data_GKB # _chem_comp.id GKB _chem_comp.name "(2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H21 F3 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-19 _chem_comp.pdbx_modified_date 2019-01-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HP9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKB N1 N1 N 0 1 Y N N 33.400 7.194 -42.053 -6.035 1.610 -0.107 N1 GKB 1 GKB N3 N2 N 0 1 N N N 39.985 -1.943 -36.757 6.988 -0.745 0.080 N3 GKB 2 GKB C4 C1 C 0 1 N N N 32.320 6.150 -37.342 -4.749 -3.136 0.002 C4 GKB 3 GKB C5 C2 C 0 1 Y N N 32.872 6.659 -39.729 -5.367 -0.713 -0.052 C5 GKB 4 GKB C6 C3 C 0 1 Y N N 33.666 6.457 -40.857 -5.034 0.634 0.008 C6 GKB 5 GKB C7 C4 C 0 1 Y N N 34.294 7.408 -43.084 -5.856 2.969 -0.068 C7 GKB 6 GKB C8 C5 C 0 1 Y N N 33.632 8.072 -44.069 -7.073 3.526 -0.216 C8 GKB 7 GKB C10 C6 C 0 1 Y N N 32.221 7.753 -42.440 -7.363 1.388 -0.285 C10 GKB 8 GKB C13 C7 C 0 1 Y N N 37.087 0.471 -38.713 2.032 -0.758 -0.361 C13 GKB 9 GKB C15 C8 C 0 1 Y N N 39.421 0.095 -39.136 3.664 0.627 0.715 C15 GKB 10 GKB C17 C9 C 0 1 N N R 39.753 -2.070 -38.189 5.744 -0.082 -0.320 C17 GKB 11 GKB C20 C10 C 0 1 Y N N 38.876 -4.716 -33.998 10.558 1.153 -0.419 C20 GKB 12 GKB C21 C11 C 0 1 Y N N 39.771 -2.702 -34.474 9.406 -0.706 0.283 C21 GKB 13 GKB C22 C12 C 0 1 N N N 38.262 -1.852 -38.446 4.627 -1.118 -0.571 C22 GKB 14 GKB C24 C13 C 0 1 Y N N 38.443 2.251 -39.577 1.330 1.093 1.016 C24 GKB 15 GKB N N3 N 0 1 N N N 35.864 3.704 -39.796 -1.388 0.422 0.462 N GKB 16 GKB C C14 C 0 1 N N N 35.999 2.664 -38.940 -0.404 -0.323 -0.079 C GKB 17 GKB O O1 O 0 1 N N N 35.171 2.405 -38.071 -0.678 -1.267 -0.793 O GKB 18 GKB C1 C15 C 0 1 Y N N 34.931 4.767 -39.705 -2.724 0.044 0.293 C1 GKB 19 GKB C11 C16 C 0 1 Y N N 34.700 5.525 -40.845 -3.712 1.013 0.180 C11 GKB 20 GKB C12 C17 C 0 1 Y N N 37.205 1.797 -39.123 1.010 0.009 0.197 C12 GKB 21 GKB C14 C18 C 0 1 Y N N 38.184 -0.378 -38.731 3.353 -0.449 -0.099 C14 GKB 22 GKB C16 C19 C 0 1 N N N 40.463 -0.983 -39.000 5.167 0.752 0.843 C16 GKB 23 GKB C18 C20 C 0 1 Y N N 39.594 -2.909 -35.838 8.212 -0.094 -0.091 C18 GKB 24 GKB C19 C21 C 0 1 Y N N 39.031 -4.137 -36.171 8.272 1.180 -0.651 C19 GKB 25 GKB C2 C22 C 0 1 Y N N 34.145 4.967 -38.571 -3.063 -1.302 0.228 C2 GKB 26 GKB