data_GJ9 # _chem_comp.id GJ9 _chem_comp.name "(1R)-4-[7-(3-carboxypropoxy)-6-methylquinolin-8-yl]-1-{[2-(4-hydroxypiperidin-1-yl)-1,3-thiazol-4-yl]methyl}-1,4-diazepan-1-ium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-01-03 _chem_comp.pdbx_modified_date 2022-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.697 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GJ9 C02 C1 C 0 1 N N N 166.126 164.801 182.536 7.063 0.428 2.551 C02 GJ9 1 GJ9 C03 C2 C 0 1 N N N 166.606 163.796 181.506 6.950 -0.909 1.813 C03 GJ9 2 GJ9 C04 C3 C 0 1 N N N 166.131 164.160 180.106 6.366 -0.668 0.419 C04 GJ9 3 GJ9 C06 C4 C 0 1 Y N N 164.174 164.344 178.757 4.428 0.068 -0.695 C06 GJ9 4 GJ9 C08 C5 C 0 1 Y N N 163.870 164.168 176.519 2.821 0.606 -2.146 C08 GJ9 5 GJ9 C09 C6 C 0 1 N N N 164.158 163.680 175.106 1.476 1.165 -2.530 C09 GJ9 6 GJ9 C11 C7 C 0 1 N N N 162.274 162.034 174.541 0.348 -0.199 -1.011 C11 GJ9 7 GJ9 C12 C8 C 0 1 N N N 161.630 160.761 175.108 -0.654 -1.342 -0.758 C12 GJ9 8 GJ9 C14 C9 C 0 1 Y N N 161.938 158.406 175.800 -2.780 -1.380 0.229 C14 GJ9 9 GJ9 C15 C10 C 0 1 Y N N 162.605 158.596 177.076 -3.064 -2.760 0.199 C15 GJ9 10 GJ9 C17 C11 C 0 1 Y N N 164.044 159.835 178.461 -2.857 -4.823 -0.816 C17 GJ9 11 GJ9 C18 C12 C 0 1 Y N N 163.891 158.953 179.560 -3.630 -5.440 0.164 C18 GJ9 12 GJ9 C19 C13 C 0 1 Y N N 163.071 157.886 179.372 -4.140 -4.702 1.195 C19 GJ9 13 GJ9 C20 C14 C 0 1 Y N N 162.412 157.686 178.132 -3.859 -3.324 1.229 C20 GJ9 14 GJ9 C21 C15 C 0 1 Y N N 161.566 156.585 177.943 -4.348 -2.505 2.259 C21 GJ9 15 GJ9 C22 C16 C 0 1 Y N N 160.927 156.375 176.760 -4.060 -1.174 2.266 C22 GJ9 16 GJ9 C23 C17 C 0 1 N N N 160.055 155.176 176.674 -4.590 -0.304 3.376 C23 GJ9 17 GJ9 C24 C18 C 0 1 Y N N 161.101 157.283 175.666 -3.280 -0.605 1.258 C24 GJ9 18 GJ9 C26 C19 C 0 1 N N N 160.937 155.988 173.634 -3.928 1.594 0.623 C26 GJ9 19 GJ9 C27 C20 C 0 1 N N N 161.491 156.583 172.328 -3.459 3.043 0.766 C27 GJ9 20 GJ9 C28 C21 C 0 1 N N N 160.919 155.863 171.096 -4.444 3.970 0.051 C28 GJ9 21 GJ9 C29 C22 C 0 1 N N N 161.225 156.633 169.780 -3.982 5.398 0.193 C29 GJ9 22 GJ9 C32 C23 C 0 1 N N N 163.607 159.400 174.262 -2.659 -0.896 -2.092 C32 GJ9 23 GJ9 C33 C24 C 0 1 N N N 163.949 160.338 173.112 -1.706 -0.557 -3.251 C33 GJ9 24 GJ9 C34 C25 C 0 1 N N N 164.520 161.672 173.557 -0.825 0.623 -2.931 C34 GJ9 25 GJ9 C35 C26 C 0 1 Y N N 162.855 165.025 176.781 3.671 0.096 -3.038 C35 GJ9 26 GJ9 C37 C27 C 0 1 N N N 164.134 