data_GJF # _chem_comp.id GJF _chem_comp.name "(1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N10 O10 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-15 _chem_comp.pdbx_modified_date 2022-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 690.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XQ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GJF C1 C4 C 0 1 Y N N 166.870 161.369 157.453 -5.657 -0.200 0.056 C1 GJF 1 GJF C2 C5 C 0 1 Y N N 165.669 161.270 158.012 -6.250 -1.431 -0.273 C2 GJF 2 GJF C3 C6 C 0 1 Y N N 164.784 160.362 157.607 -7.546 -1.691 0.204 C3 GJF 3 GJF C4 C8 C 0 1 Y N N 166.712 162.889 158.978 -4.280 -1.400 -1.180 C4 GJF 4 GJF N1 N1 N 0 1 Y N N 165.066 159.489 156.641 -8.147 -0.765 0.943 N1 GJF 5 GJF N2 N3 N 0 1 Y N N 167.219 160.540 156.461 -6.339 0.668 0.797 N2 GJF 6 GJF C5 CAF C 0 1 N N R 167.953 168.097 160.264 3.112 0.372 -0.644 C5 GJF 7 GJF C6 CAG C 0 1 N N R 166.701 168.913 160.157 4.196 -0.015 0.379 C6 GJF 8 GJF C7 CAI C 0 1 N N R 168.299 170.009 158.905 4.021 2.342 0.434 C7 GJF 9 GJF C8 CAJ C 0 1 N N R 169.004 169.149 159.942 3.379 1.877 -0.891 C8 GJF 10 GJF O1 OAH O 0 1 N N N 166.916 169.557 158.895 4.593 1.184 1.050 O1 GJF 11 GJF O2 OAK O 0 1 N N N 169.284 169.970 161.085 4.295 2.049 -1.974 O2 GJF 12 GJF O3 OAL O 0 1 N N N 168.118 167.594 161.594 3.247 -0.368 -1.853 O3 GJF 13 GJF O4 OAN O 0 1 N N N 170.325 166.608 162.417 2.419 -0.217 -4.235 O4 GJF 14 GJF S1 SAO S 0 1 N N N 167.982 165.225 162.918 1.443 -2.639 -2.834 S1 GJF 15 GJF C9 CBH C 0 1 N N N 168.923 169.839 157.510 2.939 2.929 1.342 C9 GJF 16 GJF C10 CBJ C 0 1 Y N N 164.392 168.221 160.793 3.577 -2.329 1.195 C10 GJF 17 GJF C11 CBK C 0 1 Y N N 163.529 167.274 160.435 2.983 -2.820 2.369 C11 GJF 18 GJF C12 CBM C 0 1 Y N N 165.315 167.032 159.254 3.124 -0.665 2.568 C12 GJF 19 GJF C13 CBO C 0 1 Y N N 162.831 169.048 162.366 3.714 -4.477 0.389 C13 GJF 20 GJF C14 CBQ C 0 1 Y N N 162.323 167.206 160.991 2.780 -4.206 2.482 C14 GJF 21 GJF N3 NBI N 0 1 Y N N 165.487 168.073 160.062 3.649 -0.968 1.347 N3 GJF 22 GJF N4 NBL N 0 1 Y N N 164.096 166.553 159.475 2.733 -1.753 3.166 N4 GJF 23 GJF N5 NBN N 0 1 Y N N 164.081 169.109 161.745 3.924 -3.186 0.240 N5 GJF 24 GJF N6 NBP N 0 1 Y N N 161.943 168.051 161.957 3.159 -4.985 1.474 N6 GJF 25 GJF N7 NBR N 0 1 N N N 161.534 166.229 160.562 2.200 -4.747 3.615 N7 GJF 26 GJF O5 OBE O 0 1 N N N 169.420 167.863 154.917 0.564 3.708 -0.876 O5 GJF 27 GJF O6 OBG O 0 1 N N N 169.625 168.593 157.381 1.662 2.395 0.977 O6 GJF 28 GJF S2 SBF S 0 1 N N N 167.429 167.159 156.648 0.416 5.081 1.743 S2 GJF 29 GJF P1 PAM P 0 1 N N S 169.018 166.278 161.801 2.012 -0.597 -2.865 P1 GJF 30 GJF P2 PBD P 0 1 N N S 169.135 167.477 156.318 0.422 3.328 0.548 P2 GJF 31 GJF C15 C5* C 0 1 N N N 170.362 165.420 159.718 -0.275 -0.155 -1.548 C15 