data_GJX # _chem_comp.id GJX _chem_comp.name "(1S,3R)-5-[4-(8-nitroquinolin-5-yl)piperazin-1-yl]carbonyladamantan-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-02 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GJX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CW7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GJX N N1 N 0 1 Y N N N N N 111.154 100.910 130.678 -5.153 -1.703 0.414 N GJX 1 GJX C C1 C 0 1 Y N N N N N 110.657 100.827 126.990 -4.242 1.522 -0.955 C GJX 2 GJX O O1 O 0 1 N N N N N N 116.883 101.971 123.788 3.236 2.873 0.641 O GJX 3 GJX C1 C2 C 0 1 Y N N N N N 111.790 101.514 126.553 -2.964 1.688 -0.430 C1 GJX 4 GJX C10 C3 C 0 1 N N N N N N 113.651 104.005 126.294 -0.192 -0.084 0.335 C10 GJX 5 GJX C11 C4 C 0 1 N N N N N N 116.090 103.141 126.233 0.669 2.466 1.441 C11 GJX 6 GJX C12 C5 C 0 1 N N N N N N 114.132 103.805 124.862 1.152 0.017 1.063 C12 GJX 7 GJX C13 C6 C 0 1 N N N N N N 116.257 103.018 123.825 2.846 1.726 0.588 C13 GJX 8 GJX C14 C7 C 0 1 N N N N N N 116.354 103.939 122.627 3.749 0.647 0.046 C14 GJX 9 GJX C15 C8 C 0 1 N N N N N N 115.166 103.738 121.644 4.010 -0.387 1.139 C15 GJX 10 GJX C16 C9 C 0 1 N N N N N N 117.650 103.586 121.838 5.076 1.273 -0.392 C16 GJX 11 GJX C17 C10 C 0 1 N N N N N N 117.893 104.452 120.566 5.978 0.169 -0.949 C17 GJX 12 GJX C18 C11 C 0 1 N N S N N N 115.673 104.681 120.611 4.926 -1.494 0.603 C18 GJX 13 GJX C19 C12 C 0 1 N N N N N N 118.011 105.930 121.022 5.305 -0.477 -2.159 C19 GJX 14 GJX C2 C13 C 0 1 Y N N N N N 111.359 101.103 129.359 -4.448 -0.601 0.138 C2 GJX 15 GJX C20 C14 C 0 1 N N N N N N 115.506 106.100 120.847 4.256 -2.086 -0.626 C20 GJX 16 GJX C21 C15 C 0 1 N N R N N N 116.680 105.959 121.685 3.965 -1.096 -1.742 C21 GJX 17 GJX C22 C16 C 0 1 N N N N N N 116.686 104.246 119.613 6.248 -0.867 0.141 C22 GJX 18 GJX C23 C17 C 0 1 N N N N N N 116.504 105.428 123.064 3.086 -0.001 -1.168 C23 GJX 19 GJX C3 C18 C 0 1 Y N N N N N 112.561 101.831 128.895 -3.148 -0.443 0.679 C3 GJX 20 GJX C4 C19 C 0 1 Y N N N N N 113.455 102.302 129.844 -2.623 -1.454 1.501 C4 GJX 21 GJX C5 C20 C 0 1 Y N N N N N 112.034 101.373 131.575 -4.666 -2.649 1.181 C5 GJX 22 GJX C6 C21 C 0 1 Y N N N N N 113.180 102.065 131.187 -3.397 -2.555 1.744 C6 GJX 23 GJX C7 C22 C 0 1 Y N N N N N 110.401 100.603 128.339 -4.976 0.408 -0.685 C7 GJX 24 GJX C8 C23 C 0 1 Y N N N N N 112.747 102.020 127.429 -2.408 0.722 0.383 C8 GJX 25 GJX C9 C24 C 0 1 N N N N N N 115.189 102.119 126.924 -0.656 2.268 0.698 C9 GJX 26 GJX N1 N2 N 1 1 N N N N N N 109.252 99.909 128.734 -6.333 0.260 -1.259 N1 GJX 27 