165.238 180.994 5.132 1.264 1.207 C37 GJ9 27 GJ9 C38 C28 C 0 1 N N N 164.611 164.926 182.430 5.680 1.081 2.624 C38 GJ9 28 GJ9 N05 N1 N 0 1 N N N 164.641 164.217 180.059 5.042 -0.045 0.543 N05 GJ9 29 GJ9 N07 N2 N 0 1 Y N N 164.652 163.755 177.629 3.253 0.578 -0.897 N07 GJ9 30 GJ9 N10 N3 N 1 1 N N N 163.773 162.214 174.785 0.449 0.127 -2.367 N10 GJ9 31 GJ9 N13 N4 N 0 1 N N N 162.179 159.390 174.734 -1.994 -0.799 -0.772 N13 GJ9 32 GJ9 N16 N5 N 0 1 Y N N 163.449 159.682 177.294 -2.597 -3.538 -0.782 N16 GJ9 33 GJ9 O01 O1 O 0 1 N N N 166.460 164.371 183.813 7.555 0.204 3.874 O01 GJ9 34 GJ9 O25 O2 O 0 1 N N N 160.448 157.050 174.485 -3.008 0.727 1.291 O25 GJ9 35 GJ9 O30 O3 O 0 1 N N N 160.370 156.699 168.896 -2.969 5.648 0.802 O30 GJ9 36 GJ9 O31 O4 O 0 1 N N N 162.392 157.152 169.738 -4.696 6.392 -0.359 O31 GJ9 37 GJ9 S36 S1 S 0 1 Y N N 162.756 165.411 178.426 5.112 -0.440 -2.177 S36 GJ9 38 GJ9 H021 H1 H 0 0 N N N 166.581 165.779 182.321 7.747 1.085 2.014 H021 GJ9 39 GJ9 H031 H2 H 0 0 N N N 166.216 162.802 181.768 7.939 -1.357 1.720 H031 GJ9 40 GJ9 H032 H3 H 0 0 N N N 167.706 163.773 181.515 6.298 -1.579 2.371 H032 GJ9 41 GJ9 H041 H4 H 0 0 N N N 166.487 163.401 179.394 7.027 -0.009 -0.144 H041 GJ9 42 GJ9 H042 H5 H 0 0 N N N 166.540 165.143 179.829 6.271 -1.620 -0.104 H042 GJ9 43 GJ9 H092 H6 H 0 0 N N N 165.239 163.787 174.930 1.239 2.014 -1.889 H092 GJ9 44 GJ9 H091 H7 H 0 0 N N N 163.607 164.330 174.410 1.502 1.491 -3.570 H091 GJ9 45 GJ9 H111 H8 H 0 0 N N N 161.758 162.896 174.988 0.025 0.683 -0.458 H111 GJ9 46 GJ9 H112 H9 H 0 0 N N N 162.111 162.033 173.453 1.329 -0.503 -0.647 H112 GJ9 47 GJ9 H121 H10 H 0 0 N N N 161.690 160.837 176.204 -0.557 -2.094 -1.541 H121 GJ9 48 GJ9 H122 H11 H 0 0 N N N 160.575 160.775 174.797 -0.453 -1.796 0.212 H122 GJ9 49 GJ9 H171 H12 H 0 0 N N N 164.692 160.690 178.588 -2.460 -5.419 -1.625 H171 GJ9 50 GJ9 H181 H13 H 0 0 N N N 164.400 159.120 180.498 -3.827 -6.500 0.109 H181 GJ9 51 GJ9 H191 H14 H 0 0 N N N 162.919 157.182 180.176 -4.742 -5.164 1.964 H191 GJ9 52 GJ9 H211 H15 H 0 0 N N N 161.418 155.888 178.754 -4.954 -2.930 3.046 H211 GJ9 53 GJ9 H233 H16 H 0 0 N N N 160.644 154.318 176.317 -3.871 -0.281 4.195 H233 GJ9 54 GJ9 H232 H17 H 0 0 N N N 159.644 154.949 177.669 -4.747 0.707 3.002 H232 GJ9 55 GJ9 H231 H18 H 0 0 N N N 159.230 155.372 175.973 -5.536 -0.710 3.735 H231 GJ9 56 GJ9 H261 H19 H 0 0 N N N 160.113 155.298 173.401 -4.917 1.486 1.068 H261 GJ9 57 GJ9 H262 H20 H 0 0 N