GJF 32 GJF O7 O5* O 0 1 N N N 169.103 165.563 160.379 0.770 0.315 -2.399 O7 GJF 33 GJF C16 C4* C 0 1 N N R 170.199 164.514 158.514 -1.175 1.017 -1.145 C16 GJF 34 GJF O8 O4* O 0 1 N N N 169.487 163.337 158.908 -2.514 0.755 -1.563 O8 GJF 35 GJF C17 C3* C 0 1 N N S 169.247 165.141 157.542 -1.174 1.178 0.382 C17 GJF 36 GJF O9 O3* O 0 1 N N N 169.923 166.133 156.746 -0.961 2.539 0.754 O9 GJF 37 GJF C18 C2* C 0 1 N N R 168.846 163.936 156.710 -2.584 0.730 0.816 C18 GJF 38 GJF O10 O2* O 0 1 N N N 169.824 163.650 155.704 -3.091 1.594 1.834 O10 GJF 39 GJF C19 C1* C 0 1 N N R 168.868 162.808 157.719 -3.421 0.863 -0.467 C19 GJF 40 GJF C20 C2 C 0 1 Y N N 166.313 159.561 156.030 -7.549 0.378 1.226 C20 GJF 41 GJF N8 N6 N 0 1 N N N 163.625 160.348 158.249 -8.181 -2.886 -0.088 N8 GJF 42 GJF N9 N7 N 0 1 Y N N 165.575 162.205 158.950 -5.357 -2.115 -1.028 N9 GJF 43 GJF N10 N9 N 0 1 Y N N 167.503 162.377 158.048 -4.416 -0.210 -0.529 N10 GJF 44 GJF H1 H1 H 0 1 N N N 166.948 163.711 159.637 -3.408 -1.704 -1.739 H1 GJF 45 GJF H2 H2 H 0 1 N N N 167.965 167.293 159.514 2.122 0.233 -0.212 H2 GJF 46 GJF H3 H3 H 0 1 N N N 166.626 169.635 160.984 5.050 -0.452 -0.135 H3 GJF 47 GJF H4 H4 H 0 1 N N N 168.356 171.066 159.203 4.788 3.083 0.229 H4 GJF 48 GJF H5 H5 H 0 1 N N N 169.911 168.688 159.524 2.452 2.408 -1.082 H5 GJF 49 GJF H6 H6 H 0 1 N N N 169.726 169.452 161.747 4.560 2.967 -2.122 H6 GJF 50 GJF H7 H7 H 0 1 N N N 168.755 165.089 163.954 0.422 -2.682 -3.708 H7 GJF 51 GJF H8 H8 H 0 1 N N N 169.629 170.664 157.334 3.154 2.675 2.379 H8 GJF 52 GJF H9 H9 H 0 1 N N N 168.122 169.875 156.756 2.923 4.014 1.231 H9 GJF 53 GJF H10 H10 H 0 1 N N N 166.035 166.646 158.547 3.043 0.331 2.978 H10 GJF 54 GJF H11 H11 H 0 1 N N N 162.560 169.751 163.139 4.008 -5.147 -0.407 H11 GJF 55 GJF H12 H12 H 0 1 N N N 160.670 166.252 161.066 1.928 -4.168 4.345 H12 GJF 56 GJF H13 H13 H 0 1 N N N 161.354 166.351 159.586 2.065 -5.705 3.681 H13 GJF 57 GJF H14 H14 H 0 1 N N N 166.885 167.371 155.486 1.610 5.636 1.471 H14 GJF 58 GJF H15 H15 H 0 1 N N N 171.093 164.980 160.412 -0.868 -0.899 -2.080 H15 GJF 59 GJF H16 H16 H 0 1 N N N 170.718 166.407 159.389 0.158 -0.608 -0.656 H16 GJF 60 GJF H17 H17 H 0 1 N N N 171.169 164.289 158.046 -0.817 1.932 -1.620 H17 GJF 61 GJF H18 H18 H 0 1 N N N 168.374 165.561 158.063 -0.417 0.539 0.835 H18 GJF 62 GJF H19 H19 H 0 1 N N N 167.839 164.068 156.287 -2.568 -0.301 1.160 H19 GJF 63 GJF H20 H20 H 0 1 N N N 169.548 162.894 155.200 -3.976 1.359 2.145 H20 GJF 64 GJF H21 H21 H 0 1 N N N 169.450 161.964 157.319 -3.916 1.834 -0.488 H21 GJF 65 GJF H22 H22 H 0 1 N N N 166.578 158.876 155.239 -8.075 1.106 1.826 H22 GJF 66 GJF H23 H23 H 0 1 N N N 163.053 159.610 157.890 -7.732 -3.554 -0.628 H23 GJF 67 GJF H24 H24 H 0 1 N N N 163.786 160.200 159.225 -9.075 -3.054 0.248 H24 GJF 