GJX N2 N3 N 0 1 N N N N N N 113.852 102.700 126.900 -1.129 0.893 0.905 N2 GJX 28 GJX N3 N4 N 0 1 N N N N N N 115.519 103.325 124.902 1.606 1.416 1.013 N3 GJX 29 GJX O1 O2 O 0 1 N N N N N N 114.741 106.987 120.505 3.975 -3.258 -0.709 O1 GJX 30 GJX O2 O3 O 0 1 N N N N N N 108.444 99.299 127.780 -6.791 1.134 -1.972 O2 GJX 31 GJX O3 O4 O -1 1 N N N N N N 108.912 99.837 130.081 -6.990 -0.737 -1.018 O3 GJX 32 GJX H1 H1 H 0 1 N N N N N N 109.956 100.457 126.257 -4.658 2.291 -1.589 H1 GJX 33 GJX H2 H2 H 0 1 N N N N N N 111.931 101.659 125.492 -2.403 2.581 -0.659 H2 GJX 34 GJX H3 H3 H 0 1 N N N N N N 114.248 104.774 126.806 -0.049 0.125 -0.725 H3 GJX 35 GJX H4 H4 H 0 1 N N N N N N 112.589 104.290 126.317 -0.597 -1.089 0.456 H4 GJX 36 GJX H5 H5 H 0 1 N N N N N N 116.089 104.091 126.787 1.082 3.445 1.198 H5 GJX 37 GJX H6 H6 H 0 1 N N N N N N 117.119 102.760 126.161 0.502 2.393 2.515 H6 GJX 38 GJX H7 H7 H 0 1 N N N N N N 113.496 103.063 124.357 1.031 -0.292 2.101 H7 GJX 39 GJX H8 H8 H 0 1 N N N N N N 114.085 104.760 124.317 1.884 -0.623 0.570 H8 GJX 40 GJX H9 H9 H 0 1 N N N N N N 115.087 102.704 121.276 4.487 0.098 1.990 H9 GJX 41 GJX H10 H10 H 0 1 N N N N N N 114.201 104.051 122.071 3.063 -0.824 1.457 H10 GJX 42 GJX H11 H11 H 0 1 N N N N N N 118.509 103.719 122.512 4.891 2.019 -1.165 H11 GJX 43 GJX H12 H12 H 0 1 N N N N N N 117.587 102.532 121.528 5.559 1.742 0.465 H12 GJX 44 GJX H13 H13 H 0 1 N N N N N N 118.822 104.136 120.070 6.929 0.604 -1.257 H13 GJX 45 GJX H14 H14 H 0 1 N N N N N N 114.809 104.578 119.938 5.093 -2.259 1.361 H14 GJX 46 GJX H15 H15 H 0 1 N N N N N N 118.844 106.100 121.721 5.132 0.280 -2.924 H15 GJX 47 GJX H16 H16 H 0 1 N N N N N N 118.088 106.635 120.181 5.954 -1.255 -2.562 H16 GJX 48 GJX H17 H17 H 0 1 N N N N N N 116.731 107.017 121.983 3.488 -1.593 -2.587 H17 GJX 49 GJX H18 H18 H 0 1 N N N N N N 116.722 104.894 118.725 6.900 -1.646 -0.253 H18 GJX 50 GJX H19 H19 H 0 1 N N N N N N 116.559 103.200 119.298 6.735 -0.383 0.988 H19 GJX 51 GJX H20 H20 H 0 1 N N N N N N 115.605 105.820 123.562 2.131 -0.434 -0.870 H20 GJX 52 GJX H21 H21 H 0 1 N N N N N N 117.382 105.600 123.704 2.915 0.755 -1.934 H21 GJX 53 GJX H22 H22 H 0 1 N N N N N N 114.343 102.840 129.548 -1.636 -1.364 1.929 H22 GJX 54 GJX H23 H23 H 0 1 N N N N N N 111.851 101.206 132.626 -5.266 -3.525 1.382 H23 GJX 55 GJX H24 H24 H 0 1 N N N N N N 113.865 102.423 131.941 -3.023 -3.350 2.372 H24 GJX 56 GJX H25 H25 H 0 1 N N N N N N 115.203 101.164 126.379 -1.397 2.970 1.082 H25 GJX 57 GJX H26 H26 H 0 1 N N N N N N 115.518 101.955 127.961 -0.506 2.445 -0.367 