N N 161.737 155.441 174.155 -3.974 1.329 -0.434 H262 GJ9 58 GJ9 H272 H21 H 0 0 N N N 162.586 156.482 172.325 -3.412 3.307 1.823 H272 GJ9 59 GJ9 H271 H22 H 0 0 N N N 161.221 157.648 172.277 -2.470 3.151 0.321 H271 GJ9 60 GJ9 H281 H23 H 0 0 N N N 159.829 155.774 171.211 -4.490 3.706 -1.005 H281 GJ9 61 GJ9 H282 H24 H 0 0 N N N 161.364 154.859 171.032 -5.433 3.863 0.496 H282 GJ9 62 GJ9 H321 H25 H 0 0 N N N 163.858 158.378 173.942 -3.503 -0.206 -2.114 H321 GJ9 63 GJ9 H322 H26 H 0 0 N N N 164.237 159.681 175.118 -3.031 -1.912 -2.227 H322 GJ9 64 GJ9 H331 H27 H 0 0 N N N 163.032 160.529 172.536 -1.078 -1.423 -3.458 H331 GJ9 65 GJ9 H332 H28 H 0 0 N N N 164.690 159.841 172.468 -2.296 -0.329 -4.140 H332 GJ9 66 GJ9 H341 H29 H 0 0 N N N 165.582 161.541 173.812 -0.626 1.189 -3.841 H341 GJ9 67 GJ9 H342 H30 H 0 0 N N N 164.428 162.395 172.733 -1.322 1.263 -2.201 H342 GJ9 68 GJ9 H351 H31 H 0 0 N N N 162.187 165.416 176.028 3.506 0.026 -4.103 H351 GJ9 69 GJ9 H372 H32 H 0 0 N N N 164.510 166.227 180.692 4.141 1.715 1.256 H372 GJ9 70 GJ9 H371 H33 H 0 0 N N N 163.034 165.241 180.968 5.799 1.913 0.640 H371 GJ9 71 GJ9 H382 H34 H 0 0 N N N 164.278 165.737 183.095 5.006 0.443 3.195 H382 GJ9 72 GJ9 H381 H35 H 0 0 N N N 164.157 163.978 182.753 5.761 2.053 3.111 H381 GJ9 73 GJ9 H101 H36 H 0 0 N N N 164.027 161.652 175.572 0.734 -0.694 -2.880 H101 GJ9 74 GJ9 H011 H37 H 0 0 N N N 166.156 165.006 184.451 7.650 1.009 4.400 H011 GJ9 75 GJ9 H1 H38 H 0 1 N N N 162.508 157.605 168.911 -4.360 7.291 -0.242 H1 GJ9 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GJ9 O30 C29 DOUB N N 1 GJ9 O31 C29 SING N N 2 GJ9 C29 C28 SING N N 3 GJ9 C28 C27 SING N N 4 GJ9 C27 C26 SING N N 5 GJ9 C33 C34 SING N N 6 GJ9 C33 C32 SING N N 7 GJ9 C34 N10 SING N N 8 GJ9 C26 O25 SING N N 9 GJ9 C32 N13 SING N N 10 GJ9 O25 C24 SING N N 11 GJ9 C11 N10 SING N N 12 GJ9 C11 C12 SING N N 13 GJ9 N13 C12 SING N N 14 GJ9 N13 C14 SING N N 15 GJ9 N10 C09 SING N N 16 GJ9 C09 C08 SING N N 17 GJ9 C24 C14 DOUB Y N 18 GJ9 C24 C22 SING Y N 19 GJ9 C14 C15 SING Y N 20 GJ9 C08 C35 DOUB Y N 21 GJ9 C08 N07 SING Y N 22 GJ9 C23 C22 SING N N 23 GJ9 C22 C21 DOUB Y N 24 GJ9 C35 S36 SING Y N 25 GJ9 C15 N16 DOUB Y N 26 GJ9 C15 C20 SING Y N 27 GJ9 N16 C17 SING Y N 28 GJ9 N07 C06 DOUB Y N 29 GJ9 C21 C20 SING Y N 30 GJ9 C20 C19 DOUB Y N 31 GJ9 S36 C06 SING Y N 32 GJ9 C17 C18 DOUB Y N 33 GJ9 C06 N05 SING N N 34 GJ9 C19 C18 SING Y N 35 GJ9 N05 C04 SING N N 36 GJ9 N05 C37 SING N N 37 GJ9 C04 