C23 C23 C 0 1 Y N N 39.546 1.411 -39.574 2.651 1.395 1.267 C23 GKB 27 GKB C3 C24 C 0 1 Y N N 33.122 5.913 -38.584 -4.383 -1.676 0.061 C3 GKB 28 GKB C9 C25 C 0 1 N N N 34.127 8.495 -45.421 -7.372 5.003 -0.230 C9 GKB 29 GKB F F1 F 0 1 N N N 31.653 7.293 -37.358 -3.844 -3.875 0.772 F GKB 30 GKB F1 F2 F 0 1 N N N 33.089 6.170 -36.244 -6.042 -3.314 0.506 F1 GKB 31 GKB F2 F3 F 0 1 N N N 31.393 5.226 -37.132 -4.701 -3.576 -1.325 F2 GKB 32 GKB N2 N4 N 0 1 Y N N 32.290 8.297 -43.634 -7.973 2.540 -0.343 N2 GKB 33 GKB N4 N5 N 0 1 Y N N 38.665 -5.049 -35.268 9.451 1.764 -0.791 N4 GKB 34 GKB N5 N6 N 0 1 Y N N 39.413 -3.589 -33.545 10.544 -0.057 0.104 N5 GKB 35 GKB H1 H1 H 0 1 N N N 40.974 -1.842 -36.646 6.961 -1.635 0.465 H1 GKB 36 GKB H2 H2 H 0 1 N N N 32.073 7.386 -39.745 -6.398 -1.009 -0.182 H2 GKB 37 GKB H3 H3 H 0 1 N N N 35.330 7.103 -43.104 -4.919 3.491 0.058 H3 GKB 38 GKB H4 H4 H 0 1 N N N 31.328 7.750 -41.833 -7.835 0.420 -0.362 H4 GKB 39 GKB H5 H5 H 0 1 N N N 36.130 0.099 -38.377 1.790 -1.598 -0.996 H5 GKB 40 GKB H6 H6 H 0 1 N N N 40.055 -3.064 -38.550 5.903 0.537 -1.203 H6 GKB 41 GKB H7 H7 H 0 1 N N N 38.578 -5.441 -33.254 11.504 1.656 -0.552 H7 GKB 42 GKB H8 H8 H 0 1 N N N 40.222 -1.775 -34.151 9.402 -1.697 0.713 H8 GKB 43 GKB H9 H9 H 0 1 N N N 37.665 -2.116 -37.561 4.560 -1.352 -1.633 H9 GKB 44 GKB H10 H10 H 0 1 N N N 37.919 -2.441 -39.309 4.816 -2.024 0.004 H10 GKB 45 GKB H11 H11 H 0 1 N N N 38.543 3.265 -39.934 0.545 1.696 1.449 H11 GKB 46 GKB H12 H12 H 0 1 N N N 36.489 3.724 -40.576 -1.171 1.220 0.968 H12 GKB 47 GKB H13 H13 H 0 1 N N N 35.320 5.392 -41.719 -3.450 2.060 0.226 H13 GKB 48 GKB H14 H14 H 0 1 N N N 40.765 -1.364 -39.987 5.470 1.795 0.747 H14 GKB 49 GKB H15 H15 H 0 1 N N N 41.348 -0.608 -38.465 5.500 0.348 1.799 H15 GKB 50 GKB H16 H16 H 0 1 N N N 38.882 -4.364 -37.216 7.370 1.685 -0.962 H16 GKB 51 GKB H17 H17 H 0 1 N N N 34.330 4.387 -37.679 -2.295 -2.056 0.307 H17 GKB 52 GKB H18 H18 H 0 1 N N N 40.504 1.778 -39.912 2.898 2.234 1.901 H18 GKB 53 GKB H19 H19 H 0 1 N N N 33.310 8.980 -45.976 -7.570 5.344 0.786 H19 GKB 54 GKB H20 H20 H 0 1 N N N 34.960 9.203 -45.301 -6.516 5.544 -0.634 H20 GKB 55 GKB H21 H21 H 0 1 N N N 34.474 7.612 -45.977 -8.246 5.191 -0.853 H21 GKB 