GJ3 56 GJ3 H13 H13 H 0 1 N N N -12.344 -20.434 -21.378 0.345 -3.229 2.700 H13 GJ3 57 GJ3 H14 H14 H 0 1 N N N -10.790 -21.305 -21.148 -0.053 -4.909 2.269 H14 GJ3 58 GJ3 H15 H15 H 0 1 N N N -13.038 -20.056 -17.712 1.219 -4.711 -1.217 H15 GJ3 59 GJ3 H16 H16 H 0 1 N N N -13.694 -19.759 -19.358 2.180 -5.269 0.173 H16 GJ3 60 GJ3 H17 H17 H 0 1 N N N -13.603 -21.434 -18.716 0.483 -5.779 0.002 H17 GJ3 61 GJ3 H18 H18 H 0 1 N N N -9.589 -13.884 -16.529 -1.405 0.330 1.092 H18 GJ3 62 GJ3 H19 H19 H 0 1 N N N -10.867 -21.169 -17.415 -1.356 -4.096 0.299 H19 GJ3 63 GJ3 H20 H20 H 0 1 N N N -11.455 -22.543 -18.412 -0.958 -2.415 0.729 H20 GJ3 64 GJ3 H21 H21 H 0 1 N N N -9.918 -21.715 -18.839 -0.585 -3.029 -0.899 H21 GJ3 65 GJ3 H22 H22 H 0 1 N N N -7.521 -10.949 -19.487 -1.455 3.199 1.719 H22 GJ3 66 GJ3 H23 H23 H 0 1 N N N -7.498 -12.674 -19.987 -0.422 1.752 1.807 H23 GJ3 67 GJ3 H24 H24 H 0 1 N N N -5.316 -12.923 -19.474 0.726 3.726 2.773 H24 GJ3 68 GJ3 H25 H25 H 0 1 N N N -5.277 -11.129 -19.567 1.570 3.145 1.318 H25 GJ3 69 GJ3 H26 H26 H 0 1 N N N -4.156 -11.951 -17.528 -0.423 5.454 1.416 H26 GJ3 70 GJ3 H27 H27 H 0 1 N N N -5.620 -10.991 -17.124 1.345 5.614 1.290 H27 GJ3 71 GJ3 H28 H28 H 0 1 N N N -5.267 -14.015 -17.104 0.273 5.806 -0.938 H28 GJ3 72 GJ3 H29 H29 H 0 1 N N N -5.670 -12.930 -15.730 1.306 4.359 -0.849 H29 GJ3 73 GJ3 H30 H30 H 0 1 N N N -7.822 -13.369 -16.066 -0.876 3.832 -1.904 H30 GJ3 74 GJ3 H31 H31 H 0 1 N N N -7.423 -14.355 -17.513 -1.720 4.413 -0.449 H31 GJ3 75 GJ3 H32 H32 H 0 1 N N N -6.089 -22.831 -16.431 8.345 -1.509 0.324 H32 GJ3 76 GJ3 H33 H33 H 0 1 N N N -5.984 -24.773 -17.970 10.256 -0.790 1.701 H33 GJ3 77 GJ3 H34 H34 H 0 1 N N N -5.704 -24.430 -20.397 10.860 1.594 1.821 H34 GJ3 78 GJ3 H35 H35 H 0 1 N N N -5.488 -22.143 -21.311 9.552 3.260 0.565 H35 GJ3 79 GJ3 H36 H36 H 0 1 N N N -5.549 -20.193 -19.789 7.645 2.541 -0.817 H36 GJ3 80 GJ3 H37 H37 H 0 1 N N N -13.126 -9.585 -15.640 -3.692 -1.626 2.082 H37 GJ3 81 GJ3 H38 H38 H 0 1 N N N -12.429 -10.683 -14.402 -5.043 -2.401 2.945 H38 GJ3 82 GJ3 H39 H39 H 0 1 N Y N -11.730 -10.635 -16.056 -4.020 -3.360 1.848 H39 GJ3 83 GJ3 H40 H40 H 0 1 N N N -14.938 -13.356 -14.755 -6.501 -1.470 -1.420 H40 GJ3 84 GJ3 H41 H41 H 0 1 N N N -13.470 -14.106 -14.041 -5.632 0.066 -1.654 H41 GJ3 85 GJ3 H42 H42 H 0 1 N N N -13.339 -15.674 -15.949 -7.762 -0.420 0.489 H42 GJ3 86 GJ3 H43 H43 H 0 1 N N N -14.534 -15.031 -17.879 -7.861 0.656 -2.347 H43 GJ3 87 GJ3 H44 H44 H 0 1 N N N -15.752 -14.108 -16.936 -9.163 -0.128 -1.391 H44 GJ3 88 GJ3 H45 H45 H 0 1 N N N -17.025 -16.080 -17.259 -8.998 2.622 -1.709 H45 GJ3 89 GJ3 H46 H46 H 0 1 N N N -15.564 -17.113 -17.421 -9.688 1.859 -0.245 H46 GJ3 90 GJ3 H47 H47 H 0 1 N N N -11.194 -13.224 -15.379 -4.075 0.621 0.875 H47 GJ3 91 GJ3 H48 H48 H 0 1 N N N -16.718 -17.225 -15.023 -7.578 3.415 0.187 H48 GJ3 92 GJ3 H49 H49 H 0 1 N N N -9.533 -18.910 -16.601 3.187 -0.067 0.652 H49 GJ3 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GJ3 C18 C17 SING N N 1 GJ3 C30 C29 DOUB Y N 2 GJ3 C30 C31 SING Y N 3 GJ3 C29 C28 SING Y N 4 GJ3 O4 C17 SING N N 5 GJ3 O4 C13 SING N N 6 GJ3 C31 C26 DOUB Y N 7 GJ3 C17 C19 SING N N 8 GJ3 C17 C20 SING N N 9 GJ3 C21 C22 SING N N 10 GJ3 C21 C12 SING N N 11 GJ3 C14 C13 SING N N 12 GJ3 C22 C23 SING N N 13 GJ3 O6 C15 DOUB N N 14 GJ3 C13 C SING N N 15 GJ3 C11 C12 SING N N 16 GJ3 C11 