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GJF O5 P2 DOUB N N 1 GJF O10 C18 SING N N 2 GJF C20 N2 DOUB Y N 3 GJF C20 N1 SING Y N 4 GJF P2 S2 SING N N 5 GJF P2 O9 SING N N 6 GJF P2 O6 SING N N 7 GJF N2 C1 SING Y N 8 GJF N1 C3 DOUB Y N 9 GJF C18 C17 SING N N 10 GJF C18 C19 SING N N 11 GJF O9 C17 SING N N 12 GJF O6 C9 SING N N 13 GJF C1 C2 DOUB Y N 14 GJF C1 N10 SING Y N 15 GJF C9 C7 SING N N 16 GJF C17 C16 SING N N 17 GJF C3 C2 SING Y N 18 GJF C3 N8 SING N N 19 GJF C19 N10 SING N N 20 GJF C19 O8 SING N N 21 GJF C2 N9 SING Y N 22 GJF N10 C4 SING Y N 23 GJF C16 O8 SING N N 24 GJF C16 C15 SING N N 25 GJF O1 C7 SING N N 26 GJF O1 C6 SING N N 27 GJF C7 C8 SING N N 28 GJF N9 C4 DOUB Y N 29 GJF C12 N4 DOUB Y N 30 GJF C12 N3 SING Y N 31 GJF N4 C11 SING Y N 32 GJF C15 O7 SING N N 33 GJF C8 C5 SING N N 34 GJF C8 O2 SING N N 35 GJF N3 C6 SING N N 36 GJF N3 C10 SING Y N 37 GJF C6 C5 SING N N 38 GJF C5 O3 SING N N 39 GJF O7 P1 SING N N 40 GJF C11 C10 DOUB Y N 41 GJF C11 C14 SING Y N 42 GJF N7 C14 SING N N 43 GJF C10 N5 SING Y N 44 GJF C14 N6 DOUB Y N 45 GJF O3 P1 SING N N 46 GJF N5 C13 DOUB Y N 47 GJF P1 O4 DOUB N N 48 GJF P1 S1 SING N N 49 GJF N6 C13 SING Y N 50 GJF C4 H1 SING N N 51 GJF C5 H2 SING N N 52 GJF C6 H3 SING N N 53 GJF C7 H4 SING N N 54 GJF C8 H5 SING N N 55 GJF O2 H6 SING N N 56 GJF S1 H7 SING N N 57 GJF C9 H8 SING N N 58 GJF C9 H9 SING N N 59 GJF C12 H10 SING N N 60 GJF C13 H11 SING N N 61 GJF N7 H12 SING N N 62 GJF N7 H13 SING N N 63 GJF S2 H14 SING N N 64 GJF C15 H15 SING N N 65 GJF C15 H16 SING N N 66 GJF C16 H17 SING N N 67 GJF C17 H18 SING N N 68 GJF C18 H19 SING N N 69 GJF O10 H20 SING N N 70 GJF C19 H21 SING N N 71 GJF C20 H22 SING N N 72 GJF N8 H23 SING N N 73 GJF N8 H24 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GJF InChI InChI 1.03 "InChI=1S/C20H24N10O10P2S2/c21-15-9-17(25-3-23-15)29(5-27-9)19-12(32)13-8(38-19)2-36-42(34,44)40-14-11(31)7(1-35-41(33,43)39-13)37-20(14)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-32H,1-2H2,(H,33,43)(H,34,44)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-,41+,42+/m1/s1" GJF InChIKey InChI 1.03 IZJJFUQKKZFVLH-ZPTFDBAZSA-N GJF SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@@](S)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P@@](S)(=O)O[C@H]4[C@H]3O)O[C@H]5n6cnc7c(N)ncnc67" GJF SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](O)[CH](CO[P](S)(=O)O[CH]4[CH]3O)O[CH]5n6cnc7c(N)ncnc67" GJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O)(O[C@@H]5[C@@H]([C@@H](CO[P@@](=O)(O4)S)O[C@H]5n6cnc7c6ncnc7N)O)S)O)N" GJF SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)S)OC5n6cnc7c6ncnc7N)O)S)O)N" # _pdbx_chem_comp_identifier.comp_id GJF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GJF "Create component" 2022-05-15 PDBJ GJF "Initial release" 2022-10-05 RCSB #