H26 GJX 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GJX N C2 DOUB Y N 1 GJX N C5 SING Y N 2 GJX C C1 SING Y N 3 GJX C C7 DOUB Y N 4 GJX O C13 DOUB N N 5 GJX C1 C8 DOUB Y N 6 GJX C10 C12 SING N N 7 GJX C10 N2 SING N N 8 GJX C11 C9 SING N N 9 GJX C11 N3 SING N N 10 GJX C12 N3 SING N N 11 GJX C13 C14 SING N N 12 GJX C13 N3 SING N N 13 GJX C14 C15 SING N N 14 GJX C14 C16 SING N N 15 GJX C14 C23 SING N N 16 GJX C15 C18 SING N N 17 GJX C16 C17 SING N N 18 GJX C17 C19 SING N N 19 GJX C17 C22 SING N N 20 GJX C18 C20 SING N N 21 GJX C18 C22 SING N N 22 GJX C19 C21 SING N N 23 GJX C2 C3 SING Y N 24 GJX C2 C7 SING Y N 25 GJX C20 C21 SING N N 26 GJX C20 O1 DOUB N N 27 GJX C21 C23 SING N N 28 GJX C3 C4 DOUB Y N 29 GJX C3 C8 SING Y N 30 GJX C4 C6 SING Y N 31 GJX C5 C6 DOUB Y N 32 GJX C7 N1 SING N N 33 GJX C8 N2 SING N N 34 GJX C9 N2 SING N N 35 GJX N1 O2 DOUB N N 36 GJX N1 O3 SING N N 37 GJX C H1 SING N N 38 GJX C1 H2 SING N N 39 GJX C10 H3 SING N N 40 GJX C10 H4 SING N N 41 GJX C11 H5 SING N N 42 GJX C11 H6 SING N N 43 GJX C12 H7 SING N N 44 GJX C12 H8 SING N N 45 GJX C15 H9 SING N N 46 GJX C15 H10 SING N N 47 GJX C16 H11 SING N N 48 GJX C16 H12 SING N N 49 GJX C17 H13 SING N N 50 GJX C18 H14 SING N N 51 GJX C19 H15 SING N N 52 GJX C19 H16 SING N N 53 GJX C21 H17 SING N N 54 GJX C22 H18 SING N N 55 GJX C22 H19 SING N N 56 GJX C23 H20 SING N N 57 GJX C23 H21 SING N N 58 GJX C4 H22 SING N N 59 GJX C5 H23 SING N N 60 GJX C6 H24 SING N N 61 GJX C9 H25 SING N N 62 GJX C9 H26 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GJX InChI InChI 1.03 "InChI=1S/C24H26N4O4/c29-22-16-10-15-11-17(22)14-24(12-15,13-16)23(30)27-8-6-26(7-9-27)19-3-4-20(28(31)32)21-18(19)2-1-5-25-21/h1-5,15-17H,6-14H2/t15-,16-,17+,24-" GJX InChIKey InChI 1.03 RVHYZBKVITVCLB-XCEIDSMSSA-N GJX SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc(N2CCN(CC2)C(=O)C34CC5C[C@H](C3)C(=O)[C@@H](C5)C4)c6cccnc16" GJX SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc(N2CCN(CC2)C(=O)C34CC5C[CH](C3)C(=O)[CH](C5)C4)c6cccnc16" GJX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(ccc(c2nc1)[N+](=O)[O-])N3CCN(CC3)C(=O)C45C[C@H]6CC(C4)C[C@@H](C5)C6=O" GJX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(ccc(c2nc1)[N+](=O)[O-])N3CCN(CC3)C(=O)C45CC6CC(C4)C(=O)C(C6)C5" # _pdbx_chem_comp_identifier.comp_id GJX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},3~{R})-5-[4-(8-nitroquinolin-5-yl)piperazin-1-yl]carbonyladamantan-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GJX "Create component" 2020-09-02 PDBJ GJX "Initial release" 2024-08-14 RCSB #