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKB C9 C8 SING N N 1 GKB C8 N2 SING Y N 2 GKB C8 C7 DOUB Y N 3 GKB N2 C10 DOUB Y N 4 GKB C7 N1 SING Y N 5 GKB C10 N1 SING Y N 6 GKB N1 C6 SING N N 7 GKB C6 C11 DOUB Y N 8 GKB C6 C5 SING Y N 9 GKB C11 C1 SING Y N 10 GKB N C1 SING N N 11 GKB N C SING N N 12 GKB C5 C3 DOUB Y N 13 GKB C1 C2 DOUB Y N 14 GKB C24 C23 DOUB Y N 15 GKB C24 C12 SING Y N 16 GKB C23 C15 SING Y N 17 GKB C15 C16 SING N N 18 GKB C15 C14 DOUB Y N 19 GKB C12 C SING N N 20 GKB C12 C13 DOUB Y N 21 GKB C16 C17 SING N N 22 GKB C O DOUB N N 23 GKB C14 C13 SING Y N 24 GKB C14 C22 SING N N 25 GKB C3 C2 SING Y N 26 GKB C3 C4 SING N N 27 GKB C22 C17 SING N N 28 GKB C17 N3 SING N N 29 GKB F C4 SING N N 30 GKB C4 F2 SING N N 31 GKB C4 F1 SING N N 32 GKB N3 C18 SING N N 33 GKB C19 C18 DOUB Y N 34 GKB C19 N4 SING Y N 35 GKB C18 C21 SING Y N 36 GKB N4 C20 DOUB Y N 37 GKB C21 N5 DOUB Y N 38 GKB C20 N5 SING Y N 39 GKB N3 H1 SING N N 40 GKB C5 H2 SING N N 41 GKB C7 H3 SING N N 42 GKB C10 H4 SING N N 43 GKB C13 H5 SING N N 44 GKB C17 H6 SING N N 45 GKB C20 H7 SING N N 46 GKB C21 H8 SING N N 47 GKB C22 H9 SING N N 48 GKB C22 H10 SING N N 49 GKB C24 H11 SING N N 50 GKB N H12 SING N N 51 GKB C11 H13 SING N N 52 GKB C16 H14 SING N N 53 GKB C16 H15 SING N N 54 GKB C19 H16 SING N N 55 GKB C2 H17 SING N N 56 GKB C23 H18 SING N N 57 GKB C9 H19 SING N N 58 GKB C9 H20 SING N N 59 GKB C9 H21 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKB InChI InChI 1.03 "InChI=1S/C25H21F3N6O/c1-15-12-34(14-31-15)23-8-19(25(26,27)28)7-21(9-23)33-24(35)17-3-2-16-5-20(6-18(16)4-17)32-22-10-29-13-30-11-22/h2-4,7-14,20,32H,5-6H2,1H3,(H,33,35)/t20-/m1/s1" GKB InChIKey InChI 1.03 XFLAQLCDMJRPFH-HXUWFJFHSA-N GKB SMILES_CANONICAL CACTVS 3.385 "Cc1cn(cn1)c2cc(NC(=O)c3ccc4C[C@H](Cc4c3)Nc5cncnc5)cc(c2)C(F)(F)F" GKB SMILES CACTVS 3.385 "Cc1cn(cn1)c2cc(NC(=O)c3ccc4C[CH](Cc4c3)Nc5cncnc5)cc(c2)C(F)(F)F" GKB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cn(cn1)c2cc(cc(c2)NC(=O)c3ccc4c(c3)C[C@@H](C4)Nc5cncnc5)C(F)(F)F" GKB SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cn(cn1)c2cc(cc(c2)NC(=O)c3ccc4c(c3)CC(C4)Nc5cncnc5)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKB "Create component" 2018-09-19 EBI GKB "Initial release" 2019-01-30 RCSB #