C03 SING N N 38 GJ9 C37 C38 SING N N 39 GJ9 C03 C02 SING N N 40 GJ9 C38 C02 SING N N 41 GJ9 C02 O01 SING N N 42 GJ9 C02 H021 SING N N 43 GJ9 C03 H031 SING N N 44 GJ9 C03 H032 SING N N 45 GJ9 C04 H041 SING N N 46 GJ9 C04 H042 SING N N 47 GJ9 C09 H092 SING N N 48 GJ9 C09 H091 SING N N 49 GJ9 C11 H111 SING N N 50 GJ9 C11 H112 SING N N 51 GJ9 C12 H121 SING N N 52 GJ9 C12 H122 SING N N 53 GJ9 C17 H171 SING N N 54 GJ9 C18 H181 SING N N 55 GJ9 C19 H191 SING N N 56 GJ9 C21 H211 SING N N 57 GJ9 C23 H233 SING N N 58 GJ9 C23 H232 SING N N 59 GJ9 C23 H231 SING N N 60 GJ9 C26 H261 SING N N 61 GJ9 C26 H262 SING N N 62 GJ9 C27 H272 SING N N 63 GJ9 C27 H271 SING N N 64 GJ9 C28 H281 SING N N 65 GJ9 C28 H282 SING N N 66 GJ9 C32 H321 SING N N 67 GJ9 C32 H322 SING N N 68 GJ9 C33 H331 SING N N 69 GJ9 C33 H332 SING N N 70 GJ9 C34 H341 SING N N 71 GJ9 C34 H342 SING N N 72 GJ9 C35 H351 SING N N 73 GJ9 C37 H372 SING N N 74 GJ9 C37 H371 SING N N 75 GJ9 C38 H382 SING N N 76 GJ9 C38 H381 SING N N 77 GJ9 N10 H101 SING N N 78 GJ9 O01 H011 SING N N 79 GJ9 O31 H1 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GJ9 SMILES ACDLabs 12.01 "O=C(O)CCCOc1c(C)cc2cccnc2c1N1CCC[NH+](CC1)Cc1csc(n1)N1CCC(O)CC1" GJ9 InChI InChI 1.03 "InChI=1S/C28H37N5O4S/c1-20-17-21-5-2-9-29-25(21)26(27(20)37-16-3-6-24(35)36)32-11-4-10-31(14-15-32)18-22-19-38-28(30-22)33-12-7-23(34)8-13-33/h2,5,9,17,19,23,34H,3-4,6-8,10-16,18H2,1H3,(H,35,36)/p+1" GJ9 InChIKey InChI 1.03 OROWGUJESLHVQL-UHFFFAOYSA-O GJ9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc2cccnc2c(N3CCC[NH+](CC3)Cc4csc(n4)N5CCC(O)CC5)c1OCCCC(O)=O" GJ9 SMILES CACTVS 3.385 "Cc1cc2cccnc2c(N3CCC[NH+](CC3)Cc4csc(n4)N5CCC(O)CC5)c1OCCCC(O)=O" GJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cccnc2c(c1OCCCC(=O)O)N3CCC[NH+](CC3)Cc4csc(n4)N5CCC(CC5)O" GJ9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cccnc2c(c1OCCCC(=O)O)N3CCC[NH+](CC3)Cc4csc(n4)N5CCC(CC5)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GJ9 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R)-4-[7-(3-carboxypropoxy)-6-methylquinolin-8-yl]-1-{[2-(4-hydroxypiperidin-1-yl)-1,3-thiazol-4-yl]methyl}-1,4-diazepan-1-ium" GJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[6-methyl-8-[4-[[2-(4-oxidanylpiperidin-1-yl)-1,3-thiazol-4-yl]methyl]-1,4-diazepan-4-ium-1-yl]quinolin-7-yl]oxybutanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GJ9 "Create component" 2022-01-03 RCSB GJ9 "Initial release" 2022-07-27 RCSB #