C2 SING N N 17 GJ3 C28 C27 DOUB Y N 18 GJ3 O1 C3 DOUB N N 19 GJ3 C C1 SING N N 20 GJ3 C N3 SING N N 21 GJ3 N C2 SING N N 22 GJ3 N C1 SING N N 23 GJ3 C26 C27 SING Y N 24 GJ3 C26 C16 SING N N 25 GJ3 C12 C25 SING N N 26 GJ3 C15 N3 SING N N 27 GJ3 C15 O5 SING N N 28 GJ3 C23 C24 SING N N 29 GJ3 C2 C3 SING N N 30 GJ3 C1 O DOUB N N 31 GJ3 C3 N1 SING N N 32 GJ3 C16 O5 SING N N 33 GJ3 C25 C24 SING N N 34 GJ3 C8 C9 SING N N 35 GJ3 C8 C7 SING N N 36 GJ3 C9 N2 SING N N 37 GJ3 O2 C5 DOUB N N 38 GJ3 N1 N4 SING N N 39 GJ3 C5 N4 SING N N 40 GJ3 C5 C32 SING N N 41 GJ3 C7 C6 SING N N 42 GJ3 C7 C10 SING N N 43 GJ3 N4 C6 SING N N 44 GJ3 N2 C10 SING N N 45 GJ3 C10 O3 DOUB N N 46 GJ3 N H1 SING N N 47 GJ3 C H2 SING N N 48 GJ3 C11 H3 SING N N 49 GJ3 C11 H4 SING N N 50 GJ3 C12 H5 SING N N 51 GJ3 C13 H6 SING N N 52 GJ3 C14 H7 SING N N 53 GJ3 C14 H8 SING N N 54 GJ3 C14 H9 SING N N 55 GJ3 C16 H10 SING N N 56 GJ3 C16 H11 SING N N 57 GJ3 C18 H12 SING N N 58 GJ3 C18 H13 SING N N 59 GJ3 C18 H14 SING N N 60 GJ3 C19 H15 SING N N 61 GJ3 C19 H16 SING N N 62 GJ3 C19 H17 SING N N 63 GJ3 C2 H18 SING N N 64 GJ3 C20 H19 SING N N 65 GJ3 C20 H20 SING N N 66 GJ3 C20 H21 SING N N 67 GJ3 C21 H22 SING N N 68 GJ3 C21 H23 SING N N 69 GJ3 C22 H24 SING N N 70 GJ3 C22 H25 SING N N 71 GJ3 C23 H26 SING N N 72 GJ3 C23 H27 SING N N 73 GJ3 C24 H28 SING N N 74 GJ3 C24 H29 SING N N 75 GJ3 C25 H30 SING N N 76 GJ3 C25 H31 SING N N 77 GJ3 C27 H32 SING N N 78 GJ3 C28 H33 SING N N 79 GJ3 C29 H34 SING N N 80 GJ3 C30 H35 SING N N 81 GJ3 C31 H36 SING N N 82 GJ3 C32 H37 SING N N 83 GJ3 C32 H38 SING N N 84 GJ3 C32 H39 SING N N 85 GJ3 C6 H40 SING N N 86 GJ3 C6 H41 SING N N 87 GJ3 C7 H42 SING N N 88 GJ3 C8 H43 SING N N 89 GJ3 C8 H44 SING N N 90 GJ3 C9 H45 SING N N 91 GJ3 C9 H46 SING N N 92 GJ3 N1 H47 SING N N 93 GJ3 N2 H48 SING N N 94 GJ3 N3 H49 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GJ3 SMILES ACDLabs 12.01 "CC(C)(C)OC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCCCC1)C(=O)NN(CC1CCNC1=O)C(C)=O" GJ3 InChI InChI 1.03 "InChI=1S/C32H49N5O7/c1-21(44-32(3,4)5)27(35-31(42)43-20-24-14-10-7-11-15-24)30(41)34-26(18-23-12-8-6-9-13-23)29(40)36-37(22(2)38)19-25-16-17-33-28(25)39/h7,10-11,14-15,21,23,25-27H,6,8-9,12-13,16-20H2,1-5H3,(H,33,39)(H,34,41)(H,35,42)(H,36,40)/t21-,25+,26+,27+/m1/s1" GJ3 InChIKey InChI 1.03 LQGMWKMFHKDJKF-FBZFJNBBSA-N GJ3 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(=O)NN(C[C@@H]3CCNC3=O)C(C)=O" GJ3 SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(=O)NN(C[CH]3CCNC3=O)C(C)=O" GJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)NN(C[C@@H]2CCNC2=O)C(=O)C)NC(=O)OCc3ccccc3)OC(C)(C)C" GJ3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCCCC1)C(=O)NN(CC2CCNC2=O)C(=O)C)NC(=O)OCc3ccccc3)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GJ3 "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [(2S,3R)-1-{[(2S)-1-(2-acetyl-2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}hydrazinyl)-3-cyclohexyl-1-oxopropan-2-yl]amino}-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)" GJ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-3-cyclohexyl-1-[2-ethanoyl-2-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]hydrazinyl]-1-oxidanylidene-propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GJ3 "Create component" 2022-01-03 RCSB GJ3 "Initial release" 2023-04-12 RCSB #